CmaCh06G016370 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G016370
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	SANTA domain-containing protein
Location	Cma_Chr06: 10191393 .. 10194423 (+)
RNA-Seq Expression	CmaCh06G016370
Synteny	CmaCh06G016370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCCCGCCCGTCCGCCACCATGGTGAGAACGCGATGCAAGTCCGCCGCTGCCACTCCCCACTCTATCCCCTTCAAGACCGACCGGCCGCCGATCGCCACCGCCATTACGCCGAAAACACCGCTTAGTTGTTCTACATCTATCATTCCTTCCTCACTCAAATCAGTACGTTTTAGTTGACTTCTCCCTCAGTCGAACACTTTCTCATGTTTGATGATTTGTTTTCTGATTTTCTGTGTGTTCCTTCTCTCTTAGGTTTTTTTATACGATTGGTGGCTGACAAAGGCTGATGATGGCGAGGGCTTGGCTGTCGGAGGGTTTGCTTCCAGAGAGTAAGACATTGCTTCCCCTAACTCTTTCATTTCAGCTTCTTATTCGTTTTCGTTGTTCTTCGGGAAATGTGTGGTATCTGATGAGATATAGTTATGGCCATGCCATAATTGAGTGACTGAATATCGTTGCTAAAGATAATCTGTATCTATATTCTCTGGTTTATCTGTATTCTAAAATTTTATATTGATGTTAATTTGAGAGGAATTATCCTATGACTTGGTGAAGTTTTGAAATTGATTGAAAACTAGATAATGAGTTGGTGAAGATGAGTAGTTTGATGTTATTTATTTACCTTAATTGTTAATACTGGAAGCCATCCATGAAAAGTCTGGCATTGTGAAAAGGAAGAGTGAAACCTTAAGTTTAGATGATTGCTCAGGAAAAACATGTGATATCGTGCTAGAATGGAGTCCTCTTCCATCCTTTACTTATTGGTTCCTCGCCATCATACAATCTGGAATTATAAGCCTCCTGACTTGGTGGTTGCTTGCAGTTTAAAGTTAAACATTCAGACAAGACATTGAGATATCATGTTATCTCCTTGTTGGTATGTTTTATGGGAGAAGAGCTGATCATAATTTTATGAGCTATTAGTTAGCCACAAATTTGTGGGGAAGGTCTTTGGTGTTTTTGGTTTCCAATTGGCATAAAATCATCAACGGATGTTGGTATCCTGCCCATAAAAAATATCCATCTGCTTTCAGGTTTCCTCTTACGAACGTGGACCCAAAATTAATTCTTTGAGAAGGGTAATGATTAAAGATATTAATAAAACCACCATGGGTGATAAAGGGCTTAACGGGAATGAGTCCAAGCTATGGTGCCCACATACCTAGAATTGAATATGTTATTAGTTATCTTGACAACTAAATATAGTAGAATCAGAATGTTGTCTCGTGAAGTCAGTCGAAGTGCAAGCAAATGCAGACTTAGACACTTACGTGTATAACAATAAAATAAAATTTGCCGAAGGAGAAGAAGTGAAGCCCTTCACTCGTCATGCATACTTTTTTTTTTTTTTTCCAAGACTGAGGAATTTAATTGATGATTGACCTTCCTTTCATTGTTCTGATTGTGTTAAAAGATAATAGTTTTCATTATCTCGTACATTCGGATCGTATCTGTGCTGTTTCTTCTTTCAAAGATTTTTCCGATTCATTATTGCAGAGGTGCTGGGGTTAGAGTATTTTATTCTGCAGCGATTTCTAAGAGACATGAAGCCAGCATTCTCGAGGCAATAGATGGCATTGTCATTACTGTCAGTGGCTTCATAAATAGATCACGAACGCTTGAAAATGGCTTTCCTCCGAAGGTATGTATGCAGACCATTGTTCTTATTTCTCCCAACTTTATGTTCTTGACCCGTTACTGATGGCTGAACATATAAACATATCCTACCCTCCTGAATATTCTTGAAACTTAGAAAAATTAACGACATGTAACTTGAGCAGGTGTACAATCATTTCCTTCTTGGTTTTCCCTTCAATTGGAAAGACTATATGGGTTCTAGTTCGGATAAAAAATCCCAGTTGAAGTGTATTAAAGGAAGTACTTCCCATCCTGACCATCCAGGCAGAAGCCATGATTTTGAAGCTGACTTAGACAGTCTTGCAGTTACTAGGTTGCGAGATCTCTTTTTGTCCTCCTGTGAAAAATCTAGTCATGACCTCTTTATGACGAACCGAAATTCAAGTCGTAGTCCAACAAAAAAATTTGAATCTGGACTAGAAACCCTGAAAGGAAGACCTCAACGAGTGAATTCCTATCAATACGTTGACGAGCAAGGTTTCCGGGATGAGAGGAAGTATAGTGATGTAAAGGATCCATTGCACGGTAGTCAAGAAACTGATTCTACGGTGGAAATTGAACCCCAGAATCTAGGAAGCAGAAGTGTTTGCACAAGAAGCATGACCAAGTTGAAAAATTCTAGTAACAGAAGTAAAGAGAGGCTCATATCAGACTCTCACAAGAGAAAAAAGGACCAGGAGAGTAACCCTTCATGTGAAAACTCTGGAAAGAGAACTGGACCGAGAGTTAAAAGTAGCTCAAATTATACGTCAACAACCGATTTTACTTTTAGATTTGAAAAGGAAGTTGATGCAATCACAGATAAACCTGAGAGTAGAAGATCAAGTCTTAGGCTAAGGAACCAAAAGCGTCGATAGGTGTGGTATACTCCCAAGTTTTTGTGCAATGTTGATATCCATCCCCTTAAAGATTGATACTCAAATCAAGTATTTGTCTGGGCTCACTTTTACAATCGGAATTCAGTGCTCTCTCAGTCATCTCAAATCGACTTCGAGAGTTTTTTTTTTTTGTTCTTTTTTTCTTCAATTTGATTGATAAGATTAGGAAAAATGGACATCTTCCCACAGTTGTAGATATTTTTGTTTCTTATTGTTGTGTACGTTTATGTTGTCAGTGTATGTTTATGGTACAAGCATCAGATTGCTCGCTGGAGGGTTGTGTATTTCTATGTACAAAGAAAGATGACAATCTCCTTTGGAGAAACAATAGGTTCTTTTGGCTTTTGGGAAGGCATCTATGATCCTTCTAAAATTATGTGGAAGAGCTTTTCATGCTTTGAATTTCTCTCCCCTTTCAGTTTTCCTCTAATTGATTTGTGTGAAGACGAAATTTACTGTGTGGATGATGTGTTCAGGATCTGCCAGGACACCGTATGGATGATGCTATCTAA

mRNA sequence

TCTTCCCGCCCGTCCGCCACCATGGTGAGAACGCGATGCAAGTCCGCCGCTGCCACTCCCCACTCTATCCCCTTCAAGACCGACCGGCCGCCGATCGCCACCGCCATTACGCCGAAAACACCGCTTAGTTGTTCTACATCTATCATTCCTTCCTCACTCAAATCAGTTTTTTTATACGATTGGTGGCTGACAAAGGCTGATGATGGCGAGGGCTTGGCTGTCGGAGGGTTTGCTTCCAGAGAAGGTGCTGGGGTTAGAGTATTTTATTCTGCAGCGATTTCTAAGAGACATGAAGCCAGCATTCTCGAGGCAATAGATGGCATTGTCATTACTGTCAGTGGCTTCATAAATAGATCACGAACGCTTGAAAATGGCTTTCCTCCGAAGGTGTACAATCATTTCCTTCTTGGTTTTCCCTTCAATTGGAAAGACTATATGGGTTCTAGTTCGGATAAAAAATCCCAGTTGAAGTGTATTAAAGGAAGTACTTCCCATCCTGACCATCCAGGCAGAAGCCATGATTTTGAAGCTGACTTAGACAGTCTTGCAGTTACTAGGTTGCGAGATCTCTTTTTGTCCTCCTGTGAAAAATCTAGTCATGACCTCTTTATGACGAACCGAAATTCAAGTCGTAGTCCAACAAAAAAATTTGAATCTGGACTAGAAACCCTGAAAGGAAGACCTCAACGAGTGAATTCCTATCAATACGTTGACGAGCAAGGTTTCCGGGATGAGAGGAAGTATAGTGATGTAAAGGATCCATTGCACGGTAGTCAAGAAACTGATTCTACGGTGGAAATTGAACCCCAGAATCTAGGAAGCAGAAGTGTTTGCACAAGAAGCATGACCAAGTTGAAAAATTCTAGTAACAGAAGTAAAGAGAGGCTCATATCAGACTCTCACAAGAGAAAAAAGGACCAGGAGAGTAACCCTTCATGTGAAAACTCTGGAAAGAGAACTGGACCGAGAGATCTGCCAGGACACCGTATGGATGATGCTATCTAA

Coding sequence (CDS)

ATGGTGAGAACGCGATGCAAGTCCGCCGCTGCCACTCCCCACTCTATCCCCTTCAAGACCGACCGGCCGCCGATCGCCACCGCCATTACGCCGAAAACACCGCTTAGTTGTTCTACATCTATCATTCCTTCCTCACTCAAATCAGTTTTTTTATACGATTGGTGGCTGACAAAGGCTGATGATGGCGAGGGCTTGGCTGTCGGAGGGTTTGCTTCCAGAGAAGGTGCTGGGGTTAGAGTATTTTATTCTGCAGCGATTTCTAAGAGACATGAAGCCAGCATTCTCGAGGCAATAGATGGCATTGTCATTACTGTCAGTGGCTTCATAAATAGATCACGAACGCTTGAAAATGGCTTTCCTCCGAAGGTGTACAATCATTTCCTTCTTGGTTTTCCCTTCAATTGGAAAGACTATATGGGTTCTAGTTCGGATAAAAAATCCCAGTTGAAGTGTATTAAAGGAAGTACTTCCCATCCTGACCATCCAGGCAGAAGCCATGATTTTGAAGCTGACTTAGACAGTCTTGCAGTTACTAGGTTGCGAGATCTCTTTTTGTCCTCCTGTGAAAAATCTAGTCATGACCTCTTTATGACGAACCGAAATTCAAGTCGTAGTCCAACAAAAAAATTTGAATCTGGACTAGAAACCCTGAAAGGAAGACCTCAACGAGTGAATTCCTATCAATACGTTGACGAGCAAGGTTTCCGGGATGAGAGGAAGTATAGTGATGTAAAGGATCCATTGCACGGTAGTCAAGAAACTGATTCTACGGTGGAAATTGAACCCCAGAATCTAGGAAGCAGAAGTGTTTGCACAAGAAGCATGACCAAGTTGAAAAATTCTAGTAACAGAAGTAAAGAGAGGCTCATATCAGACTCTCACAAGAGAAAAAAGGACCAGGAGAGTAACCCTTCATGTGAAAACTCTGGAAAGAGAACTGGACCGAGAGATCTGCCAGGACACCGTATGGATGATGCTATCTAA

Protein sequence

MVRTRCKSAAATPHSIPFKTDRPPIATAITPKTPLSCSTSIIPSSLKSVFLYDWWLTKADDGEGLAVGGFASREGAGVRVFYSAAISKRHEASILEAIDGIVITVSGFINRSRTLENGFPPKVYNHFLLGFPFNWKDYMGSSSDKKSQLKCIKGSTSHPDHPGRSHDFEADLDSLAVTRLRDLFLSSCEKSSHDLFMTNRNSSRSPTKKFESGLETLKGRPQRVNSYQYVDEQGFRDERKYSDVKDPLHGSQETDSTVEIEPQNLGSRSVCTRSMTKLKNSSNRSKERLISDSHKRKKDQESNPSCENSGKRTGPRDLPGHRMDDAI

Homology

[Close]

BLAST of CmaCh06G016370 vs. ExPASy Swiss-Prot
Match: Q8RWD7 (Protein EMBRYO DEFECTIVE 1674 OS=Arabidopsis thaliana OX=3702 GN=EMB1674 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.0e-26
Identity = 70/158 (44.30%), Postives = 92/158 (58.23%), Query Frame = 0


Query: 34  PLSCSTSIIPSSLKSVFLYDWWLTKADDGEGLAVGGFASREGAGVRVFYSAAISKRHEAS 93
           PL+  T I   +LKSV L DWWLTK   G+ L + GF S   +GVR+F S  ISKRHE++
Sbjct: 53  PLAVITPI--KTLKSVTLSDWWLTK--KGKDLCIKGFESNGASGVRLFSSGTISKRHEST 112

Query: 94  ILEAIDGIVITVSGFINRSRTLENGFPPKVYNHFLLGFPFNWKDYMGSSSDKKSQLKCIK 153
            LEAIDGI I+++GFINRSR LENG   +V N F LGFP++W+DY     +KK +     
Sbjct: 113 TLEAIDGITISINGFINRSRCLENGISIEVCNRFRLGFPYDWEDYNEEEEEKKKK----- 172

Query: 154 GSTSHPDHPGRSHDFEADLDSLAVTRLRDLF-LSSCEK 191
                        + +   D + V R +DL+ L  C K
Sbjct: 173 -------------NVDISFDDIPVNRYQDLYSLEGCLK 188

[Close]

BLAST of CmaCh06G016370 vs. ExPASy Swiss-Prot
Match: F4KCE9 (Kinetochore-associated protein KNL-2 homolog OS=Arabidopsis thaliana OX=3702 GN=KNL2 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.4e-13
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 47  KSVFLYDWWLTKAD---DGEGLAVGGF-ASREGAGVRVFYSAAISKRHEASILEAIDGIV 106
           K+V L DWWL K     +G+   V GF  S E   +RVF S+ I+K  +   L A DGI 
Sbjct: 17  KTVVLRDWWLIKCPKEFEGKQFGVAGFEESVETRAMRVFTSSPITKALDVFTLLASDGIY 76

Query: 107 ITVSGFINRSRTLENGFPPKVYNHFLLGFPFNWK 137
           IT+ GF+N+ R L+NGF P++   F+ GFP  W+
Sbjct: 77  ITLRGFLNKERVLKNGFNPEISREFIFGFPPCWE 110

[Close]

BLAST of CmaCh06G016370 vs. TAIR 10
Match: AT1G58210.1 (kinase interacting family protein )

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-27
Identity = 70/158 (44.30%), Postives = 92/158 (58.23%), Query Frame = 0


Query: 34  PLSCSTSIIPSSLKSVFLYDWWLTKADDGEGLAVGGFASREGAGVRVFYSAAISKRHEAS 93
           PL+  T I   +LKSV L DWWLTK   G+ L + GF S   +GVR+F S  ISKRHE++
Sbjct: 53  PLAVITPI--KTLKSVTLSDWWLTK--KGKDLCIKGFESNGASGVRLFSSGTISKRHEST 112

Query: 94  ILEAIDGIVITVSGFINRSRTLENGFPPKVYNHFLLGFPFNWKDYMGSSSDKKSQLKCIK 153
            LEAIDGI I+++GFINRSR LENG   +V N F LGFP++W+DY     +KK +     
Sbjct: 113 TLEAIDGITISINGFINRSRCLENGISIEVCNRFRLGFPYDWEDYNEEEEEKKKK----- 172

Query: 154 GSTSHPDHPGRSHDFEADLDSLAVTRLRDLF-LSSCEK 191
                        + +   D + V R +DL+ L  C K
Sbjct: 173 -------------NVDISFDDIPVNRYQDLYSLEGCLK 188

[Close]

BLAST of CmaCh06G016370 vs. TAIR 10
Match: AT5G02520.1 (CONTAINS InterPro DOMAIN/s: SANT associated (InterPro:IPR015216); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT1G58210.1); Has 842 Blast hits to 736 proteins in 154 species: Archae - 2; Bacteria - 99; Metazoa - 236; Fungi - 52; Plants - 90; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 5.3e-14
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 47  KSVFLYDWWLTKAD---DGEGLAVGGF-ASREGAGVRVFYSAAISKRHEASILEAIDGIV 106
           K+V L DWWL K     +G+   V GF  S E   +RVF S+ I+K  +   L A DGI 
Sbjct: 17  KTVVLRDWWLIKCPKEFEGKQFGVAGFEESVETRAMRVFTSSPITKALDVFTLLASDGIY 76

Query: 107 ITVSGFINRSRTLENGFPPKVYNHFLLGFPFNWK 137
           IT+ GF+N+ R L+NGF P++   F+ GFP  W+
Sbjct: 77  ITLRGFLNKERVLKNGFNPEISREFIFGFPPCWE 110

The following BLAST results are available for this feature:

BLAST of CmaCh06G016370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWD7	2.0e-26	44.30	Protein EMBRYO DEFECTIVE 1674 OS=Arabidopsis thaliana OX=3702 GN=EMB1674 PE=2 SV...	[more]
F4KCE9	7.4e-13	43.62	Kinetochore-associated protein KNL-2 homolog OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of CmaCh06G016370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G58210.1	1.4e-27	44.30	kinase interacting family protein	[more]
AT5G02520.1	5.3e-14	43.62	CONTAINS InterPro DOMAIN/s: SANT associated (InterPro:IPR015216); BEST Arabidops...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015216	SANT associated	PFAM	PF09133	SANTA	coord: 49..138 e-value: 8.1E-23 score: 80.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..279
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..305
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 232..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..327
None	No IPR available	PANTHER	PTHR35311:SF8	INTERACTING FAMILY PROTEIN, PUTATIVE-RELATED	coord: 22..304
None	No IPR available	PANTHER	PTHR35311	KINETOCHORE-ASSOCIATED PROTEIN KNL-2 HOMOLOG	coord: 22..304

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G016370.1	CmaCh06G016370.1	mRNA