CmaCh06G016040 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G016040
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	titin homolog isoform X2
Location	Cma_Chr06: 9988207 .. 9993470 (+)
RNA-Seq Expression	CmaCh06G016040
Synteny	CmaCh06G016040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGGTATGAAATGAAGGTTGAGAACAAGCACATGGAGGGCTACACAGCGTAAGCCGTCGCAGGCGCTAGTTTCTTCTTCACTGTTTGCACTGACCGCAAGGCCCGCAACCCCTTTTCTCAAAACCCCACTTCTGGACTTTTCTCCATTGCCCCCTGTTTCCCTTTCCTTTTTTCAACCCTTTCGAAACAAATATAGTGAATGAATTAATGAATTCCCATTTTCCCAAATGAATGATTCTCCCTCTTTTTAATCTCTTCGTTTTGCTTCTTCTTCGGATCTTCTCTCGCTTTCAGAAATGGAGCATCGAGATCAGAGTAAGTAGTCAATTCCCTTTAGAATTTTGGGGTTTGTTCTTGAAATTGGCGGTGAAATCTTGGCTTGCTTGGTGATTTGTGTTCATTTTGGGGGTTCATAATGGATTTGGGCATTTGGGTTTTTGTGGGTTTTGGAAATTAGTTGTTGGGTTTGTTTTTGATTAAGGGTTTTGTTGGGTTTTGTAGGGCAGGAGAGCCATGGAGTTCATGTTTGCAACAAATGTGGATGGCCCTTTTCTAGCTCTCATCCGAGTGCCAAACGTAGGCGTGCTCACAAGAGGGTTTGTGGAACCATTGAAGGGTTCAAGCTGGTTGAGTCTGAGGCTAATACCCTTTTGGCTGTTTCAGATAATGATGGCCATCATAATAGTTCCAGTGAGAATTCTCTTCCATACGCCGTATTCTTTATAATTTTGCTATCTGCGCTTTCTTGTTTGTTCTTTTTTTTGCTTTCTGGGCTTTCAAAGTCTTGTTTGATTGTCTTGAACTTTGGATAAAGAGCAATTCTAGTGCTTGTTGTTAATCTTCTGTGAGTTGTTTAATGGAAACATGGCATCAGTGGTCAACTGGGAGAATTAGCAGGTTGGGTGTTCCTTTATGTTCTTGTTAAATGATTTGTGAAAATTAATGATAAGGATTGAAATAACTGGGGAAATATAGGGATAAAAGTTGAGGGTATGGAACGGAGTATGTCAGATCCCACATCGGTTGGGGAGGAGAATGAAACATTCTTTATAAGGGTGTGGAAACTTCTTCCTAGCAGACGCGTCTTAGTAGGGAAGCCCAAAAAGGAAAGCTCAAAGAGGACAATATCTGCTAGTGGTGGGTTTGAGTTGTTACAAATGGAATTAGAGCCGGACACTAGGTGATATGCCAGCAAGGTGGCTGAGCCCTGAAGGAGGGTGGACACAAGACGGTGTACAAGCAAGGATGCTGGGCCTCGAAGAGGAGTGGATTGGGAGGTTCCACATCGATTGAAGAAGGGAACAAATGCTAGCGAGGATGCTAGGCCCCGAAGGGGGTGGACTATGAGAGACCGAAGCATTCTTTATAAGGGTGTGGAAAACTCTCTCTAGTAGATACGTTTTAAAAACGTTAAGAGAAAGTCCAAAAAGGACGGTATTTGTTAGCGGTGGGCTTGGGTATAGAGTAGGAGTTCAGGGGCAAAATTGGATTTAAAGCTAAAAAGTTATGCTATGGATTCTTAAGTTACACTTATGTCTCTTTCTCTGTCTTTTTTGTGTTGGAAAAGAGGGGCCTGTGGTAATGAAAGCTGCTGTGCCTTCAGATGTTTTTAATTATGTCAGTAAATGCTGCTAGGTCTAGAAGTACTGGGAGGGAGTTGCAGTGACAAAGGTGTCGATGGAACGAAAACAAAACCGAAGGAATACAAAGATCAGGTGTTTTCAGATGCTGTTGCAGAGTTTTCAGAGGGCATAGGACCAAACAAATCCATGGGAGATGCTTTGAATTCGGAAAGCACGTCGAAGATGGTGGCAGAGGATGAAATGAATAGCTCCCGAGCTACGAATGACACAGAAGTCCTTGGTAAGTTTAATGTTCGGGACAATTTATCTTCGTTCTTTTTCGCTCGTCTGGTCATATTGTTAGCTGTTTATGGTCAGCCAGTTTCGTATGTGTTTCGTGATCTTTCATTGCCATTGTAGGATCGACAATAGCAGCTTTTATGAGATATTTGAAGTGGGCAATTGTAACAGCCCAAACCCATAGTTTGCACCATTGTGAGATCCCACAACCGAGAGTGGAATGAAGCATGCCAGCGAGGACGTTGGTCCCCAAGGGGCTGGATTGTGAGATTCCACATTGGTTGGAGAGGGGAACGAAACATGCTAGCGAGGACGTTAGATCCCTAAGGGGGTGGATTGTGAGATCTCACATTGGTTGGAGAGGGGAACGAAGCATGCCAACGAGAATATTGGGTCCCCAAGGGGGTGAATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAGCATGCCATCTAGGATGCTGGGTCCCCAAGGAGGGGGGATTGTGAGATGCACATCAGTTGGAGAGGAAACGAAACATTCTTTATAAGGGTGTAGAAACCTCTCCCTAGTGGACGTGTTTTAAAACCGTGAGGCCGACGACGATATGTAATGGGCCAAAACGGACAATATCTGTTAGCGGTGGGTTTGGACGGTTACAACAATAATGGAAAAAGAAAACTTCTGAATCATTGAAGGGAAGGCTAGATAAACTCGTCCTTCATGCAGCAATGCCGTGCTAAGTTTCGAATAGTGTAACGAGAGCGAACGAGACCTGTTTTTTTTGCAATCTCATTTTACTGGTCTCTGTTTGAGAAATCCTGTTCTACTTCATGTTCTTCAAATTATTTTTACAATTTTTGTTGCAGAAACTACTATCCATCAGTCAGGAAGCGAGCAGGAACACGAAATTAATCAAGAACTTTTGAATATCGAGACTGACTCTCGAATTCCGTTGTCGTGTTCTTCAACTGAAAACCAAAAAGTTGAGAATTCGATTGTTGCAGAAACCGCTATCGATCGGTCAGGAAATGTGCAGGAAACCAAAGTTGATCAAGAACTTGTGAATCTTGTGACTGATTTAGGATCTCCTCTGTTCATCTCTTCAACTGAGCAGGAAACCAAATTTAATCAAGAACTTGTGGTTCTCCACGACGATCATATGAATATGACTACTGCAAGTGACTTGTACCCGATTGAACCCGAAACTATAGTGCCTCTGCAACAAGAAAGGAACATTGATAGTGCTGAAAACATGCCTCGATGCTCCTTGCCATCTCCTGATACAAGATATGATGAAAAGAAGAATGAGGGGTTCGGCTCGTTTAAAAACTCGGCAGAAATTGCTGCACTGCCGGGAAGAATGGATAATGATAAATCCGAGCCAGTTCCGAAGATGGAAGAAACCATTGAAATACCTACAGAGCCCACTGCACATAAAGGAAACGATCTAGAGTCTTGCAGTTGTCACATCTTACTTGAGACCGATGAAATAAAAGAAAGGAATGACAACGTGCATCTGCCTTCTGTGTCGAGTGACTTAAACGTTGTAGAGCGTCCTGAGGCTTTAGTTGACGATTCAAAGGACCATAAGGATCTTAAGTTAACCAATTATGTTGTACAGGATCCTCATGAAGGAGTCGGTGGTTTGGGAGACAATTTTAAGGATCCCGTTTGTGAGGAGAGTTTTTCGACTTCCCAGGCCGAGCCATTTGATCCAGCCTCAAGAGTAGCTTCTTTTGACACTGGAGTCAAGAATGTGTCTGTTGATGTGAAAGCTGATTGTACTAGGAATAGCAACGAGGAAGTCGAAGAAATTCCTGTTAAAGAAGTGAATGCAACGCAGATTAAAAGTGAACTCGGCGAAAATGAAAAGCACGATAAGAGTCGAACCTTAAGTGATGCTGCAAATTTTGGGATTGATAGTGTTCCATCAGCCTCCTTTTCACCAGAAGTTGAACCAGTGGCCTCTTCCATGCATTCTCTCGATAATCTTTCTGAAAATGTTACCGATATCGTTTCCGATGAAAACTCAGCTGCACCAACAGGTAATCTAAAGAAACTCGACGACAATGATGTTGGAATAGGAGGGGTTCTTCTAGCTGATGATGAGAACAAAGCAGGAGCATGTGGAAGACATTCGGAGGACACAGCGCAAATTTATCTTCCAGAGGAAAAGGTTTCAACAGGGATCGATTCCACGATGCTTGAATCTACCACGAACAGCAGAGAGAATAAATGTCATGCTGTTGCCGAAGAGAGAGCAAACGAATCTCATAGGAAGTTTTCTGGGACCGAAAGCGCAGACACGAAAAGTTTTGGCATTCGTTTAGTTTCAAATGCTCAGCCAAGTGTAAAAGACGACGATCATGGCAATGATCAGTCATGTAATGTTGCAGACTTTAGCGCAGTTCAAAACTCTTCCGATATCCATTCGAACAAAGAGGCGAATTTGGTATCTGTCAGTAACGAATCTGTCACGGGAAGATCAGATGCTTCTCGGGACGGCAGTGTGAGCCAGCTTGTTGGAGATGTGAGAATTACTTCTGAAACTTGGCAAGATGATACTGTGAAAAACGACGTAAAACCGCAGCTTACATCATCCCTTCTCGATGCTTCGGTCGATGCGAGTAGTCAAACTGACAGTCTTGAAGGCAACTGGGGGTCTGTCTCAGGTATTCTTATACTTTCATAGTACTTTTTATATCAAAAACTTTCTTGATAATTAGTATATTTCTTGATCATGAGGGACAGTGCTCTCAACTCAGTCAGATTTACCAGCTGTTGTTGATGGTGAAGCAACACTGCAAGCACGAGATGAAGCAGCGGGAAACAACTCAAAGAGGATGGAAGCTGCAACCAAGAGACAACATTCCGACAGATCTGATTTGTTCGAGCCACCATCTTTTATGACCTTGGTCGAACCTGAAGGTGGAGGAATCCAAAGCACAGGCGCTTCCGAAATCCAGACCGACGAAAACCAACAGCAGCCAAATCCTGCATCTCTGCAGGCTGGGTGGTTTCCCTCGTACACTCACGTTGCGAAGGACTCACCGGGACGAAAGAAGAACGAGGCAGTTATTGCGAAGGTAACAAACTGGAGCACAGGGAAGCCACACACTGCTCTCAAGAACCTTTTGGATGATGCTGCACTTGAAAACAAACAGAAATCATCGCCAACACGAAAAGAAAACCTGGCTTCAATGATTCAGAAAGACGAAAATTCGACAGAAAATAGTGTCGTCAACGCAACAGTTGGCTCTGTTACTCGGCTGAGATCGCCTGCCTCACAGTTGGGAAACAGAGAGATTCCAAATGAATGGAACTCTCCTGCAAGGTATCCATCAGCCATCCGGAGAGAAAGGAGAAAAGGGAAGCCATATTGGGCTCAGTTTGTATGCTGTTCATCAGTGCATTAG

mRNA sequence

AATGGTATGAAATGAAGGTTGAGAACAAGCACATGGAGGGCTACACAGCGTAAGCCGTCGCAGGCGCTAGTTTCTTCTTCACTGTTTGCACTGACCGCAAGGCCCGCAACCCCTTTTCTCAAAACCCCACTTCTGGACTTTTCTCCATTGCCCCCTGTTTCCCTTTCCTTTTTTCAACCCTTTCGAAACAAATATAGTGAATGAATTAATGAATTCCCATTTTCCCAAATGAATGATTCTCCCTCTTTTTAATCTCTTCGTTTTGCTTCTTCTTCGGATCTTCTCTCGCTTTCAGAAATGGAGCATCGAGATCAGAGGCAGGAGAGCCATGGAGTTCATGTTTGCAACAAATGTGGATGGCCCTTTTCTAGCTCTCATCCGAGTGCCAAACGTAGGCGTGCTCACAAGAGGGTTTGTGGAACCATTGAAGGGTTCAAGCTGGTTGAGTCTGAGGCTAATACCCTTTTGGCTGTTTCAGATAATGATGGCCATCATAATAGTTCCAGTCTAGAAGTACTGGGAGGGAGTTGCAGTGACAAAGGTGTCGATGGAACGAAAACAAAACCGAAGGAATACAAAGATCAGGTGTTTTCAGATGCTGTTGCAGAGTTTTCAGAGGGCATAGGACCAAACAAATCCATGGGAGATGCTTTGAATTCGGAAAGCACGTCGAAGATGGTGGCAGAGGATGAAATGAATAGCTCCCGAGCTACGAATGACACAGAAGTCCTTGAAACTACTATCCATCAGTCAGGAAGCGAGCAGGAACACGAAATTAATCAAGAACTTTTGAATATCGAGACTGACTCTCGAATTCCGTTGTCGTGTTCTTCAACTGAAAACCAAAAAGTTGAGAATTCGATTGTTGCAGAAACCGCTATCGATCGGTCAGGAAATGTGCAGGAAACCAAAGTTGATCAAGAACTTGTGAATCTTGTGACTGATTTAGGATCTCCTCTGTTCATCTCTTCAACTGAGCAGGAAACCAAATTTAATCAAGAACTTGTGGTTCTCCACGACGATCATATGAATATGACTACTGCAAGTGACTTGTACCCGATTGAACCCGAAACTATAGTGCCTCTGCAACAAGAAAGGAACATTGATAGTGCTGAAAACATGCCTCGATGCTCCTTGCCATCTCCTGATACAAGATATGATGAAAAGAAGAATGAGGGGTTCGGCTCGTTTAAAAACTCGGCAGAAATTGCTGCACTGCCGGGAAGAATGGATAATGATAAATCCGAGCCAGTTCCGAAGATGGAAGAAACCATTGAAATACCTACAGAGCCCACTGCACATAAAGGAAACGATCTAGAGTCTTGCAGTTGTCACATCTTACTTGAGACCGATGAAATAAAAGAAAGGAATGACAACGTGCATCTGCCTTCTGTGTCGAGTGACTTAAACGTTGTAGAGCGTCCTGAGGCTTTAGTTGACGATTCAAAGGACCATAAGGATCTTAAGTTAACCAATTATGTTGTACAGGATCCTCATGAAGGAGTCGGTGGTTTGGGAGACAATTTTAAGGATCCCGTTTGTGAGGAGAGTTTTTCGACTTCCCAGGCCGAGCCATTTGATCCAGCCTCAAGAGTAGCTTCTTTTGACACTGGAGTCAAGAATGTGTCTGTTGATGTGAAAGCTGATTGTACTAGGAATAGCAACGAGGAAGTCGAAGAAATTCCTGTTAAAGAAGTGAATGCAACGCAGATTAAAAGTGAACTCGGCGAAAATGAAAAGCACGATAAGAGTCGAACCTTAAGTGATGCTGCAAATTTTGGGATTGATAGTGTTCCATCAGCCTCCTTTTCACCAGAAGTTGAACCAGTGGCCTCTTCCATGCATTCTCTCGATAATCTTTCTGAAAATGTTACCGATATCGTTTCCGATGAAAACTCAGCTGCACCAACAGGTAATCTAAAGAAACTCGACGACAATGATGTTGGAATAGGAGGGGTTCTTCTAGCTGATGATGAGAACAAAGCAGGAGCATGTGGAAGACATTCGGAGGACACAGCGCAAATTTATCTTCCAGAGGAAAAGGTTTCAACAGGGATCGATTCCACGATGCTTGAATCTACCACGAACAGCAGAGAGAATAAATGTCATGCTGTTGCCGAAGAGAGAGCAAACGAATCTCATAGGAAGTTTTCTGGGACCGAAAGCGCAGACACGAAAAGTTTTGGCATTCGTTTAGTTTCAAATGCTCAGCCAAGTGTAAAAGACGACGATCATGGCAATGATCAGTCATGTAATGTTGCAGACTTTAGCGCAGTTCAAAACTCTTCCGATATCCATTCGAACAAAGAGGCGAATTTGGTATCTGTCAGTAACGAATCTGTCACGGGAAGATCAGATGCTTCTCGGGACGGCAGTGTGAGCCAGCTTGTTGGAGATGTGAGAATTACTTCTGAAACTTGGCAAGATGATACTGTGAAAAACGACGTAAAACCGCAGCTTACATCATCCCTTCTCGATGCTTCGGTCGATGCGAGTAGTCAAACTGACAGTCTTGAAGGCAACTGGGGGTCTGTCTCAGTGCTCTCAACTCAGTCAGATTTACCAGCTGTTGTTGATGGTGAAGCAACACTGCAAGCACGAGATGAAGCAGCGGGAAACAACTCAAAGAGGATGGAAGCTGCAACCAAGAGACAACATTCCGACAGATCTGATTTGTTCGAGCCACCATCTTTTATGACCTTGGTCGAACCTGAAGGTGGAGGAATCCAAAGCACAGGCGCTTCCGAAATCCAGACCGACGAAAACCAACAGCAGCCAAATCCTGCATCTCTGCAGGCTGGGTGGTTTCCCTCGTACACTCACGTTGCGAAGGACTCACCGGGACGAAAGAAGAACGAGGCAGTTATTGCGAAGGTAACAAACTGGAGCACAGGGAAGCCACACACTGCTCTCAAGAACCTTTTGGATGATGCTGCACTTGAAAACAAACAGAAATCATCGCCAACACGAAAAGAAAACCTGGCTTCAATGATTCAGAAAGACGAAAATTCGACAGAAAATAGTGTCGTCAACGCAACAGTTGGCTCTGTTACTCGGCTGAGATCGCCTGCCTCACAGTTGGGAAACAGAGAGATTCCAAATGAATGGAACTCTCCTGCAAGGTATCCATCAGCCATCCGGAGAGAAAGGAGAAAAGGGAAGCCATATTGGGCTCAGTTTGTATGCTGTTCATCAGTGCATTAG

Coding sequence (CDS)

ATGGAGCATCGAGATCAGAGGCAGGAGAGCCATGGAGTTCATGTTTGCAACAAATGTGGATGGCCCTTTTCTAGCTCTCATCCGAGTGCCAAACGTAGGCGTGCTCACAAGAGGGTTTGTGGAACCATTGAAGGGTTCAAGCTGGTTGAGTCTGAGGCTAATACCCTTTTGGCTGTTTCAGATAATGATGGCCATCATAATAGTTCCAGTCTAGAAGTACTGGGAGGGAGTTGCAGTGACAAAGGTGTCGATGGAACGAAAACAAAACCGAAGGAATACAAAGATCAGGTGTTTTCAGATGCTGTTGCAGAGTTTTCAGAGGGCATAGGACCAAACAAATCCATGGGAGATGCTTTGAATTCGGAAAGCACGTCGAAGATGGTGGCAGAGGATGAAATGAATAGCTCCCGAGCTACGAATGACACAGAAGTCCTTGAAACTACTATCCATCAGTCAGGAAGCGAGCAGGAACACGAAATTAATCAAGAACTTTTGAATATCGAGACTGACTCTCGAATTCCGTTGTCGTGTTCTTCAACTGAAAACCAAAAAGTTGAGAATTCGATTGTTGCAGAAACCGCTATCGATCGGTCAGGAAATGTGCAGGAAACCAAAGTTGATCAAGAACTTGTGAATCTTGTGACTGATTTAGGATCTCCTCTGTTCATCTCTTCAACTGAGCAGGAAACCAAATTTAATCAAGAACTTGTGGTTCTCCACGACGATCATATGAATATGACTACTGCAAGTGACTTGTACCCGATTGAACCCGAAACTATAGTGCCTCTGCAACAAGAAAGGAACATTGATAGTGCTGAAAACATGCCTCGATGCTCCTTGCCATCTCCTGATACAAGATATGATGAAAAGAAGAATGAGGGGTTCGGCTCGTTTAAAAACTCGGCAGAAATTGCTGCACTGCCGGGAAGAATGGATAATGATAAATCCGAGCCAGTTCCGAAGATGGAAGAAACCATTGAAATACCTACAGAGCCCACTGCACATAAAGGAAACGATCTAGAGTCTTGCAGTTGTCACATCTTACTTGAGACCGATGAAATAAAAGAAAGGAATGACAACGTGCATCTGCCTTCTGTGTCGAGTGACTTAAACGTTGTAGAGCGTCCTGAGGCTTTAGTTGACGATTCAAAGGACCATAAGGATCTTAAGTTAACCAATTATGTTGTACAGGATCCTCATGAAGGAGTCGGTGGTTTGGGAGACAATTTTAAGGATCCCGTTTGTGAGGAGAGTTTTTCGACTTCCCAGGCCGAGCCATTTGATCCAGCCTCAAGAGTAGCTTCTTTTGACACTGGAGTCAAGAATGTGTCTGTTGATGTGAAAGCTGATTGTACTAGGAATAGCAACGAGGAAGTCGAAGAAATTCCTGTTAAAGAAGTGAATGCAACGCAGATTAAAAGTGAACTCGGCGAAAATGAAAAGCACGATAAGAGTCGAACCTTAAGTGATGCTGCAAATTTTGGGATTGATAGTGTTCCATCAGCCTCCTTTTCACCAGAAGTTGAACCAGTGGCCTCTTCCATGCATTCTCTCGATAATCTTTCTGAAAATGTTACCGATATCGTTTCCGATGAAAACTCAGCTGCACCAACAGGTAATCTAAAGAAACTCGACGACAATGATGTTGGAATAGGAGGGGTTCTTCTAGCTGATGATGAGAACAAAGCAGGAGCATGTGGAAGACATTCGGAGGACACAGCGCAAATTTATCTTCCAGAGGAAAAGGTTTCAACAGGGATCGATTCCACGATGCTTGAATCTACCACGAACAGCAGAGAGAATAAATGTCATGCTGTTGCCGAAGAGAGAGCAAACGAATCTCATAGGAAGTTTTCTGGGACCGAAAGCGCAGACACGAAAAGTTTTGGCATTCGTTTAGTTTCAAATGCTCAGCCAAGTGTAAAAGACGACGATCATGGCAATGATCAGTCATGTAATGTTGCAGACTTTAGCGCAGTTCAAAACTCTTCCGATATCCATTCGAACAAAGAGGCGAATTTGGTATCTGTCAGTAACGAATCTGTCACGGGAAGATCAGATGCTTCTCGGGACGGCAGTGTGAGCCAGCTTGTTGGAGATGTGAGAATTACTTCTGAAACTTGGCAAGATGATACTGTGAAAAACGACGTAAAACCGCAGCTTACATCATCCCTTCTCGATGCTTCGGTCGATGCGAGTAGTCAAACTGACAGTCTTGAAGGCAACTGGGGGTCTGTCTCAGTGCTCTCAACTCAGTCAGATTTACCAGCTGTTGTTGATGGTGAAGCAACACTGCAAGCACGAGATGAAGCAGCGGGAAACAACTCAAAGAGGATGGAAGCTGCAACCAAGAGACAACATTCCGACAGATCTGATTTGTTCGAGCCACCATCTTTTATGACCTTGGTCGAACCTGAAGGTGGAGGAATCCAAAGCACAGGCGCTTCCGAAATCCAGACCGACGAAAACCAACAGCAGCCAAATCCTGCATCTCTGCAGGCTGGGTGGTTTCCCTCGTACACTCACGTTGCGAAGGACTCACCGGGACGAAAGAAGAACGAGGCAGTTATTGCGAAGGTAACAAACTGGAGCACAGGGAAGCCACACACTGCTCTCAAGAACCTTTTGGATGATGCTGCACTTGAAAACAAACAGAAATCATCGCCAACACGAAAAGAAAACCTGGCTTCAATGATTCAGAAAGACGAAAATTCGACAGAAAATAGTGTCGTCAACGCAACAGTTGGCTCTGTTACTCGGCTGAGATCGCCTGCCTCACAGTTGGGAAACAGAGAGATTCCAAATGAATGGAACTCTCCTGCAAGGTATCCATCAGCCATCCGGAGAGAAAGGAGAAAAGGGAAGCCATATTGGGCTCAGTTTGTATGCTGTTCATCAGTGCATTAG

Protein sequence

MEHRDQRQESHGVHVCNKCGWPFSSSHPSAKRRRAHKRVCGTIEGFKLVESEANTLLAVSDNDGHHNSSSLEVLGGSCSDKGVDGTKTKPKEYKDQVFSDAVAEFSEGIGPNKSMGDALNSESTSKMVAEDEMNSSRATNDTEVLETTIHQSGSEQEHEINQELLNIETDSRIPLSCSSTENQKVENSIVAETAIDRSGNVQETKVDQELVNLVTDLGSPLFISSTEQETKFNQELVVLHDDHMNMTTASDLYPIEPETIVPLQQERNIDSAENMPRCSLPSPDTRYDEKKNEGFGSFKNSAEIAALPGRMDNDKSEPVPKMEETIEIPTEPTAHKGNDLESCSCHILLETDEIKERNDNVHLPSVSSDLNVVERPEALVDDSKDHKDLKLTNYVVQDPHEGVGGLGDNFKDPVCEESFSTSQAEPFDPASRVASFDTGVKNVSVDVKADCTRNSNEEVEEIPVKEVNATQIKSELGENEKHDKSRTLSDAANFGIDSVPSASFSPEVEPVASSMHSLDNLSENVTDIVSDENSAAPTGNLKKLDDNDVGIGGVLLADDENKAGACGRHSEDTAQIYLPEEKVSTGIDSTMLESTTNSRENKCHAVAEERANESHRKFSGTESADTKSFGIRLVSNAQPSVKDDDHGNDQSCNVADFSAVQNSSDIHSNKEANLVSVSNESVTGRSDASRDGSVSQLVGDVRITSETWQDDTVKNDVKPQLTSSLLDASVDASSQTDSLEGNWGSVSVLSTQSDLPAVVDGEATLQARDEAAGNNSKRMEAATKRQHSDRSDLFEPPSFMTLVEPEGGGIQSTGASEIQTDENQQQPNPASLQAGWFPSYTHVAKDSPGRKKNEAVIAKVTNWSTGKPHTALKNLLDDAALENKQKSSPTRKENLASMIQKDENSTENSVVNATVGSVTRLRSPASQLGNREIPNEWNSPARYPSAIRRERRKGKPYWAQFVCCSSVH

Homology

[Close]

BLAST of CmaCh06G016040 vs. TAIR 10
Match: AT4G14200.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-11
Identity = 217/998 (21.74%), Postives = 355/998 (35.57%), Query Frame = 0


Query: 1   MEHRDQRQESHG---VHVCNKCGWPFSSSHPSAKRRRAHKRVCGTIEGFKLVESEANTLL 60
           M+ +D    S G    HVC KCGW +S+ HPSAK RRAHK++CGTI+GF++ +SE     
Sbjct: 1   MDSQDHCSNSPGGGKNHVCTKCGWSYSNPHPSAKNRRAHKKICGTIKGFEIFDSEMK--- 60

Query: 61  AVSDNDGHHNSSSLEVLGGSCSDKGVDGTKTKPKEYKDQVFSDAVAEFSEGIGPNKSMGD 120
              +N       SL+                   E K    S  V E S      K+  +
Sbjct: 61  --KENLDLPEEHSLD------------------DEQKPPTPSPTVVEKSAPTVVEKAANE 120

Query: 121 ALNSESTSKMVAEDEMNSSRATNDTEVLETTIHQSGSEQEHEINQELLNIETDSRIPLSC 180
            +   S   +  +     SR+ +  E   T     G+E   E  Q+  N  T      +C
Sbjct: 121 RIGDVSEEDVFTDAVCEFSRSDSFKEETATNFPAKGTENPGE-TQQCNNSST------AC 180

Query: 181 SSTENQKVENS-----IVAETAIDRSGNVQETKVDQELVNLVTDLGSPLFISSTEQETKF 240
               ++ V++S     +  E+A +     Q +     +              S+E   + 
Sbjct: 181 EMKSSEVVQDSCEVPPVEVESASENRQGAQHSTEGHSM--------------SSETVIES 240

Query: 241 NQELVVLHDDHMNMTTASDLYPIEPETIVPLQQERNIDSAENMPRCSLPSPDTRYDE--- 300
           +QE  V+       T ++D   +E E    L +E     A  + +    S  +  DE   
Sbjct: 241 SQEAQVIDGGD---TISND--RLETECKGKLTKESQSKLASALGKREDTSDSSWNDEVIY 300

Query: 301 KKNEGFGSFKNSAEIAALPGRMDNDKSEPVPKMEETIEIPTEPTAHKGNDLESCSCHILL 360
              EG   F + A     P       SE VP       + T P       + S S     
Sbjct: 301 SDVEGPYGFSSEATSMTHPDEASCIVSEDVP-------VHTSPVKADATQVISAS----- 360

Query: 361 ETDEIKERNDNVHLPSVSSDLNVVERPEALVDDSKDHKDLKLTNYVVQDPHEGVGGLGDN 420
                          SV  D+  VE  +  +   K  ++ ++++ V              
Sbjct: 361 --------------KSVPDDMPFVENADVYLHGIKGFEEFEVSHSV-------------- 420

Query: 421 FKDPVCEESFSTSQAEPFDPASRVASFDTGVKNVSVDVKADCTRNSNEEVEEIPVKEVNA 480
                           PF P +                      +  EE E         
Sbjct: 421 ---------------NPFLPET----------------------SKGEECE--------- 480

Query: 481 TQIKSELGENEKHDKSRTLSDAANFGIDSVPSASFSPEVEPVASSMHSLDNL-------S 540
                            TL++A N GI         PE   + S + S D L        
Sbjct: 481 ---------------IDTLTEAENLGI--------KPEGLSIGSEVSSSDKLLAGDKTEP 540

Query: 541 ENVTDIVS-DENSAAPTGNLKKLDDNDVGIGGVLLADDENKAGACGRHSEDTAQIYLPEE 600
           +  TD+V+  E  +A    + K++  D+G+      + ++  G       +T ++ LP  
Sbjct: 541 QGQTDLVAVKEFPSAENILISKINSEDIGMKA---EEGKSSLGNAQTVESETLRVSLP-- 600

Query: 601 KVSTGIDSTMLESTT--NSRENKCHAVAEERANESHRKFSGTESADTKSFGIRLVSNAQP 660
                +DS +++S    +S  NK   V            +G ES   ++  +    N   
Sbjct: 601 ----AVDSVVVDSNADMSSAANKTGLV----------DLAGNESELMQANVVAEKGNK-- 660

Query: 661 SVKDDDHGNDQSCNVADFSAVQNSSD----IHSNKEANLVSVSNESVTGRSDASRDGSVS 720
               D   ++ SC  +  S V   SD    I S+ E +  S    S   + +  R+ +  
Sbjct: 661 --PKDTLSSESSCYASPVSVVFEGSDASDQIKSSTETSKDSALQISAESKDEVCRESNNG 720

Query: 721 QLVGDVRITSETWQDDTVKNDVKPQLTSSLLDASVDASSQTDSLEGNWGSVSVLSTQSDL 780
           +LV +    +E    +  +  +    ++     +V+ ++QT          S+   +++ 
Sbjct: 721 RLVEESSFINE---PNKTEYPISHFGSTGTAPDTVNTANQT----------SLEIGRTEF 780

Query: 781 PAVVDGEATLQARDEAAGN---NSKRMEAATKRQHSDRSDLFEPPSFMTLVEPEGGGIQS 840
             VV G   +QA +E  GN   ++   E     + +D  D      F  L       I+S
Sbjct: 781 NRVVGGLGVIQA-NEVDGNVKAHNNYAEVPVTIESNDHRD------FGRLQNLSEAHIRS 783

Query: 841 TGASEIQTDENQQQPNPASLQAGWFPSYTHVAKDSPGRKKNEAVIAKVTNWSTGK-PHTA 900
             +S + T  N    + ++L      S   V K     +  E  + K T+W T K  H  
Sbjct: 841 LVSSPLVTRNNTSNASESNLGPVSGLS-AGVNKQEDASQNQEITLEKTTSWGTAKEQHVP 783

Query: 901 LKNLLDDAALENKQKSSPTRKENLASMIQKDENSTENSVVNATVGSVTRLRSPASQLGNR 960
           LKNLL +A     Q+ +            KD  S     V++ +G  T           R
Sbjct: 901 LKNLLSEARSPRLQQQA------------KDHESNNIPRVSSILGQETS-PEDGHWPEKR 783

Query: 961 EIPNEWNSPARYPSAIRRERR--KGKPYWAQFVCCSSV 968
           E+  EWNSPA+YP  ++RE +  KG+P+W  FVCCS+V
Sbjct: 961 EVSEEWNSPAKYPVDLKREEKKVKGRPFWVPFVCCSNV 783

The following BLAST results are available for this feature:

BLAST of CmaCh06G016040 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G016040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14200.1	1.9e-11	21.74	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 769..797
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 273..295
None	No IPR available	PANTHER	PTHR35746:SF1	PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN	coord: 1..968
None	No IPR available	PANTHER	PTHR35746	PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN	coord: 1..968

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G016040.1	CmaCh06G016040.1	mRNA