CmaCh06G015460 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G015460
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	heavy metal-associated isoprenylated plant protein 35-like
Location	Cma_Chr06: 9688535 .. 9690178 (-)
RNA-Seq Expression	CmaCh06G015460
Synteny	CmaCh06G015460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATCCCTCTCTTTGTGTTCTTTCCCCTTTCCTCTCCCTCATGATTCCCGAGCTCGAGGTATTCTTCCTCTTCTTCTTGTTCTTGTTCGTGTTCGTATGAACTATCATCATTTCATTCATTTTTGTTCTTCTGCAGAAACCGAAGATTCTTGAGATAAAGGTCCGAATGGACTGTAATGGGTGTGTTCAGAAGATCAAGAAGGCGTTGTATGGAATCAATGGTGAGTTAAATGAACCGGGATTCTTTGTGTTTTTTGTTTTTCACATGTTTGTGTCTTGTTCATCGATTTCTTGGCCTGTTGCAGGCATTTACGATATCTACATAGACTTTCCCCAACAGAAGTTGACAATCATTGGATGGGCTGATCCAGACAGAATCATGAAAGCCATTAAGAAAACCAGGAAGATAGCCACCATTTGTTCCGAGTATGAACAGGCAGATCCACAAGCTTCTACTCAACTCCCTGATAATCCACTGCCTTCTGGTGGCGAAGCGGAAGCTCCTACTCCGTCGCATGATGTGGCGATGGTCGATGGGCTACCTGGACATTCACACGCTGAGGTAGCACCTGGCCAGACGACCGTCCACGAAGCTCATTCGGGCCAACAGTTTGATTTGACCAATGCTACCAACCAACAAGCAACACAGCCTCTTGGCTCACATGAGGTCGGACAGGTTCATGTTACTCACAACCAGCCATCACAACACGGCCATGTCGTCCATCAAAGTTCCTTGGAACCCGGTGATGTCCACCACCTAGGACCAGAGTCTGGCCATGTCGTCTCACATCAACCTGAGAATAGCCATGTGGCTCATCAACTACCAGAACATGGCCATGTAGGCCATCAACAGTCACCCATCAACGGGTACGTGGTTCACCAACATCAACCTGAGCATAGCCATGTAGTAAGCCATCATCAACCACCTGATCACGGCCACGTAATCCACCAACAGCCACCCGAGCATAGCCACAGCCACCCAACTGAACACAGCCATGACCATGTAGTCCAACACCACCAATCCGAACAAGGCCATGGACGCACCTCAAGCCACAACTACCACCACAATATCCCACGAACAATTCACGGGTCGACATCGACACATCCAATGACAGTGATACACAGCTACAACACATACCAGCCATCACCATACGTAACAGAGTACATCCGTCCATTGACAACCCACAGGCCCTCCCCATATGCCTATGAATACATACCACAGCAGTCATCCTCCACCCATTATAGCCCGAGAATGGACCGTTACAATGACGACTATAACAACACAGGCATAAGCAACAACAACAATGGGAACATCACATCAATATTCAGCGACGAGAATCCGAACGCTTGTAATCTAATGTAAAGTAAATTGAAGGGGAAGTGATTTAATGAAGGAAGAGTTTTTGATGAACACGCAAGAGAAGAACACGAATAAGATTCCAAACGTGGGAGTGGTGGGAGAATCTGATCCTAAAATTCTAACTTTTTGATGATGGGTTGATATGATAAACCAGGTGAAGAACATTCTTGTAAAGGCGACGTAGGGAATCTTGTAAAGTTGTAAAGATTTTTATGGCTTCAATGGCTGACAGATGTTTACAGAAACAATGATTTTTATAGCTTTAATACTTTCTGATATATAAC

mRNA sequence

TAATCCCTCTCTTTGTGTTCTTTCCCCTTTCCTCTCCCTCATGATTCCCGAGCTCGAGAAACCGAAGATTCTTGAGATAAAGGTCCGAATGGACTGTAATGGGTGTGTTCAGAAGATCAAGAAGGCGTTGTATGGAATCAATGGCATTTACGATATCTACATAGACTTTCCCCAACAGAAGTTGACAATCATTGGATGGGCTGATCCAGACAGAATCATGAAAGCCATTAAGAAAACCAGGAAGATAGCCACCATTTGTTCCGAGTATGAACAGGCAGATCCACAAGCTTCTACTCAACTCCCTGATAATCCACTGCCTTCTGGTGGCGAAGCGGAAGCTCCTACTCCGTCGCATGATGTGGCGATGGTCGATGGGCTACCTGGACATTCACACGCTGAGGTAGCACCTGGCCAGACGACCGTCCACGAAGCTCATTCGGGCCAACAGTTTGATTTGACCAATGCTACCAACCAACAAGCAACACAGCCTCTTGGCTCACATGAGGTCGGACAGGTTCATGTTACTCACAACCAGCCATCACAACACGGCCATGTCGTCCATCAAAGTTCCTTGGAACCCGGTGATGTCCACCACCTAGGACCAGAGTCTGGCCATGTCGTCTCACATCAACCTGAGAATAGCCATGTGGCTCATCAACTACCAGAACATGGCCATGTAGGCCATCAACAGTCACCCATCAACGGGTACGTGGTTCACCAACATCAACCTGAGCATAGCCATGTAGTAAGCCATCATCAACCACCTGATCACGGCCACGTAATCCACCAACAGCCACCCGAGCATAGCCACAGCCACCCAACTGAACACAGCCATGACCATGTAGTCCAACACCACCAATCCGAACAAGGCCATGGACGCACCTCAAGCCACAACTACCACCACAATATCCCACGAACAATTCACGGGTCGACATCGACACATCCAATGACAGTGATACACAGCTACAACACATACCAGCCATCACCATACGTAACAGAGTACATCCGTCCATTGACAACCCACAGGCCCTCCCCATATGCCTATGAATACATACCACAGCAGTCATCCTCCACCCATTATAGCCCGAGAATGGACCGTTACAATGACGACTATAACAACACAGGCATAAGCAACAACAACAATGGGAACATCACATCAATATTCAGCGACGAGAATCCGAACGCTTGTAATCTAATGTAAAGTAAATTGAAGGGGAAGTGATTTAATGAAGGAAGAGTTTTTGATGAACACGCAAGAGAAGAACACGAATAAGATTCCAAACGTGGGAGTGGTGGGAGAATCTGATCCTAAAATTCTAACTTTTTGATGATGGGTTGATATGATAAACCAGGTGAAGAACATTCTTGTAAAGGCGACGTAGGGAATCTTGTAAAGTTGTAAAGATTTTTATGGCTTCAATGGCTGACAGATGTTTACAGAAACAATGATTTTTATAGCTTTAATACTTTCTGATATATAAC

Coding sequence (CDS)

ATGATTCCCGAGCTCGAGAAACCGAAGATTCTTGAGATAAAGGTCCGAATGGACTGTAATGGGTGTGTTCAGAAGATCAAGAAGGCGTTGTATGGAATCAATGGCATTTACGATATCTACATAGACTTTCCCCAACAGAAGTTGACAATCATTGGATGGGCTGATCCAGACAGAATCATGAAAGCCATTAAGAAAACCAGGAAGATAGCCACCATTTGTTCCGAGTATGAACAGGCAGATCCACAAGCTTCTACTCAACTCCCTGATAATCCACTGCCTTCTGGTGGCGAAGCGGAAGCTCCTACTCCGTCGCATGATGTGGCGATGGTCGATGGGCTACCTGGACATTCACACGCTGAGGTAGCACCTGGCCAGACGACCGTCCACGAAGCTCATTCGGGCCAACAGTTTGATTTGACCAATGCTACCAACCAACAAGCAACACAGCCTCTTGGCTCACATGAGGTCGGACAGGTTCATGTTACTCACAACCAGCCATCACAACACGGCCATGTCGTCCATCAAAGTTCCTTGGAACCCGGTGATGTCCACCACCTAGGACCAGAGTCTGGCCATGTCGTCTCACATCAACCTGAGAATAGCCATGTGGCTCATCAACTACCAGAACATGGCCATGTAGGCCATCAACAGTCACCCATCAACGGGTACGTGGTTCACCAACATCAACCTGAGCATAGCCATGTAGTAAGCCATCATCAACCACCTGATCACGGCCACGTAATCCACCAACAGCCACCCGAGCATAGCCACAGCCACCCAACTGAACACAGCCATGACCATGTAGTCCAACACCACCAATCCGAACAAGGCCATGGACGCACCTCAAGCCACAACTACCACCACAATATCCCACGAACAATTCACGGGTCGACATCGACACATCCAATGACAGTGATACACAGCTACAACACATACCAGCCATCACCATACGTAACAGAGTACATCCGTCCATTGACAACCCACAGGCCCTCCCCATATGCCTATGAATACATACCACAGCAGTCATCCTCCACCCATTATAGCCCGAGAATGGACCGTTACAATGACGACTATAACAACACAGGCATAAGCAACAACAACAATGGGAACATCACATCAATATTCAGCGACGAGAATCCGAACGCTTGTAATCTAATGTAA

Protein sequence

MIPELEKPKILEIKVRMDCNGCVQKIKKALYGINGIYDIYIDFPQQKLTIIGWADPDRIMKAIKKTRKIATICSEYEQADPQASTQLPDNPLPSGGEAEAPTPSHDVAMVDGLPGHSHAEVAPGQTTVHEAHSGQQFDLTNATNQQATQPLGSHEVGQVHVTHNQPSQHGHVVHQSSLEPGDVHHLGPESGHVVSHQPENSHVAHQLPEHGHVGHQQSPINGYVVHQHQPEHSHVVSHHQPPDHGHVIHQQPPEHSHSHPTEHSHDHVVQHHQSEQGHGRTSSHNYHHNIPRTIHGSTSTHPMTVIHSYNTYQPSPYVTEYIRPLTTHRPSPYAYEYIPQQSSSTHYSPRMDRYNDDYNNTGISNNNNGNITSIFSDENPNACNLM

Homology

[Close]

BLAST of CmaCh06G015460 vs. ExPASy Swiss-Prot
Match: O65657 (Heavy metal-associated isoprenylated plant protein 23 OS=Arabidopsis thaliana OX=3702 GN=HIPP23 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.6e-09
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 11 LEIKVRMDCNGCVQKIKKALYGINGIYDIYIDFPQQKLTIIGWADPDRIMKAIKKTRKIA 70
          +E+KVRMDC+GCV KIK +L  + G+  + I+  QQK+T+ G+AD  +++K  K T K A
Sbjct: 34 VELKVRMDCDGCVLKIKNSLSSLKGVKTVEINKKQQKVTVSGYADASKVLKKAKATGKKA 93

Query: 71 TI 73
           I
Sbjct: 94 EI 95

[Close]

BLAST of CmaCh06G015460 vs. ExPASy Swiss-Prot
Match: F4IC29 (Heavy metal-associated isoprenylated plant protein 28 OS=Arabidopsis thaliana OX=3702 GN=HIPP28 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-07
Identity = 40/147 (27.21%), Postives = 70/147 (47.62%), Query Frame = 0


Query: 11  LEIKVRMDCNGCVQKIKKALYGINGIYDIYIDFPQQKLTIIGWADPDRIMKAIKKTRKIA 70
           +E++V MDC GC  ++K AL  + G+  + ID  QQK+T+ G+AD  +++K ++KT + A
Sbjct: 13  IEMRVHMDCVGCESRVKNALQKMRGVDAVEIDMVQQKVTVTGYADQKKVLKKVRKTGRRA 72

Query: 71  TICSEYEQADPQASTQLPDNPLPSGGEAEAPTPSHDVAMVDGLPGHSHAEVAPGQTTVHE 130
            +             QLP NP   GG +      ++    +G    +HA   P  +  + 
Sbjct: 73  EL------------WQLPYNPDHMGGSSSNGGYFYNPQGCNG--PINHAAPVPTSSYNYY 132

Query: 131 AHSGQQFDLTNATNQQATQPLGSHEVG 158
            H     D ++  +      + SH+ G
Sbjct: 133 KHGYDSNDYSSYRHHPVHASIFSHQTG 145

[Close]

BLAST of CmaCh06G015460 vs. ExPASy Swiss-Prot
Match: O81464 (Heavy metal-associated isoprenylated plant protein 24 OS=Arabidopsis thaliana OX=3702 GN=HIPP24 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-07
Identity = 22/53 (41.51%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 16 RMDCNGCVQKIKKALYGINGIYDIYIDFPQQKLTIIGWADPDRIMKAIKKTRK 69
          R+DC GC +KIK  L G+ G+  + +D   QK+T+ G+ DP ++++A K T+K
Sbjct: 34 RIDCEGCERKIKHVLSGVKGVKSVDVDVKLQKVTVTGYIDPKKVLEAAKSTKK 86

[Close]

BLAST of CmaCh06G015460 vs. ExPASy Swiss-Prot
Match: B3H6D0 (Heavy metal-associated isoprenylated plant protein 45 OS=Arabidopsis thaliana OX=3702 GN=HIPP45 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-07
Identity = 22/61 (36.07%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 10 ILEIKVRMDCNGCVQKIKKALYGINGIYDIYIDFPQQKLTIIGWADPDRIMKAIKKTRKI 69
          I+E+ V MDC GC +K+++A+  ++G+  + ID  +QK+T+ G+ D + ++K +K+T + 
Sbjct: 17 IVELLVDMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTGYVDREEVLKMVKRTGRT 76

Query: 70 A 71
          A
Sbjct: 77 A 77

[Close]

BLAST of CmaCh06G015460 vs. ExPASy Swiss-Prot
Match: Q9LP41 (Heavy metal-associated isoprenylated plant protein 29 OS=Arabidopsis thaliana OX=3702 GN=HIPP29 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.5e-07
Identity = 22/56 (39.29%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 13 IKVRMDCNGCVQKIKKALYGINGIYDIYIDFPQQKLTIIGWADPDRIMKAIKKTRK 69
          ++V MDC GC  K++KAL  +NG++D+ ID  QQ++T+ G A+  +++K  +   K
Sbjct: 1  MEVPMDCPGCENKVRKALEKMNGVHDVQIDIKQQRVTVTGSAEQKKVLKVARNVTK 56

[Close]

BLAST of CmaCh06G015460 vs. TAIR 10
Match: AT4G39700.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-10
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 11 LEIKVRMDCNGCVQKIKKALYGINGIYDIYIDFPQQKLTIIGWADPDRIMKAIKKTRKIA 70
          +E+KVRMDC+GCV KIK +L  + G+  + I+  QQK+T+ G+AD  +++K  K T K A
Sbjct: 34 VELKVRMDCDGCVLKIKNSLSSLKGVKTVEINKKQQKVTVSGYADASKVLKKAKATGKKA 93

Query: 71 TI 73
           I
Sbjct: 94 EI 95

[Close]

BLAST of CmaCh06G015460 vs. TAIR 10
Match: AT1G06330.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 1.0e-08
Identity = 40/147 (27.21%), Postives = 70/147 (47.62%), Query Frame = 0


Query: 11  LEIKVRMDCNGCVQKIKKALYGINGIYDIYIDFPQQKLTIIGWADPDRIMKAIKKTRKIA 70
           +E++V MDC GC  ++K AL  + G+  + ID  QQK+T+ G+AD  +++K ++KT + A
Sbjct: 13  IEMRVHMDCVGCESRVKNALQKMRGVDAVEIDMVQQKVTVTGYADQKKVLKKVRKTGRRA 72

Query: 71  TICSEYEQADPQASTQLPDNPLPSGGEAEAPTPSHDVAMVDGLPGHSHAEVAPGQTTVHE 130
            +             QLP NP   GG +      ++    +G    +HA   P  +  + 
Sbjct: 73  EL------------WQLPYNPDHMGGSSSNGGYFYNPQGCNG--PINHAAPVPTSSYNYY 132

Query: 131 AHSGQQFDLTNATNQQATQPLGSHEVG 158
            H     D ++  +      + SH+ G
Sbjct: 133 KHGYDSNDYSSYRHHPVHASIFSHQTG 145

[Close]

BLAST of CmaCh06G015460 vs. TAIR 10
Match: AT3G56891.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-08
Identity = 22/61 (36.07%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 10 ILEIKVRMDCNGCVQKIKKALYGINGIYDIYIDFPQQKLTIIGWADPDRIMKAIKKTRKI 69
          I+E+ V MDC GC +K+++A+  ++G+  + ID  +QK+T+ G+ D + ++K +K+T + 
Sbjct: 17 IVELLVDMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTGYVDREEVLKMVKRTGRT 76

Query: 70 A 71
          A
Sbjct: 77 A 77

[Close]

BLAST of CmaCh06G015460 vs. TAIR 10
Match: AT4G08570.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-08
Identity = 22/53 (41.51%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 16 RMDCNGCVQKIKKALYGINGIYDIYIDFPQQKLTIIGWADPDRIMKAIKKTRK 69
          R+DC GC +KIK  L G+ G+  + +D   QK+T+ G+ DP ++++A K T+K
Sbjct: 34 RIDCEGCERKIKHVLSGVKGVKSVDVDVKLQKVTVTGYIDPKKVLEAAKSTKK 86

[Close]

BLAST of CmaCh06G015460 vs. TAIR 10
Match: AT1G29100.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 3.9e-08
Identity = 22/56 (39.29%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 13 IKVRMDCNGCVQKIKKALYGINGIYDIYIDFPQQKLTIIGWADPDRIMKAIKKTRK 69
          ++V MDC GC  K++KAL  +NG++D+ ID  QQ++T+ G A+  +++K  +   K
Sbjct: 1  MEVPMDCPGCENKVRKALEKMNGVHDVQIDIKQQRVTVTGSAEQKKVLKVARNVTK 56

The following BLAST results are available for this feature:

BLAST of CmaCh06G015460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65657	2.6e-09	46.77	Heavy metal-associated isoprenylated plant protein 23 OS=Arabidopsis thaliana OX...	[more]
F4IC29	1.4e-07	27.21	Heavy metal-associated isoprenylated plant protein 28 OS=Arabidopsis thaliana OX...	[more]
O81464	1.9e-07	41.51	Heavy metal-associated isoprenylated plant protein 24 OS=Arabidopsis thaliana OX...	[more]
B3H6D0	1.9e-07	36.07	Heavy metal-associated isoprenylated plant protein 45 OS=Arabidopsis thaliana OX...	[more]
Q9LP41	5.5e-07	39.29	Heavy metal-associated isoprenylated plant protein 29 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmaCh06G015460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39700.1	1.9e-10	46.77	Heavy metal transport/detoxification superfamily protein	[more]
AT1G06330.1	1.0e-08	27.21	Heavy metal transport/detoxification superfamily protein	[more]
AT3G56891.1	1.3e-08	36.07	Heavy metal transport/detoxification superfamily protein	[more]
AT4G08570.1	1.3e-08	41.51	Heavy metal transport/detoxification superfamily protein	[more]
AT1G29100.1	3.9e-08	39.29	Heavy metal transport/detoxification superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006121	Heavy metal-associated domain, HMA	PFAM	PF00403	HMA	coord: 14..66 e-value: 4.4E-11 score: 43.0
IPR006121	Heavy metal-associated domain, HMA	PROSITE	PS50846	HMA_2	coord: 17..72 score: 11.392475
IPR006121	Heavy metal-associated domain, HMA	CDD	cd00371	HMA	coord: 12..71 e-value: 8.8613E-12 score: 58.0009
None	No IPR available	GENE3D	3.30.70.100		coord: 8..72 e-value: 3.8E-16 score: 61.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 283..302
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..302
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..120
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 1..385
None	No IPR available	PANTHER	PTHR22814:SF320	OJ1116_C07.8 PROTEIN	coord: 1..385
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 10..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G015460.1	CmaCh06G015460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding