CmaCh06G013690 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G013690
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	early light-induced protein 1, chloroplastic-like
Location	Cma_Chr06: 8942563 .. 8943760 (+)
RNA-Seq Expression	CmaCh06G013690
Synteny	CmaCh06G013690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGACGTGGAACCTAAATATCCACCACTCCCTGCCCCATCCTCCGTTATATAAACCCCGCGGAGCTTCTGATCTTCACCATCATAGTAGCGCTCCACCGCTCAACACGATAATTTTCATTGCTCCTTGATCGATCACTGCCCTTAATTTCCGCCCTTCCTCTGCTCCGCTGACGTTGAACTCCCAGGAACTGAGCGAAATGGCCACTTCTGCATTGTTACAAGCCATTCCGGTGAGCTCGGCATCTCGAACTACCTTTAGGACACCAACGAACCGGTTGTGTTCAAGGAGGACGGCCTCCTTCCGTGTGCGATGCACGGCGGAGGTAATCATTATTTCCTTCCTTCCTGTCTTCACTTTTATTCTTTGTATATACATCCTAGGGCTTAATGTATGTCTAAATCTGTTTATTCGACTGGACTCTCAGGAGGAGCAGAGAGAGCAAGCGATTCCTACTCCAGCTCCGCCGACGTCAAATCCGTCCCCCCCGCCACCGTCTCCGAAGCCGAAGGTAAACAATCCTGTTACACTCACCAGCCGTTCTCAATCGACGGATCGAAACGTAACAGATGTAGATGAACATTGTCTTTAAATATCATCGTTAATTTCGAATCTAATAATGCGATCCGCAGGTGAGCACGAAATTCTCGGATGTCCTAGCATTCAGCGGGCCAGCGCCAGAGAGAATCAACGGGCGGCTAGCAATGATCGGCTTTGTGGCCGCTGTAGCGGTTGAGGCATGGAAAGGTCAGGATGTTTTGGAGCAAATAGGCAACGGAGGAATTCCATGGTTTGTGGGAACAAGCGTGGTTTTGACACTGGCATCGCTGATACCTCTATTTAAAGGGGTGAGCGTGGAGTCTAAGTCGAAGGGGCTTATGACATCCGACGCTGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGGCTCGTAGCTTTGGCCTTCACTGAATTTGTTAAGGGTGGAAGCCTCGTGTAGGTTGTAGTTCTGAGATGTAGTTTCCATGTCTCTTAAGAGAATTACGAATGTGTTACTTATATTACTAGTAATACTTCTTCGTTTGCCTATTATGTCATATTTGTGTTTGTCCCAATTGCCACCATTATGTGTAACAATAGCTATTAGTGCACTAATTAACATTTAATTTAAACATATTAGGACTCAGTTTATAATAGGAATAATTATGAACCCATCAACTCC

mRNA sequence

CTGACGTGGAACCTAAATATCCACCACTCCCTGCCCCATCCTCCGTTATATAAACCCCGCGGAGCTTCTGATCTTCACCATCATAGTAGCGCTCCACCGCTCAACACGATAATTTTCATTGCTCCTTGATCGATCACTGCCCTTAATTTCCGCCCTTCCTCTGCTCCGCTGACGTTGAACTCCCAGGAACTGAGCGAAATGGCCACTTCTGCATTGTTACAAGCCATTCCGGTGAGCTCGGCATCTCGAACTACCTTTAGGACACCAACGAACCGGTTGTGTTCAAGGAGGACGGCCTCCTTCCGTGTGCGATGCACGGCGGAGGAGGAGCAGAGAGAGCAAGCGATTCCTACTCCAGCTCCGCCGACGTCAAATCCGTCCCCCCCGCCACCGTCTCCGAAGCCGAAGGTGAGCACGAAATTCTCGGATGTCCTAGCATTCAGCGGGCCAGCGCCAGAGAGAATCAACGGGCGGCTAGCAATGATCGGCTTTGTGGCCGCTGTAGCGGTTGAGGCATGGAAAGGTCAGGATGTTTTGGAGCAAATAGGCAACGGAGGAATTCCATGGTTTGTGGGAACAAGCGTGGTTTTGACACTGGCATCGCTGATACCTCTATTTAAAGGGGTGAGCGTGGAGTCTAAGTCGAAGGGGCTTATGACATCCGACGCTGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGGCTCGTAGCTTTGGCCTTCACTGAATTTGTTAAGGGTGGAAGCCTCGTGTAGGTTGTAGTTCTGAGATGTAGTTTCCATGTCTCTTAAGAGAATTACGAATGTGTTACTTATATTACTAGTAATACTTCTTCGTTTGCCTATTATGTCATATTTGTGTTTGTCCCAATTGCCACCATTATGTGTAACAATAGCTATTAGTGCACTAATTAACATTTAATTTAAACATATTAGGACTCAGTTTATAATAGGAATAATTATGAACCCATCAACTCC

Coding sequence (CDS)

ATGGCCACTTCTGCATTGTTACAAGCCATTCCGGTGAGCTCGGCATCTCGAACTACCTTTAGGACACCAACGAACCGGTTGTGTTCAAGGAGGACGGCCTCCTTCCGTGTGCGATGCACGGCGGAGGAGGAGCAGAGAGAGCAAGCGATTCCTACTCCAGCTCCGCCGACGTCAAATCCGTCCCCCCCGCCACCGTCTCCGAAGCCGAAGGTGAGCACGAAATTCTCGGATGTCCTAGCATTCAGCGGGCCAGCGCCAGAGAGAATCAACGGGCGGCTAGCAATGATCGGCTTTGTGGCCGCTGTAGCGGTTGAGGCATGGAAAGGTCAGGATGTTTTGGAGCAAATAGGCAACGGAGGAATTCCATGGTTTGTGGGAACAAGCGTGGTTTTGACACTGGCATCGCTGATACCTCTATTTAAAGGGGTGAGCGTGGAGTCTAAGTCGAAGGGGCTTATGACATCCGACGCTGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGGCTCGTAGCTTTGGCCTTCACTGAATTTGTTAAGGGTGGAAGCCTCGTGTAG

Protein sequence

MATSALLQAIPVSSASRTTFRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNPSPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV

Homology

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BLAST of CmaCh06G013690 vs. ExPASy Swiss-Prot
Match: P93735 (Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP1 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-52
Identity = 118/185 (63.78%), Postives = 139/185 (75.14%), Query Frame = 0


Query: 12  VSSASRTTFRTPTNRLCS-------RRTASFRVRCTAE-EEQREQAIPTPAPPTSNPSP- 71
           V +   TT +  TN+L S       +R     VRC AE     E + P P+   + P P 
Sbjct: 11  VFAGGLTTRKINTNKLFSAGSFPNLKRNYPVGVRCMAEGGPTNEDSSPAPSTSAAQPLPK 70

Query: 72  ---PPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNG 131
              PPP  KPKVSTKFSD+LAFSGPAPERINGRLAM+GFVAA+AVE  KG++VL QI +G
Sbjct: 71  SPSPPPPMKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKGENVLAQISDG 130

Query: 132 GIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVK 185
           G+ WF+GT+ +LTLASL+PLFKG+SVESKSKG+MTSDAELWNGRFAMLGLVALAFTEFVK
Sbjct: 131 GVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAMLGLVALAFTEFVK 190

[Close]

BLAST of CmaCh06G013690 vs. ExPASy Swiss-Prot
Match: Q94K66 (Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP2 PE=1 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.8e-49
Identity = 111/193 (57.51%), Postives = 145/193 (75.13%), Query Frame = 0


Query: 1   MATSAL-LQAIPVSSASRTTFRT--PTNRLCSRRTASFRVRCTAEEE--QREQAIPTPA- 60
           MAT++  +Q++  + +   T R    TN+L  +R A   VRC A+ +  + + ++P+ + 
Sbjct: 1   MATASFNMQSVFAAPSGVLTTRNIRNTNQLFFKRIAPVGVRCMAQGDPIKEDPSVPSTST 60

Query: 61  ---PPTSNPSPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQD 120
              PP    SPPPP  KPKVSTKF D+LAFSGPAPERINGRLAM+GFVAA+A+E  KG++
Sbjct: 61  SATPPQMPQSPPPPVSKPKVSTKFGDLLAFSGPAPERINGRLAMVGFVAAIAMELSKGEN 120

Query: 121 VLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVA 180
           V  QI +GG+ WF+GT+ +LTLAS++PLFKG+  E+KSKG MTSDAELWNGRFAMLGLVA
Sbjct: 121 VFAQISDGGVGWFLGTTALLTLASMVPLFKGIRAEAKSKGFMTSDAELWNGRFAMLGLVA 180

Query: 181 LAFTEFVKGGSLV 185
           LAFTE+V GG+LV
Sbjct: 181 LAFTEYVTGGTLV 193

[Close]

BLAST of CmaCh06G013690 vs. ExPASy Swiss-Prot
Match: P11432 (Early light-induced protein, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.8e-47
Identity = 114/197 (57.87%), Postives = 138/197 (70.05%), Query Frame = 0


Query: 1   MATSALLQAIPVSSASRTTFRTPTNRLCS---------RRTASFRVRCTAEEEQREQAIP 60
           MA S+  Q+I  +S +  + R+  N+  +         RR  S +VR  AE E +EQ+  
Sbjct: 1   MAVSS-CQSIMSNSMTNISSRSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKV 60

Query: 61  TPAPPTSNPSPPPPSP----KPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAW 120
              P T   S P P P     PK+STKFSD++AFSGPAPERINGRLAMIGFVAA+ VE  
Sbjct: 61  AVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIA 120

Query: 121 KGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAML 180
           KGQ + EQ+  GG+ WF+GTSV+L+LASLIP F+GVSVESKSK +M+SDAE WNGR AML
Sbjct: 121 KGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAML 180

Query: 181 GLVALAFTEFVKGGSLV 185
           GLVALAFTEFVKG SLV
Sbjct: 181 GLVALAFTEFVKGTSLV 196

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BLAST of CmaCh06G013690 vs. ExPASy Swiss-Prot
Match: Q01931 (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum OX=4153 GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.0e-35
Identity = 83/156 (53.21%), Postives = 109/156 (69.87%), Query Frame = 0


Query: 30  RRTASFRVRCTAEEEQREQAIPTPAPPTSNPSPPPPSPKPKVSTKFS-DVLAFSGPAPER 89
           RR A F VR   E+ ++E+        T +  P     + +V+TK + D+ +F G APER
Sbjct: 42  RRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPER 101

Query: 90  INGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESK 149
           INGR AMIGFVAAV VE   G+DV  Q+ NGG+ WF+ TS VL LA+LIP+++G+S E+K
Sbjct: 102 INGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAK 161

Query: 150 SKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           + G   SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct: 162 NNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197

[Close]

BLAST of CmaCh06G013690 vs. ExPASy Swiss-Prot
Match: P14895 (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.6e-34
Identity = 83/151 (54.97%), Postives = 110/151 (72.85%), Query Frame = 0


Query: 40  TAEEEQREQAIPTPAPPTS-NPSPPPPSPKP---KVSTKFSDVLAFSGPAPERINGRLAM 99
           +A+E       P+P+  TS +P+  P +PKP   K +    D LAFSGPAPERINGRLAM
Sbjct: 79  SAKETTSASTSPSPSQYTSPSPTTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLAM 138

Query: 100 IGFVAAVAVEAWKGQDVLEQIG--NGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLM 159
           +GFVAA++VEA +G  +L+Q+G  + G+ WF+ T+ V ++ASL+PL +G SVESKS G+ 
Sbjct: 139 VGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIW 198

Query: 160 TSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct: 199 SADAELWNGRFAMLGLVALAATEFITGAPFV 229

[Close]

BLAST of CmaCh06G013690 vs. ExPASy TrEMBL
Match: A0A6J1IB88 (early light-induced protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111473077 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.2e-92
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MATSALLQAIPVSSASRTTFRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP 60
           MATSALLQAIPVSSASRTTFRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP
Sbjct: 1   MATSALLQAIPVSSASRTTFRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP 60

Query: 61  SPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120
           SPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG
Sbjct: 61  SPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120

Query: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180
           IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG
Sbjct: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180

Query: 181 GSLV 185
           GSLV
Sbjct: 181 GSLV 184

[Close]

BLAST of CmaCh06G013690 vs. ExPASy TrEMBL
Match: A0A6J1FFS2 (early light-induced protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445323 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 6.7e-91
Identity = 181/184 (98.37%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MATSALLQAIPVSSASRTTFRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP 60
           MATSALLQAIP  SASRTT RTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP
Sbjct: 1   MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP 60

Query: 61  SPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120
           SPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG
Sbjct: 61  SPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120

Query: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180
           IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG
Sbjct: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180

Query: 181 GSLV 185
           GSLV
Sbjct: 181 GSLV 184

[Close]

BLAST of CmaCh06G013690 vs. ExPASy TrEMBL
Match: A0A5D3D3B2 (Early light-induced protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00800 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.9e-65
Identity = 143/192 (74.48%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 1   MATSALLQAIPVSSASRTTFRTPTN-------RLCSRRTASFRVRCTAEEEQREQAIPTP 60
           MA SA++Q+IP S+ASR  +RT TN       RLCSR T +FRVRCTAEE+QREQAIP+ 
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTAEEDQREQAIPSS 60

Query: 61  APPTSNPSPPPPSPKPKV-STKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDV 120
            PP+     P PS   KV STKF+D+LAFSGP PERINGRLAMIGFVAA+AVE  KGQDV
Sbjct: 61  IPPSPPKLEPAPSSTSKVTSTKFTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 121 LEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVAL 180
            EQI NGGIPWFVGTSVVLTLASLIPLFKGVS ES SKG+M+S+AELWNGRFAMLGLVAL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 181 AFTEFVKGGSLV 185
           AFTE+VKGGSLV
Sbjct: 181 AFTEYVKGGSLV 192

[Close]

BLAST of CmaCh06G013690 vs. ExPASy TrEMBL
Match: A0A1S3AXH6 (early light-induced protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483676 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.4e-64
Identity = 142/192 (73.96%), Postives = 158/192 (82.29%), Query Frame = 0


Query: 1   MATSALLQAIPVSSASRTTFRTPTN-------RLCSRRTASFRVRCTAEEEQREQAIPTP 60
           MA SA++Q+IP S+ASR  +RT TN       RLCSR T +FRVRCT EE+QREQAIP+ 
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTGEEDQREQAIPSS 60

Query: 61  APPTSNPSPPPPSPKPKV-STKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDV 120
            PP+     P PS   KV STKF+D+LAFSGP PERINGRLAMIGFVAA+AVE  KGQDV
Sbjct: 61  IPPSPPKLEPAPSSTSKVTSTKFTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 121 LEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVAL 180
            EQI NGGIPWFVGTSVVLTLASLIPLFKGVS ES SKG+M+S+AELWNGRFAMLGLVAL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 181 AFTEFVKGGSLV 185
           AFTE+VKGGSLV
Sbjct: 181 AFTEYVKGGSLV 192

[Close]

BLAST of CmaCh06G013690 vs. ExPASy TrEMBL
Match: A0A0A0LA49 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G145780 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.5e-63
Identity = 140/192 (72.92%), Postives = 158/192 (82.29%), Query Frame = 0


Query: 1   MATSALLQAIPVSSASRTTFRTPTNRL-------CSRRTASFRVRCTAEEEQREQAIPTP 60
           MA SA++Q+I  ++A+R  +RT TNRL       CSR TA+FRVRC AEE+QREQAIP+ 
Sbjct: 1   MAASAVMQSILSTTATRGVYRTTTNRLLPAALRPCSRSTAAFRVRCMAEEDQREQAIPSS 60

Query: 61  APPTSNPSPPPPSPKPKV-STKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDV 120
            PP+     P PSP  KV STK +D+LAFSGP PERINGRLAMIGFVAA+AVE  KGQDV
Sbjct: 61  IPPSPPKPEPSPSPPSKVTSTKLTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 121 LEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVAL 180
            EQI NGGIPWFVGTSVVLTLASLIPLFKGVS ES SKG+M+S+AELWNGRFAMLGLVAL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 181 AFTEFVKGGSLV 185
           AFTE+VKGGSLV
Sbjct: 181 AFTEYVKGGSLV 192

[Close]

BLAST of CmaCh06G013690 vs. NCBI nr
Match: XP_022974396.1 (early light-induced protein 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 349.0 bits (894), Expect = 2.5e-92
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MATSALLQAIPVSSASRTTFRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP 60
           MATSALLQAIPVSSASRTTFRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP
Sbjct: 1   MATSALLQAIPVSSASRTTFRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP 60

Query: 61  SPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120
           SPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG
Sbjct: 61  SPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120

Query: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180
           IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG
Sbjct: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180

Query: 181 GSLV 185
           GSLV
Sbjct: 181 GSLV 184

[Close]

BLAST of CmaCh06G013690 vs. NCBI nr
Match: XP_022939396.1 (early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >KAG6597416.1 Early light-induced protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028875.1 Early light-induced protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 343.2 bits (879), Expect = 1.4e-90
Identity = 181/184 (98.37%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MATSALLQAIPVSSASRTTFRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP 60
           MATSALLQAIP  SASRTT RTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP
Sbjct: 1   MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP 60

Query: 61  SPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120
           SPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG
Sbjct: 61  SPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120

Query: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180
           IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG
Sbjct: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180

Query: 181 GSLV 185
           GSLV
Sbjct: 181 GSLV 184

[Close]

BLAST of CmaCh06G013690 vs. NCBI nr
Match: XP_023539090.1 (early light-induced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.0 bits (837), Expect = 1.0e-85
Identity = 176/184 (95.65%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MATSALLQAIPVSSASRTTFRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP 60
           MATSALLQAIP  SASRTTFRTP   LCSRRTA FRVRCTAEEEQREQAI TPAPPT NP
Sbjct: 1   MATSALLQAIPARSASRTTFRTP---LCSRRTAFFRVRCTAEEEQREQAISTPAPPTPNP 60

Query: 61  SPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120
           SPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG
Sbjct: 61  SPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120

Query: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180
           IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG
Sbjct: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180

Query: 181 GSLV 185
           GSLV
Sbjct: 181 GSLV 181

[Close]

BLAST of CmaCh06G013690 vs. NCBI nr
Match: XP_038880321.1 (early light-induced protein 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 260.8 bits (665), Expect = 9.1e-66
Identity = 147/193 (76.17%), Postives = 160/193 (82.90%), Query Frame = 0


Query: 1   MATSALLQAIPVSSASRTTFRTPTNRLC-------SRRTASFRVRCTAEEEQREQAIPTP 60
           MA SA++Q+IP SSA+R   RT TNRL        SRR ASFRVRCTAEE+QREQ I T 
Sbjct: 1   MAASAVMQSIPASSANRGISRTSTNRLLPAAIRPYSRRMASFRVRCTAEEDQREQPISTS 60

Query: 61  APPTS-NPSP-PPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQD 120
            PP+S  P P P PSP PKVSTKF+D+LAFSGP PERINGRLAMIGFVAA+AVE  KGQD
Sbjct: 61  IPPSSLKPEPTPSPSPPPKVSTKFTDILAFSGPGPERINGRLAMIGFVAALAVETLKGQD 120

Query: 121 VLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVA 180
           V EQI NGGIPWFVGTSVVLTLASLIPLF+GVS ES SKG+M S+AELWNGRFAMLGLVA
Sbjct: 121 VFEQIANGGIPWFVGTSVVLTLASLIPLFRGVSAESNSKGIMNSNAELWNGRFAMLGLVA 180

Query: 181 LAFTEFVKGGSLV 185
           LAFTE+VKGGSLV
Sbjct: 181 LAFTEYVKGGSLV 193

[Close]

BLAST of CmaCh06G013690 vs. NCBI nr
Match: KAA0049329.1 (early light-induced protein 1 [Cucumis melo var. makuwa] >TYK17229.1 early light-induced protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 257.3 bits (656), Expect = 1.0e-64
Identity = 143/192 (74.48%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 1   MATSALLQAIPVSSASRTTFRTPTN-------RLCSRRTASFRVRCTAEEEQREQAIPTP 60
           MA SA++Q+IP S+ASR  +RT TN       RLCSR T +FRVRCTAEE+QREQAIP+ 
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTAEEDQREQAIPSS 60

Query: 61  APPTSNPSPPPPSPKPKV-STKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDV 120
            PP+     P PS   KV STKF+D+LAFSGP PERINGRLAMIGFVAA+AVE  KGQDV
Sbjct: 61  IPPSPPKLEPAPSSTSKVTSTKFTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 121 LEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVAL 180
            EQI NGGIPWFVGTSVVLTLASLIPLFKGVS ES SKG+M+S+AELWNGRFAMLGLVAL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 181 AFTEFVKGGSLV 185
           AFTE+VKGGSLV
Sbjct: 181 AFTEYVKGGSLV 192

[Close]

BLAST of CmaCh06G013690 vs. TAIR 10
Match: AT3G22840.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-53
Identity = 118/185 (63.78%), Postives = 139/185 (75.14%), Query Frame = 0


Query: 12  VSSASRTTFRTPTNRLCS-------RRTASFRVRCTAE-EEQREQAIPTPAPPTSNPSP- 71
           V +   TT +  TN+L S       +R     VRC AE     E + P P+   + P P 
Sbjct: 11  VFAGGLTTRKINTNKLFSAGSFPNLKRNYPVGVRCMAEGGPTNEDSSPAPSTSAAQPLPK 70

Query: 72  ---PPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNG 131
              PPP  KPKVSTKFSD+LAFSGPAPERINGRLAM+GFVAA+AVE  KG++VL QI +G
Sbjct: 71  SPSPPPPMKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKGENVLAQISDG 130

Query: 132 GIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVK 185
           G+ WF+GT+ +LTLASL+PLFKG+SVESKSKG+MTSDAELWNGRFAMLGLVALAFTEFVK
Sbjct: 131 GVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAMLGLVALAFTEFVK 190

[Close]

BLAST of CmaCh06G013690 vs. TAIR 10
Match: AT4G14690.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 196.4 bits (498), Expect = 2.0e-50
Identity = 111/193 (57.51%), Postives = 145/193 (75.13%), Query Frame = 0


Query: 1   MATSAL-LQAIPVSSASRTTFRT--PTNRLCSRRTASFRVRCTAEEE--QREQAIPTPA- 60
           MAT++  +Q++  + +   T R    TN+L  +R A   VRC A+ +  + + ++P+ + 
Sbjct: 1   MATASFNMQSVFAAPSGVLTTRNIRNTNQLFFKRIAPVGVRCMAQGDPIKEDPSVPSTST 60

Query: 61  ---PPTSNPSPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQD 120
              PP    SPPPP  KPKVSTKF D+LAFSGPAPERINGRLAM+GFVAA+A+E  KG++
Sbjct: 61  SATPPQMPQSPPPPVSKPKVSTKFGDLLAFSGPAPERINGRLAMVGFVAAIAMELSKGEN 120

Query: 121 VLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVA 180
           V  QI +GG+ WF+GT+ +LTLAS++PLFKG+  E+KSKG MTSDAELWNGRFAMLGLVA
Sbjct: 121 VFAQISDGGVGWFLGTTALLTLASMVPLFKGIRAEAKSKGFMTSDAELWNGRFAMLGLVA 180

Query: 181 LAFTEFVKGGSLV 185
           LAFTE+V GG+LV
Sbjct: 181 LAFTEYVTGGTLV 193

The following BLAST results are available for this feature:

BLAST of CmaCh06G013690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93735	2.7e-52	63.78	Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q94K66	2.8e-49	57.51	Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
P11432	9.8e-47	57.87	Early light-induced protein, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
Q01931	3.0e-35	53.21	Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum O...	[more]
P14895	5.6e-34	54.97	High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum...	[more]

BLAST of CmaCh06G013690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IB88	1.2e-92	100.00	early light-induced protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1FFS2	6.7e-91	98.37	early light-induced protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A5D3D3B2	4.9e-65	74.48	Early light-induced protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3AXH6	1.4e-64	73.96	early light-induced protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A0A0LA49	3.5e-63	72.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G145780 PE=4 SV=1	[more]

BLAST of CmaCh06G013690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974396.1	2.5e-92	100.00	early light-induced protein 1, chloroplastic-like [Cucurbita maxima]	[more]
XP_022939396.1	1.4e-90	98.37	early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >KAG65974...	[more]
XP_023539090.1	1.0e-85	95.65	early light-induced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_038880321.1	9.1e-66	76.17	early light-induced protein 1, chloroplastic [Benincasa hispida]	[more]
KAA0049329.1	1.0e-64	74.48	early light-induced protein 1 [Cucumis melo var. makuwa] >TYK17229.1 early light...	[more]

BLAST of CmaCh06G013690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22840.1	1.9e-53	63.78	Chlorophyll A-B binding family protein	[more]
AT4G14690.1	2.0e-50	57.51	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 84..127 e-value: 3.3E-5 score: 24.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..70
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 1..174
None	No IPR available	PANTHER	PTHR14154:SF5	EARLY LIGHT-INDUCED PROTEIN 1, CHLOROPLASTIC	coord: 1..174
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 61..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G013690.1	CmaCh06G013690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane