CmaCh06G012800 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G012800
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	7-hydroxymethyl chlorophyll a reductase, chloroplastic
Location	Cma_Chr06: 8503258 .. 8507851 (+)
RNA-Seq Expression	CmaCh06G012800
Synteny	CmaCh06G012800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGTGTTTCAGAGTAAGAGTTCGTTTGATAGTTATGGAACAGATGGCGAATCGGAACCGAAGCAAGTAAAACTCAGGGAACTCTCCAGACCGATTCCTCCTGGAGGCATCTATCCTGCCAAAGAACATTGTAGGTTCAATCTAAGCTTCGTTGTTTGTGAAGATTACGATATGAGTTTGGAGGGAAGAGGCGGTTCTTTGCATTTTATGGCTTTGATTCTTGTTCATTTTTGTTTGTTAAGGTTATTGGTAAGGGACTAGGTTTACGCAAACCAATTTCCTGCTAATTTAGAATATGTCTGAGAAAGATAATCATCCCAAATTCGACATAAATCAAAGTAGGAAGAAACATCAAAGGCCTCTCCATGATGAGCTTGTAATCCTGCAAAAGCAAACTGAACAAACCAATGGATGAACCGAGATAGAACCAACTAACAAACCACAAAAGCTATTCATTCTTATTTCTTCACAATCTTCATTTGAATATGGTGCGGGATTTTTGTATGTAATTGTCTCTAAAACAGTCATTTGTTTGTCATTGTTTCATTTCATTACTCTGTTCTTAGTTGATCTTGTTGCATACATTTGTTATTAGTAGCTTTCTCTTGTATAAGAGTACCTTGTATTTGATTCATATATACAAAGGAAATATGATATTCTTTTCCTCATAAAAATCATTTAACAACATTGAAATTGGTCTCTCAAAACTATTGCCAGCAGTTAACTTGGGCCATCCAAGAATGTATGCCGAACAGTCCGAGATTCACAACTAAGTCGATAGCTTAAGGCAAAGGGTGGGTGCACTCTTGGCCACAAATTAGTCTGGCATGGTTCCACTGTATCCAACAAGGCCTAGAAAGAGTTACTAAATCATCCTTTCCGTTTTCCATACCCTCCTTCGTCCGTTAGGTTTACGAAATCATGCTTTCAGACACATCATTAATGATTAACTTGTTCTTTTCATGTGTACCTATAAAGCTGCCCAGGCACAAGCAGAGTACTGTTTCACTTGTGTTTTTCTTACTCTCAGGGAAAGGTCCTTCACGGCCTGCTCCAAAATTAATTGGGACATCATAGCATTTTGTCTGAACTTGGTAAAATTTCCCCTTCATCTATGATACACTTGCATTACAGTATATGCAGAAACTTCATTATCTTGTTTTTAGATTGGCCTGAATGTCTGGACTTTGCTCGATATTCACAGGATTAATCTGTCTATGAAGGATCCTTTTCGTTTCTGTTTCCTTTTCCTATTTTTGACAATGAATTATCGACTGCAGAGCCAATAAGCATGAGCCTACATATGCTAAAAAGATGGTGGATTTGTACAACCAGAATGGTGAAATTGATCGTATGCTTTACAGAGATAGATGACATTTTCACTTGTATTACTGGCTCTTTTGATTTTGGAGCCATGAAATAATGTCACCGGACTTCAAGATTCTTGCTGTGAGCTTTGGTTCCACTACTTTTTTCTTGTTTCATGCCCTGAATCATCCACCTTTTTCTATGGGCTATTTGGGCTGTTTATTGAATCCTTTCAACATGTAAGAGACTTAAAAGTTTGTCTCGACATATTTGTAGTTACAAGTAGTGTTTTTATAGGATCAGACGACAAAATGTAGTAAAGAGCATTTGCTCAATTTACTTCAGCGTTTTGGAAGAGTGCAGGACTTTCTTTTCAAAGATTGTTTTTTTTGTAAGATAGGCATTGTGAGATACCACATCAGATGAAGAGGAGAATGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAAACCTCGAGGGGAAGCCCTAAAGGGAAAGCCCAAAGAGAACAATATCTACTAGCAGTGGGCTTGGGCTGTGTTACAAGCATGCCCTTCTTCCTGAATCTAGCTTGAACAAATGCACATCTCAAATGGCTTGACAAGTCCAAACAATACCCATCATAATAAACAAGAAATAAAGTAAAAGATTAGGAGTTGAATGAAAATTTCAAGGGGTTTAAAGGAGAAAACATGGGAGGGAAATAATCTCTAATAATGTAATATTTGGTATTGTTCATAAATGTCAAATCAGAACAAAAAAGAAACTTAATAAAGTAGATGAAGCCTTAATAAAAGGTGTATGAAGGATATACCATGGTTTCTAAACCAGTGAGTATTTCCTCAGACTCCTGAACTTTGTGCTGGGTAATGGTAAAATTGTCACTTACCATCATTATCCCAACTGAGTTATTTATCATTTATTACAGGAAGGGATGGGCTTTTGATGAAGAACTAGGAAAATGTTATGGGTAGTTACTACCCCATGTGTTTTCTTCTCTATGGTAGCTTGATGTCTCTGTAAGAGGTTGCATGGTTTTATGAGAACATTGGAAGCTCTAGTGGGATTTTGACAAAGACTGCAGGTTGGACTTCATGTTGTTTGGCTTTATGTATTGCAATAAACTAGAACATTAATGTCTACTTGACTGAAATATATAATCAAACGGATGCAGATAACATGTTCATGAAGGATCATGATCAGTTCGAATTACAAATTGGTTCCTGAAAAGCTTTGAGTTTGTGGTGCTGAAGAACATTTAAATGGGCCATGGAGTTATATCACTATGTTTGGTTGAATCAACAGCATGGGAAGTCATATGGGTTGTCTTCTCCTTTAACGTTCCCCACTCGAGAATTGTCGCGTCTTTGTTCTTAAGTCTTGAAACTGTTCTGACTCATTGAGCTCTCTAGCGCACACAAAACATCTTATTTGCAATGTAGAACCTTATGTTCAAGAAATGTGAGTCTTTTGTTATGGTTCATTTCATTGGCTGTGAATTCTGATTTGTGGCTTGTTTTTTGTGTCAGTTGAGAAAGATGCATATGGACTATGGGTTTCAAGCAGAGTAAAAAAGAGGGAGCATTGCATTTATCAGGTACTGATTGGTTTGAAGGCTTAGACTTTTATTTGTGAGATCCCACATTAGTTGTAGAGGGGAACGAAGCATTACATATAAGAGTGTGGAAGTCTTTCCCTAGTAAACGTGTTTTAAAACCTTGAGGGGAAGCCCAAAGAGGACAATATTGCTAGTGTGGACTTGGGCTGTTACAAATGATATCAGAGCCAAGCATCGGGTGGTGTGCCAGCGAGGACGTTGGGGGGTGGATTGTGAGATCCCACATCGTTGGAGAGGAGAATGAAACATTTCTTATAAGGGTGTGGAAACCTCTTTCTAGCAGACGCTTTTTAAAACCTTAAAGGGAAGCCAAGAAGGGAAAATCCAAAGAGGACAATCTGTTAGTAGTAGGCTTGGGCGGTTACATTATTACCGTTGAAAATTTGGAGTGGTTAGAGAGATTTGTTCACATGTAGAAACTAAGAACTAAGATAAGGTTTACACTTCTCTGCTCAGACCATGTGCAAAGCAACATGGAGACAGAAAACCCTGAAACCCATTTTTTCATTGTGAGACCAAAACTGAGATCCCTTAGTGGAGATTTGTTATGTTGGGGGGAATCATGGACCTGAGGGGCCACATTTTTGTAAACGGACCCATTGTGGATCCACTGTGGAGCCCATTAAATGCTATTTATTATCATTTCCTAGGTGGGTCAGGTTGTGTTGGATTTACAACAGAGAGGAAAGAAAGTTTACAATTACAACAAGGTAGATCCAGAAGGAGATAGTCAATAGGACAGAAAGAAGAAAAAACAATAAGCCTCATCTTCCTCTATACAGAAAGGAATTCGTAGGGGGAGGAGGGCTCTGCTAATGTGTTTCTTTTGTTTTTTTTTTTGTTTTGTTGGTTTACTGTTCTTCACAAGATGAACCCAACACTTTTATTAGAAATGTGAAATGCATCTTCTATGGCGAGCTGCCACAGATTTTCTCTTCTGTTTTGTTTCTTCTTTCCAACTCTTGGCAATGTCCTGAGCTACATTAATGGCGTCCAATGAAGCTCCTGATAGGCCTCTTCTTGTGAACCCAACCGCGTAGAGTCCTGCTTTGCCTTTCCACCCATTTGGGAATGGACTTTTTGGAATCCCATCACTGGAAAAGAACTCATTTTCCTGTGCAATAAAATACTCTAGGTTTAGGGTAAGGAACTAAACAGAATAGATCTCAAGTTGGGCACATATTTGGAAGAACTGAAGGGTAATGGTCCATAAAAGAGACTTAAAAAACTGAACCCAACTTCCATAACTGTCACATGGACTCTAAAAGGAGAGCCCATTTCAAATATTATTAAAAAACTTGCTGACCTTGAGCCAAGATGGAACATTGCTGCGATAGCCAGTAGCTAGAATTACAGAATCAATCTCTAGAACTTCTCCATTGACCAGCTCCACCGCACCTTGTCGGAATTTTTTAATTCCGGTCACCACCTTGATCTCGCCTGCTCTTATCTTCTGTAGCGCTCCAATATCTAACACCGGTGTCTTCCCAGCAGCGTTTTTCAGCTGCAAAGGCCCTGTAGATGGCCTTTTAAGTCCATACTTCTCAGTGTTCCCAAGAACAAGTCTGGCAATGATCAGGAGCATCTTGTCGACCATATGAAGTGGCAGCCATTTCATCAGGGAAATTGCAACTTCAAAAGTTGA

mRNA sequence

ATGATTGTGTTTCAGAGTAAGAGTTCGTTTGATAGTTATGGAACAGATGGCGAATCGGAACCGAAGCAAGTAAAACTCAGGGAACTCTCCAGACCGATTCCTCCTGGAGGCATCTATCCTGCCAAAGAACATTGTAGGTTCAATCTAAGCTTCGTTGTTTGTGAAGATTACGATATGAGTTTGGAGGGAAGAGGCGTTGAGAAAGATGCATATGGACTATGGGTTTCAAGCAGAGTGGGTCAGGTTGTGTTGGATTTACAACAGAGAGGAAAGAAAGTTTACAATTACAACAAGCTGCAAAGGCCCTGTAGATGGCCTTTTAAGTCCATACTTCTCAGTGTTCCCAAGAACAAGTCTGGCAATGATCAGGAGCATCTTGTCGACCATATGAAGTGGCAGCCATTTCATCAGGGAAATTGCAACTTCAAAAGTTGA

Coding sequence (CDS)

ATGATTGTGTTTCAGAGTAAGAGTTCGTTTGATAGTTATGGAACAGATGGCGAATCGGAACCGAAGCAAGTAAAACTCAGGGAACTCTCCAGACCGATTCCTCCTGGAGGCATCTATCCTGCCAAAGAACATTGTAGGTTCAATCTAAGCTTCGTTGTTTGTGAAGATTACGATATGAGTTTGGAGGGAAGAGGCGTTGAGAAAGATGCATATGGACTATGGGTTTCAAGCAGAGTGGGTCAGGTTGTGTTGGATTTACAACAGAGAGGAAAGAAAGTTTACAATTACAACAAGCTGCAAAGGCCCTGTAGATGGCCTTTTAAGTCCATACTTCTCAGTGTTCCCAAGAACAAGTCTGGCAATGATCAGGAGCATCTTGTCGACCATATGAAGTGGCAGCCATTTCATCAGGGAAATTGCAACTTCAAAAGTTGA

Protein sequence

MIVFQSKSSFDSYGTDGESEPKQVKLRELSRPIPPGGIYPAKEHCRFNLSFVVCEDYDMSLEGRGVEKDAYGLWVSSRVGQVVLDLQQRGKKVYNYNKLQRPCRWPFKSILLSVPKNKSGNDQEHLVDHMKWQPFHQGNCNFKS

Homology

[Close]

BLAST of CmaCh06G012800 vs. ExPASy Swiss-Prot
Match: Q8GS60 (7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HCAR PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.6e-04
Identity = 27/48 (56.25%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 3  VFQSKSSFDSYGTDGESEP-KQVKL----RELSRPIPPGGIYPAKEHC 46
          VF   +S  S   D   EP K+VKL    RE SRPIPPGG YPAK+HC
Sbjct: 15 VFSVVNSSSSRSKDMNLEPKKKVKLREDWREKSRPIPPGGTYPAKDHC 62

[Close]

BLAST of CmaCh06G012800 vs. TAIR 10
Match: AT1G04620.1 (coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family )

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-05
Identity = 27/48 (56.25%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 3  VFQSKSSFDSYGTDGESEP-KQVKL----RELSRPIPPGGIYPAKEHC 46
          VF   +S  S   D   EP K+VKL    RE SRPIPPGG YPAK+HC
Sbjct: 15 VFSVVNSSSSRSKDMNLEPKKKVKLREDWREKSRPIPPGGTYPAKDHC 62

The following BLAST results are available for this feature:

BLAST of CmaCh06G012800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GS60	1.6e-04	56.25	7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of CmaCh06G012800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04620.1	1.2e-05	56.25	coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G012800.1	CmaCh06G012800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016491	oxidoreductase activity