CmaCh06G012790 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G012790
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA-directed RNA polymerase
Location	Cma_Chr06: 8501433 .. 8503389 (-)
RNA-Seq Expression	CmaCh06G012790
Synteny	CmaCh06G012790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTTGGCAGGATAGATGCCTCCAGGAGGAATCGGTCTGGAGAGTTCCCTGAGTTTTACTTGCTTCGGTTCCGATTCGCCATCTGTTCCATAACTATCAAACGAACTCTTACTCTGAAACACAATCATATATCCATATGCGGCGGAATCGCAAGAACGACAGAGAGATGTATGAACTTACTTGGAGAAGAAGACAAGGATGAACAAACGATGGAAAGTGAGAGGAACAAACGTATATTCATTCTGCTGGATAAATGGCGAACGATCAGTGTATAGAAATTCGAAAACCCACCCATAAATGAATTTGGATTCATAGGTCTCGAAGATTTAGCTTGGTTTTTTTGAACTCTTCAACAAAATTTTCATCTCAATCGGGCTGTTTATGGTTCAATATTGGGTTTTTTTTTTTTGTGCTTAAGCTTATGATTTCTTACAATCCCTATAGATCATTTCGCCCGTTATTTAAGATTAAGTTCATCGACTAGGGGTGGAAAAGTATGATTTTTTGGTGTATTTTTCGGATTTTTTGATCGAGTCTTATTGATGAATCTCGTTCAAACTCGAGAGCAGGTCGAGATATCTTGTTGCATTGGCCTAACGAGCCTTTTCCCAACGCAAGCTTTAACATATTGAAATATGTTGGACAAAAAAGTCAACAAAATATGCACGGGGAGATCTAAGTTGTCTCGATACAAGCCATCGTGTTGGTATTTTTCATCACAAATAGCTTCCTCGACGAGTCTATGTGGATGTTTTTAAGATCTTTTGTGGTCAGCTTCCAAAAAAACCTAAAAAAATTGTAACGTAAAAAATAAGTAATGCCTAAACTTTTATTTATTTATAACTTTTCCAATTTAGTCCATTTTGTAGTAAAATTTATATCAAATTTTAATTTTTATTATTTTATTTATGTCATTAATTATAAAGTATAGAGATTATATTGTTACATACTAAATTTAAAATTAGGAACAAAATTGTTATTTTCATGAAAATTCACTTACTAATTCTAATAAAATTAATGCAAAATGGAAATTAAAAGTTTACTTAAATTTTAAAATAAAAATTATTGGTTTAATATTATTTTTTAAGATGGAAAGAGTTAAATAAAAGGCAACTAGTTTGGTGGCAGAAGCAGTTCCTCACGGCGGCGCCGTAAATGTAGCACCATTTTTTGGTGGTCGGGAATGTGATCTCTGATGACGGCGGCGGTTCGGAAACTCTCCGCCCATGCTTGAAGGCGAGGGAACTCAGGGCCTTCAATCAGCTTCATATCCAATACTTCTTCCAAAACCTTCATCCACACTGCGATCCATCCGTACGTCAAATCCACCATATTAATCGCATCTCCTCCGAAGAACTTCCCGCCGCCGCCGAGGCCCCTCTCCTCGACCGTCCTCAGCACTTCCAAGCTCGCTCTCCTCGCCTCCTCTTTATCTTCCCCTCTCGCTACAAAAATCCTCCTCATCGTTGCTTCCTGTTCCATATTTTCTTGTTTGGTTCAGGTAATTTAAGTATTTATTTCGATTTGGTAAATCTAAGGTCAATTGAATGAGTTTTTTCTTCAAACTGCCTTTAAGAAACATTTATAACATCATTATTGACGAGTTCTCTGCGGAATGATTACCTTGTCCTCTATGAATTTGATCCAGAACCGAGCGGTGGCTCTGTCGAGAGGATCGATCGGTAGCAGAGGCTTTTGCGGCCAGGTCTCGTCGATGTACTCAAGGATGATGGAGGATTCGCAGATCGGCTTTTCGCCATGGACGAGCACCGGAATCTTCTTGCAAACGGGATTGTAGTGAAGGAGCAGAGGGCTTTTCTTCGTCATATCTTCTTGTACGAACTCGTAGGGTATGCCTTTGAGTTCCAGCGCCCAGACGACTCTGTTACTGAAAGGACTCGCCCAACTTCCATGGAGCTTCACTCCTCCCATCCTTCAATGGCGAAAATCTGA

mRNA sequence

ATGTTCTTTGGCAGGATAGATGCCTCCAGGAGGAATCGGTCTGGAGAGTTCCCTGAGTTTTACTTGCTTCGGTTCCGATTCGCCATCTGTTCCATAACTATCAAACGAACTCTTACTCTGAAACACAATCATATATCCATATGCGGCGGAATCGCAAGAACGACAGAGAGATGTATGAACTTACTTGGAGAAGAAGACAAGGATGAACAAACGATGGAAAGTGAGAGGAACAAACAGTTAAATAAAAGGCAACTAGTTTGGTGGCAGAAGCAGTTCCTCACGGCGGCGCCGCGAGGGAACTCAGGGCCTTCAATCAGCTTCATATCCAATACTTCTTCCAAAACCTTCATCCACACTGCGATCCATCCGTACGTCAAATCCACCATATTAATCGCATCTCCTCCGAAGAACTTCCCGCCGCCGCCGAGGCCCCTCTCCTCGACCGTCCTCAGCACTTCCAAGCTCGCTCTCCTCGCCTCCTCTTTATCTTCCCCTCTCGCTACAAAAATCCTCCTCATCGTTGCTTCCTGTTCCATATTTTCTTGTTTGGTTCAGAGGCTTTTGCGGCCAGGTCTCGTCGATGTACTCAAGGATGATGGAGGATTCGCAGATCGGCTTTTCGCCATGGACGAGCACCGGAATCTTCTTGCAAACGGGATTGTAGTGAAGGAGCAGAGGGCTTTTCTTCGTCATATCTTCTTGTACGAACTCGTAGGGTATGCCTTTGAGTTCCAGCGCCCAGACGACTCTGTTACTGAAAGGACTCGCCCAACTTCCATGGAGCTTCACTCCTCCCATCCTTCAATGGCGAAAATCTGA

Coding sequence (CDS)

ATGTTCTTTGGCAGGATAGATGCCTCCAGGAGGAATCGGTCTGGAGAGTTCCCTGAGTTTTACTTGCTTCGGTTCCGATTCGCCATCTGTTCCATAACTATCAAACGAACTCTTACTCTGAAACACAATCATATATCCATATGCGGCGGAATCGCAAGAACGACAGAGAGATGTATGAACTTACTTGGAGAAGAAGACAAGGATGAACAAACGATGGAAAGTGAGAGGAACAAACAGTTAAATAAAAGGCAACTAGTTTGGTGGCAGAAGCAGTTCCTCACGGCGGCGCCGCGAGGGAACTCAGGGCCTTCAATCAGCTTCATATCCAATACTTCTTCCAAAACCTTCATCCACACTGCGATCCATCCGTACGTCAAATCCACCATATTAATCGCATCTCCTCCGAAGAACTTCCCGCCGCCGCCGAGGCCCCTCTCCTCGACCGTCCTCAGCACTTCCAAGCTCGCTCTCCTCGCCTCCTCTTTATCTTCCCCTCTCGCTACAAAAATCCTCCTCATCGTTGCTTCCTGTTCCATATTTTCTTGTTTGGTTCAGAGGCTTTTGCGGCCAGGTCTCGTCGATGTACTCAAGGATGATGGAGGATTCGCAGATCGGCTTTTCGCCATGGACGAGCACCGGAATCTTCTTGCAAACGGGATTGTAGTGAAGGAGCAGAGGGCTTTTCTTCGTCATATCTTCTTGTACGAACTCGTAGGGTATGCCTTTGAGTTCCAGCGCCCAGACGACTCTGTTACTGAAAGGACTCGCCCAACTTCCATGGAGCTTCACTCCTCCCATCCTTCAATGGCGAAAATCTGA

Protein sequence

MFFGRIDASRRNRSGEFPEFYLLRFRFAICSITIKRTLTLKHNHISICGGIARTTERCMNLLGEEDKDEQTMESERNKQLNKRQLVWWQKQFLTAAPRGNSGPSISFISNTSSKTFIHTAIHPYVKSTILIASPPKNFPPPPRPLSSTVLSTSKLALLASSLSSPLATKILLIVASCSIFSCLVQRLLRPGLVDVLKDDGGFADRLFAMDEHRNLLANGIVVKEQRAFLRHIFLYELVGYAFEFQRPDDSVTERTRPTSMELHSSHPSMAKI

Homology

The following BLAST results are available for this feature:

BLAST of CmaCh06G012790 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G012790 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 251..272

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G012790.1	CmaCh06G012790.1	mRNA