CmaCh06G011680 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G011680
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic
Location	Cma_Chr06: 7855927 .. 7857688 (-)
RNA-Seq Expression	CmaCh06G011680
Synteny	CmaCh06G011680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACGTATGCTTGCGTATTCGTCCATCGGTCAAATCGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGCTGTTCTATATCGCCATGAATCTAGGAACTTTTGCTCGCATTGTATCATTTGGTCTACGTACCGGAACTGATAACATTCGAGATTATGCAGGATTATACACAAAAGATCCTCTTTTGGCTCTCTCTTTAGCCCTATGTCTCTTATCCTTAGGAGGTCTTCCTCCACTAGCAGGTTTTTTCGGAAAACTTCATTTATTCTGGTGTGGATGGCAGGCAGGCCTATATTTCTTGGTTTCAATAGGACTCCTTACGAGCGTTGTTTCTATCTACTATTATCTCAAAATAATCAAGTTATTAATGACTGGACGAAACCAAGAAATAACCCCTCACGTGCGAAATTATAGAAGATCTCCTTTAAGATCAAACAATTCCATCGAATTGAGTATGATTGTATGTGTGATAGCATCTACTATACCAGGAATATCAATGAACCCGATTATTGAAATTGCTCAGGATACCCTTTTTTAGTTTAGCTTCTAGAATCTATTTCTTAGTTCAAGATCCCTCTTACTAACTGGAATCAAAGAATTAGTAGATCTGTTCCGCCCAAAATGGGAATGGGCTAGGGTTATGAACTTATAATCTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATTCCATACCGGGCCAGACCGGAATAGGGCTAGGTTATATACATTCTAATTATGAGAAGGGGTCATCCGAGCGTATTTAAATAGATACTATGTTTACATATGGATCCCTACGTCCTTACATTCCATTTAGGATTAGGAATAGGCAGGCGTACGGACCTGTTTTTTACATATCTCTCGTTATTTGGGACCCTATTCATCTCTTTGGGCTTCTATTGAATCGAGAAATAGGTTTGATTGTCCATCTTTTTGATATAATAGTAAGGCATCCTCCGGATAATTCAAATCGAAGCAATTGGATGTCCGACTCGGACCTATATGACATGACCGAGCAATAGAAATACTCTAACACTCCACCGTTGTCATATATTCCATACATCACACTAGATAGATATCATATTCATGGAATATGATTCACTTTCAAGATGCCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAGAGCGTGGAGGTTCGAGTCCTCTTCAAGGCATAATGTTGAGAATGCCCGTTGAATTGGAAGGAATAAGTTCGGCAGCGGATCACGAAATCTTGGCGATCTTCTCTATCTAATGAATGGGAGTCCGCTTTGAAATCGTCCGCCCTGCACCCCCCCCCGAGTATATGCTTCAACAGGAATTAAACAAGGGTAGATTGATACAATAGAAACCTCTGGTAAAATGCCCACCCGTAACCCAGCAGATAAAGTACATTACATAGTCCGTTTTAGGGATTGGCGACTTACCCATTCAGTGACTTTGGCACTGGACGTTCCAAAAATGGGGTACTATCGGGTCGGGTGAATTCAATAATAGACGCCTGTTGGCATTCCAGCCTTCCTTCTCCTTTCAGGGCCTACCCGAAAGAGAATCCAGTGTTTCTTGGTCGTGAATATCTGAATAGGACGAACCGCCCCGTGGTTTGCTTCGGAACAAAACAATTAGAATTAGGCTCGTTGAACTGGAATGTGTATTATCCATATAGGGGATCTTTCAATGGAGAAGATCCGTCGACCTAA

mRNA sequence

ATGAAACGTATGCTTGCGTATTCGTCCATCGGTCAAATCGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGCTGTTCTATATCGCCATGAATCTAGGAACTTTTGCTCGCATTGTATCATTTGGTCTACGTACCGGAACTGATAACATTCGAGATTATGCAGGATTATACACAAAAGATCCTCTTTTGGCTCTCTCTTTAGCCCTATGTCTCTTATCCTTAGGAGGTCTTCCTCCACTAGCAGCAGATAAAGTACATTACATAGTCCGTTTTAGGGATTGGCGACTTACCCATTCAGTGACTTTGGCACTGGACGTTCCAAAAATGGGGGCCTACCCGAAAGAGAATCCAGTGTTTCTTGGTCGTGAATATCTGAATAGGACGAACCGCCCCGTGGTTTGCTTCGGAACAAAACAATTAGAATTAGGCTCGTTGAACTGGAATGTGTATTATCCATATAGGGGATCTTTCAATGGAGAAGATCCGTCGACCTAA

Coding sequence (CDS)

ATGAAACGTATGCTTGCGTATTCGTCCATCGGTCAAATCGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGCTGTTCTATATCGCCATGAATCTAGGAACTTTTGCTCGCATTGTATCATTTGGTCTACGTACCGGAACTGATAACATTCGAGATTATGCAGGATTATACACAAAAGATCCTCTTTTGGCTCTCTCTTTAGCCCTATGTCTCTTATCCTTAGGAGGTCTTCCTCCACTAGCAGCAGATAAAGTACATTACATAGTCCGTTTTAGGGATTGGCGACTTACCCATTCAGTGACTTTGGCACTGGACGTTCCAAAAATGGGGGCCTACCCGAAAGAGAATCCAGTGTTTCTTGGTCGTGAATATCTGAATAGGACGAACCGCCCCGTGGTTTGCTTCGGAACAAAACAATTAGAATTAGGCTCGTTGAACTGGAATGTGTATTATCCATATAGGGGATCTTTCAATGGAGAAGATCCGTCGACCTAA

Protein sequence

MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFARIVSFGLRTGTDNIRDYAGLYTKDPLLALSLALCLLSLGGLPPLAADKVHYIVRFRDWRLTHSVTLALDVPKMGAYPKENPVFLGREYLNRTNRPVVCFGTKQLELGSLNWNVYYPYRGSFNGEDPST

Homology

[Close]

BLAST of CmaCh06G011680 vs. ExPASy Swiss-Prot
Match: P0CC50 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.7e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFARIVSFGLRTGTD 60
           MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFARIVSFGLRTGTD
Sbjct: 320 MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFARIVSFGLRTGTD 379

Query: 61  NIRDYAGLYTKDPLLALSLALCLLSLGGLPPLA 94
           NIRDYAGLYTKDPLLALSLALCLLSLGGLPPLA
Sbjct: 380 NIRDYAGLYTKDPLLALSLALCLLSLGGLPPLA 412

[Close]

BLAST of CmaCh06G011680 vs. ExPASy Swiss-Prot
Match: P0CC51 (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.7e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFARIVSFGLRTGTD 60
           MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFARIVSFGLRTGTD
Sbjct: 320 MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFARIVSFGLRTGTD 379

Query: 61  NIRDYAGLYTKDPLLALSLALCLLSLGGLPPLA 94
           NIRDYAGLYTKDPLLALSLALCLLSLGGLPPLA
Sbjct: 380 NIRDYAGLYTKDPLLALSLALCLLSLGGLPPLA 412

[Close]

BLAST of CmaCh06G011680 vs. ExPASy Swiss-Prot
Match: P0CC36 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Buxus microphylla OX=153571 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.8e-43
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1   MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFARIVSFGLRTGTD 60
           MKRMLAYSSIGQIGYVIIGIIVGDSN GYASMITYMLFYI+MNLGTFARIVSFGLRTGTD
Sbjct: 320 MKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFARIVSFGLRTGTD 379

Query: 61  NIRDYAGLYTKDPLLALSLALCLLSLGGLPPLA 94
           NIRDYAGLYTKDP LALSLALCLLSLGGLPPLA
Sbjct: 380 NIRDYAGLYTKDPFLALSLALCLLSLGGLPPLA 412

[Close]

BLAST of CmaCh06G011680 vs. ExPASy Swiss-Prot
Match: P0CC37 (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Buxus microphylla OX=153571 GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.8e-43
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1   MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFARIVSFGLRTGTD 60
           MKRMLAYSSIGQIGYVIIGIIVGDSN GYASMITYMLFYI+MNLGTFARIVSFGLRTGTD
Sbjct: 320 MKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFARIVSFGLRTGTD 379

Query: 61  NIRDYAGLYTKDPLLALSLALCLLSLGGLPPLA 94
           NIRDYAGLYTKDP LALSLALCLLSLGGLPPLA
Sbjct: 380 NIRDYAGLYTKDPFLALSLALCLLSLGGLPPLA 412

[Close]

BLAST of CmaCh06G011680 vs. ExPASy Swiss-Prot
Match: Q67IB2 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Muilla maritima OX=51461 GN=ndhB PE=3 SV=2)

HSP 1 Score: 176.4 bits (446), Expect = 2.8e-43
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1   MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFARIVSFGLRTGTD 60
           MKRMLAYSSIGQIGYVIIGIIVGDSN GYASMITYMLFYI+MNLGTFARIVSFGLRTGTD
Sbjct: 320 MKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFARIVSFGLRTGTD 379

Query: 61  NIRDYAGLYTKDPLLALSLALCLLSLGGLPPLA 94
           NIRDYAGLYTKDP LALSLALCLLSLGGLPPLA
Sbjct: 380 NIRDYAGLYTKDPFLALSLALCLLSLGGLPPLA 412

[Close]

BLAST of CmaCh06G011680 vs. TAIR 10
Match: ATCG00890.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 174.5 bits (441), Expect = 7.6e-44
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFARIVSFGLRTGTD 60
           MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFA I+ FGLRTGTD
Sbjct: 197 MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFACIILFGLRTGTD 256

Query: 61  NIRDYAGLYTKDPLLALSLALCLLSLGGLPPLA 94
           NIRDYAGLYTKDP LALSLALCLLSLGGLPPLA
Sbjct: 257 NIRDYAGLYTKDPFLALSLALCLLSLGGLPPLA 289

[Close]

BLAST of CmaCh06G011680 vs. TAIR 10
Match: ATCG01250.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 174.5 bits (441), Expect = 7.6e-44
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFARIVSFGLRTGTD 60
           MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFA I+ FGLRTGTD
Sbjct: 197 MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFACIILFGLRTGTD 256

Query: 61  NIRDYAGLYTKDPLLALSLALCLLSLGGLPPLA 94
           NIRDYAGLYTKDP LALSLALCLLSLGGLPPLA
Sbjct: 257 NIRDYAGLYTKDPFLALSLALCLLSLGGLPPLA 289

[Close]

BLAST of CmaCh06G011680 vs. TAIR 10
Match: AT2G07689.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-06
Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 1   MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFARIVSFGLRTGTD 60
           +KR LA+SSIG +GY+  G   G    G  S++  +  Y  M +  FA IVS   +T   
Sbjct: 68  VKRPLAHSSIGHVGYIRTGFSCGTIE-GIQSLLIGIFIYALMTMDAFA-IVSALRQTRVK 127

Query: 61  NIRDYAGLYTKDPLLALSLALCLLSLGGLPPLA 94
            I D   L   +P+ A++ ++ + S  G+PPLA
Sbjct: 128 YIADLGALAKTNPISAITFSITMFSYAGIPPLA 158

[Close]

BLAST of CmaCh06G011680 vs. TAIR 10
Match: ATMG00285.1 (NADH dehydrogenase 2A )

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-06
Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 1   MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFARIVSFGLRTGTD 60
           +KR LA+SSIG +GY+  G   G    G  S++  +  Y  M +  FA IVS   +T   
Sbjct: 315 VKRPLAHSSIGHVGYIRTGFSCGTIE-GIQSLLIGIFIYALMTMDAFA-IVSALRQTRVK 374

Query: 61  NIRDYAGLYTKDPLLALSLALCLLSLGGLPPLA 94
            I D   L   +P+ A++ ++ + S  G+PPLA
Sbjct: 375 YIADLGALAKTNPISAITFSITMFSYAGIPPLA 405

[Close]

BLAST of CmaCh06G011680 vs. TAIR 10
Match: ATMG01320.1 (NADH dehydrogenase 2B )

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-06
Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 1   MKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFARIVSFGLRTGTD 60
           +KR LA+SSIG +GY+  G   G    G  S++  +  Y  M +  FA IVS   +T   
Sbjct: 315 VKRPLAHSSIGHVGYIRTGFSCGTIE-GIQSLLIGIFIYALMTMDAFA-IVSALRQTRVK 374

Query: 61  NIRDYAGLYTKDPLLALSLALCLLSLGGLPPLA 94
            I D   L   +P+ A++ ++ + S  G+PPLA
Sbjct: 375 YIADLGALAKTNPISAITFSITMFSYAGIPPLA 405

The following BLAST results are available for this feature:

BLAST of CmaCh06G011680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CC50	6.7e-45	100.00	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Cucumis sativus OX=...	[more]
P0CC51	6.7e-45	100.00	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Cucumis sativus OX=...	[more]
P0CC36	2.8e-43	96.77	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Buxus microphylla O...	[more]
P0CC37	2.8e-43	96.77	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Buxus microphylla O...	[more]
Q67IB2	2.8e-43	96.77	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Muilla maritima OX=51...	[more]

BLAST of CmaCh06G011680 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00890.1	7.6e-44	95.70	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]
ATCG01250.1	7.6e-44	95.70	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]
AT2G07689.1	1.3e-06	35.48	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]
ATMG00285.1	1.3e-06	35.48	NADH dehydrogenase 2A	[more]
ATMG01320.1	1.3e-06	35.48	NADH dehydrogenase 2B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	PFAM	PF00361	Proton_antipo_M	coord: 1..93 e-value: 2.7E-26 score: 92.4
None	No IPR available	PANTHER	PTHR22773	NADH DEHYDROGENASE	coord: 1..100
None	No IPR available	PANTHER	PTHR22773:SF104	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 2 A, CHLOROPLASTIC-RELATED	coord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G011680.1	CmaCh06G011680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding