CmaCh06G011330 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G011330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	AT-hook motif nuclear-localized protein
Location	Cma_Chr06: 7636265 .. 7645459 (+)
RNA-Seq Expression	CmaCh06G011330
Synteny	CmaCh06G011330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCTTCAGACAGCTCTGGGCCTGGAACCACTGGCCGGTCGTTACTTTCCGGCGGGTGTTATTTTCTCAGGAAACAAACAGATTTTCTTTTTGTTCTTCTGAAATCTAGCGATTGTTTGTTCTTCACTGGTTTGTCGGAAAATTCCGTCAGCGAGGAAAAAAAAAAAAAAAATCTCCTGAAAGGAAAACGAAGTCGTTTAGTGCACCACTGTGGAAGGAAGTTATTTCTGTCGTAGGTCGTGATCTTTTGCTTTCCCGTTGAAATTTCTCTTAATTCTTCTGTTTTTCTGTTCATTTCATTGATTTTTGTTTGTGGTTTCCTTTTTGATTTTGTTTATAAATTACTATTTGCTCTAAAATGCCGATGTTCATTTTATTTTGAATTTCTGTTGGCTGTTTTCTGGAGCGTTTTATGGTTCAGTGTAAGAGTTCAGATCGTCGAACGGCGGCGGAAAGTTTCGTTCCGGAATCGGCGGTGTTCTTGAACTAACTTGCATGATCCTGTAAAGTGATATCCATTATTTTAGTGATGTTTTTGTGCGTGTTGCAGAAATTGATTCTTGAACTTTCCTTGTTCGTGTAGTTCATCGCAGATTGAAGGGTTTTTTTGTATGTTATTGTTTAATTTTGTTATTATTATTGACTAATCTTCTTCTTCAAAGCAGGAATGAGCATCTAAATCCTTCACTGAAGAAACAGAAATTTTTGAAAAAATAGCAAAAGATTCGAAGTTCTAAGCGATGGAAGAGAGAGAGGCCATAAGTACAGGAGTAACTGTGATAGGAGCCGAAGCTCCGTCGGCTTATCATGTGGCTCCGAGAACCGATAACCCGCCGCCGGCCGGTGGTTCTCCCACCGTCGCCGCCACGCCGGTCAGCGTTGGGTTGCCTGCTAGTGGAACCACAGGAAAGAAGAAGCGAGGCAGACCTAGGAAATACGGCCCGGATGGAACGATCACCATGGCATTGTCGCCATTGCCGCTTTCGTCCTCAGCTCCGGGGGCCGGCGGGTTTTCCATTACCAAGCGAGGGAAGAGCCGGTTAGGCGGCTCCGATTTGAAGCAAAACAAGAAAATGGGAATGCAATATATAGGTAATGAGAAACCAAAGCTGTTTTCTATTATAGCTTTAGAATTTCCATTGATTCCTTATAATATTTGTTGAGTTTTTCATCAGAATTTGCAGTTTGCCTCCCTTTGTGTGTAAAGATTGAGTCAGTTTTCGAGATTCCGTCTCGGTCAGGTCGAAATGCTTCTCTGAATATCATGGAAGATTATGTAATATCTTCCTCTAAAAAAGATTCCCATTTGAATTTTGCCTTACAAAATTCACGTGGGACCTTGCCTGTTAGGATATGTCCTTGTTCAACTCATATAAGATGTGTACGGCTGCTTTTATACTAAGATCTGACCTTTTGGAGGCTCATAGAATATTCTTCTCATGTAGCCTTTTTTGGTCTGTCAGTTCTTCAAATTCCTAACAAAATTGTAATGTTTTTTTTGGTTTTTGTTCTTTACTAATCTGTTTGTTCTTTGTAGATTCTTGATCCATAATTGGGGTTTTGATGGTTTTAGGTCGTAGATCTTAAGTTAATATTGAGCGATCGAGCTTTTTTTGGAGTTATTTTTAGCGTTACTTGGGATATAGATCTTCGTTACACGAGTGATTTCGGGTAAAAGTAGAAACTCGTTTAGCTGGATTGGACAGTGTTGGAAGTCATCAATTAGCTGGATCAGTTCATCTTATCCAAACTTTGTTCTGCATGGAACAATAATGATGATCGTTTAGAGTATGTGAAACCCGAAAAAGAAACGATCGAGTCCACCTTAAAGTATAGTCAAATCCAATTTAAAGCAGTTTAAACATCTTCCTTGTTAGTAGATAGTTTTCAATTGAGAATCTTTTGGGTATTTATAGTAGGTCTTGTTCTTGAATCTTGTTTAAATTACTAAAATGTCCTTTTAGCTTCGTGATAACGGTTTATATCGTCATCGTGTCGTGCATCCAGCTACTTTTGGATTCTAGCATGTGTTAACTGTAGTAATTAAGGATGATTTGGGTGCCACCATTTGGCTCATCTCTTAGGCTTGAGATCTCTTTCTTCTTAAGAGTTTCAGCCAAGTGCTTTTGATTGGGAGAGAATCTGATTGAAGAAACTAGTTTTAGATCGTTTTCTTGAGTCTATTACGTTAGAACTCGGCTACTAGGATCATTAAGAAGAGAATACGCTTAAGAAAACCTGAGTTTCTAGCATGATCCTGATCATTTACACTTAGTATGCCTTATGGTTATGGCTTCTCGATGAACCCGGGATTGAATATCTAAACACAATGAAAGATGAGTTAACTGAAGTACTCGATCATGGTACCTAGTTCGAGATATTTGTTGTTCATTGCAATCGTTTAGTACTAGATGAGCTAAAAAGGCCAGTAATCTAGCGTCACCGTCGGTCGGGTTTTCCATTTTCTTCCTTCCTTTTATAAAGTTTCAGTTACTTTGTTTTTGGGGAGAGTTTTCGCATTCTATTTATGGAAACGAGGGTCGTTTTACTCTTTCTCTAACGACTTGAAACTGTGGAGCATTGTTCGAGTTCTTTGATTTCTTCACCTTTTTTGGGGTTTCAACTGTAGATTTTCTGAAATTATATTCGGATATTCTAATTATATTTGTTCTCGATCAATTGTTACAGGCCAATTGAATGCATGTAATGTCGGTACAAACTTCATGCCTCATGTCATCACGGTCAATGCTGGCGAGGTATGCAGTATGCTCGTTGATTGATTATCATTCATGATAATCATGTCTAACTGTGTAGTCTCTTCAGTTTCTGGTATTTATATTTCCAACCCGTGAGAGTGGTCGTGGTCGCTTCTGTTCTAGCCAAACCGATATCTGTCAAAATATTGTTAAATCTTCTCAGACGTGATTACTGAATAACGTATTTTTTCGTGTTTTATTTTGGATGTTTGGCTGTTGAAAAGGATGTCACTATGAAGATCATATCGTTTTCTCAACAAGGTCCTCGAGCAATCTGTGTTCTTTCTGCGAATGGATTAGTTTCAAATGTCACTCTTCGGCAGCCCGATTCTTCGGGCGGTACTTTAACATATGAGGTACGTCAAGTCCATGAGTCTACTGGCATTATTTCTGCTGTGCTTGTCAAATCTTCAAGAAGTTCAATCCATTTTATATAAGATGAAAACGCGAGACTGAAAATTCGAGATTGGAGATGGTCTTAAATTGTTGTTTCTGTTGAGACGATTAATAGGGATTGTACATTGGCAGGGTCGTTTCGAGATACTTTCCTTATCTGGATCATTCACTCCTTCTGAAAACCAAGGAGCGAGAAGCAGGTCGGGTGGGTTGAGCGTCTCCTTGGCAAGCCCGGACGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTGATAGCTGCAAGCCCTATACAGGTACCAAGCTTCCTTCTTACATCATTTGAAAAGGCAAAACTTGTAGCAGCATTTCCATAGAATGCTTATTCTGAACCTCTTCCTCTAAAACAGGTTGTGGTAGGGAGTTTTGTACCAACCAGCCAACCCGATCCGAAAGTAAAGAAACCGAAGCCCGAGTTGTTGTTAGCTGCAGCCCCTGTTGCTGCAGCGCCAAGCACGACACCAGCCACCACCATGCCTACTTCCTCCAATGCTGATACAGACGACGGGTTAAACGGTAACAGTCTGCAAACTCCTGAATCCCAAAAACCGACTACTTTCCCTCCTGCTAGTTTCGATAGAGAGCGAGACGATTGGGGTGCCAATACTGCTGTGCATTCCTTGCAGGAGCCAAGAAATACCGGTACCGACATCAATATATCGCTACCGGACTAATCTATTTAGTTTCTTACCAAACAATGACCACAGTGATCTGATCTGATATGATCTGATCTAAGCTTTGTTGTTTTTACCAAAATTACCATTTGAGATTTGATAATCACCACAGTCAAAATTAGGGAAAGTTTTTACTATTAACTTTCCATTGTAAGTTTCACACATTTTTCTTAATCATGATCAATTAGGGACTTGTCTGATTTAGTTCTGTTTTTCTGCTCTCTACCTGTTATTAGGATGTTGGATGTAATGAACGAAGAACCTCTGCTGTTTTTTATTTTTTTAAAAATTATTTATTTGCCTATTTTTGACAATTTTCTCTTTTATGGAAATATTTGTTTTATTATTATTATTATTATTATTATTATTATTATTATTATTTTCTTAAAAAATTATTCTGTCTGAAGTGGTGTCTGTAGATTTTGTTTTGAAGTGCCAGGTTATTTCTGTTTCTTTCTTATTTTTGGATAGCCTCTCCCTCACTCCATTGTTTTTCATGTGATAAATGCCACCAATAGCCAAAATGAATGGGCTTCCATGTGACTCGGGTTTGTTACAGGTCGAGTTGGGTTAGATTAAGACGTTTTTTTTTATGGAAACTTGACTCAACCATAAAAGGTTGGGTTAGGTTAGTTCGTGTTATTTATTTTTTGATATAAATAAAATATTAATAATTTATTTTTAAATTACAATGAATTTTAAGTTTCATTAGAGAATAAATAATTTAAAAAATAAAATTTTAATAATCGTAAGAAAAAAAATATATATATTAAAATTTTATAATTCTTGAATTCGAGCCAAAATATTTGTCTTTACACAAATTTATGGATTTATTTTATTTTATTTGCACAAAATGCAGAGTCCAAGCCCAAATAAATATGGGCTTTATTATGCGATATGTGAGCTACCCAAATTCATTGGCACGGCCCATCCGTACAAGTGTATTGGGCCTATCAAAACGCTGTCGTTTTAGTCCTTCAATTCCATTCCATTTTTCTTGAGGGAAAAGACACCGTGGGATCTAAAGAAAAGAAGCGAGCAAGTTTTTGCTTTGGCTTTGGCTTTGGCTTTGGCTTTGTTGAGTTCCTCTTCTCTCAGACGCCTTCGCTTTTCTCTGACCTCTTCGCCATGACGAAGCAGCAAGCCAACTGGTCTCCCTACGACAACAATGGCGGGTACTTTCTCTATCCTTTTCATTCTCTATGCACTGTTTTAGATGTTTATTTTATCTGTTTCGGGGATGAATCAGTGCCACACTTTGTGCAGATCGTGTGTTGCGATTGCCGGCGCCGATTACTGTGTAATCGCCGCTGATACTCGGTTGTCTACGGGTTACAATATCCTCACTCGCGATTACTCCAAAATTTGTAAGCTGTACGTCAATCTCTTGTCGAATTTAAGTTTCTTTCCGAATTTGAATTCTTAAGGTTACTGGAGTTTCACATTGGTTTTATGTTTTGTTTTTTTTTCTCATGTGTGTTAGAAATGGATTATTTCCCCTCTTATGGTGTTTCTTTTCTTCCTGGAAATTTTATTGGGCTTCGGGTTTTATTTTATGGTTTTATGGCTATTGCTTGGGGATAGACTTCTGGATTCTAGAGTTAACTCAGGGTCATAGTTTGGTGGACTTTGAACGAAATGAGCGGTTACTTTTGTTTTTTTGAAGATTTTTCTTTGGTGTGTGATAATAGCTGGATTAGCTTGTGAATGAAATTGGTGCCAACTTACATGAGGTTTGCAGCTGTTGAACTTAAAAATTTGGTCATTTCGTGTTTTTGTTTGGGAAGTTTTGGTTTTGCCTCGGAAGAGTTATGGATCCGTTGGCAGTGTCGAGGAAAGGTTATGAAAGTAATGGAGATGCATTCGGGATGGATCTGTTGGATGCTGATTTATTACATGTGATTTTGTGTTTATTTGAAAAAATGATTTAGGAGGCTAATTATCACGTAAATCCTACCTTTAGTTCAAGGTACAAAATGGTTTATGATACTTCTAATTGGTCAGAGATATTACTAAATTTAGAATGTTATTCAAGTGGCCGATATAAGTGTCTAATGTTATGTATTCTTTTGTTATGTTACGCCATAGTCATTTGATTTCCTCAATTTGGTCACGACAGATTTCCTCATATTTTGTTATTGAACTTCACGAATATAAATCCTGATCACTAATTCCACTACAAGAGTTTCATGTTATGCACTTTTGATTTTATTGTTGTAATGTTACTAGTATACTTCACATACCTAAAAGCTCACGCATCCAAGCACGTGCTTACATTTTATTGATGTGCTTATTTATAATTCTTGGTGTTGCAGGGCCGACAAAGCTGTGATGGCTTCCTCTGGTTTTCAAGCTGATGTGAAAGCCTTACAAAAGGTTTTGTCTGCTAGGCATTTGGTGAGACTTTTATCTAAATGGACATGTCTTCCATGGTTGATCTTTGTAATGCATATTGGCCATATGCTATGTTATAAGATTTATTTCCAAGCCATTGAGTTTTTGATGCACCTCATTGTTCTTATTTTCTTTGAGTTTGATTGTGTTTGGGTTACTCATTTCCTTCTTGTGATTTTGATATCTGTTTTTGTAGCTTTGCTTGTATTAGGCTTGGATTATTGTGTATGTATCATGTACTTCACTTCATATTGCTGCTGCTGCATCCCTTAAAATTGGGATAGCATGGCTTTAATGATTTCCGACGCCCGTGCTTCCCCAATGGCACTTTGTTCCTCTCCTTTTATATGTAGTTTTCAATGACAATATGGTTTTTTGATCTTATAGTGATTTTAGAGTGAAGAGACTCGAACTTCTCTTTTTGTGTTTTTCAATTCTGTAATGTTTTTTCTTTAACTTATTTTGTGTTCATTTTGGTATTTTTGCCCTTTTCGTGTTGGGTTTCTAATCCTAGTCTTTCATTGCGCAAACTAATGTTGTTCATAATGGAACCCCATTTTTCTTTTAAAAAATGTGTACAAGGATTGTTTCGAAAATGGAATTGAACTTTGTGGTGTATAATCTACTTCGACTCTCAATTACACTAATTTGGGAGAAGCCCATGGACAAAGCATCCTGGCAATTTCAGTTTTTAAATTTATAATGTATTTTATGGACATATGATCCGGGTCGGAGGATTGGTATGTAATTCTTTATTTTGATGCCTTATATGTTACTTGCTTGACTTTCAGACCTACCAACATCAGCACAACAAGCAAATGAGCTGCCCGGCGATGGCTCAACTGCTCTCAAATACATTGTACTTCAAACGTTTCTTTCCTTATTATGCTTTTAATGTCTTGGGCGGACTTGATAATGAAGGTATACGACTTCCCTGCTTGTGGTTCCAGTTTTATACCTCACTTTCCCATTAACTATAAGTTATTCTCTTCTTGAAACAGGAAAGGGTTGTGTGTTCACCTATGATGCTGTTGGTTCTTATGAGAGAGTTGGATACAGCGCTCAGGGTTCGGGTTCCACCCTTATTACACCCTTTTTAGATAACCAACTGAAGTCTCCCAGCCCTCTATTATTGCCTGCGCAGGTATGATCTTACCCTTCCTTGGTAGGAATGTGCCTGGAAACTACATATTGGTTCATGGAAAATCGTGTCGAAGATGTTTTCCCCACCTTTTGAAAACTGAGCTAGCTGCTTGGCAAAAATAGACAAACTAATAGATTCCAAACTGAATCAAATAGTTTTTTTTTTTTTTTTTTTATACTTTTGAAATGGATAAGAATAGTGACAAAAACCACTGGGAGTAAGAAACCTGGAAATGCTCCGTTATAGGCATTAAAGAGGGAAAAAATATATCAAACCAAGTGTTTTGATCTCTCCGAAAATATGTTTGTCCCGCAATCTGCGCAGCGCTCCTTTATACTTATTGATACAAAGTGTGAGATCCCACATCGGTTGGGGAGGAGAATGAAGCATTTTTTTACAAGGGTGTGGAAACCTCTCCCTACCTGTTTTAAAAACCTTGAGGGGAAGCCCGAAAAGAAAAGCCCAAAAATAACAATATTGGCTAGCGATGGGCTTGGGTTGTTACAAATGGTTTCAGAGCTAGACACCGAGCGTTGTCCCAGTGAGGAGGTTGAGCCCCGAAGGGGGTAGACATGAGGCGGTGTGCTACCAAGGATCTTAACCCCAGAGGGGGGAGGGTGGATTGAGGGGTCCTACATCGATTGGAGAAGAGAACGAGTACCAGTGAGGACACTGGACTCCGAAGGGGGTGGATTGCGAGATCTTACATCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGGATATGAAAATTTCTCCCTAGGAGACTTGCTTTAAAAACCTTGAGGGGAAGCCCGAAAGAGAAACCCTAAAGTGGACAATATCTACTAGCGGTTGGCTGGGAGCCATTGATCCCCAAGCAAATAACACCAAATTATTCTCCTCCGTCCTCTAACTTATATGCTCCCCCTCGTGTGTCCCTCTTTTGCGTACGAGAGGTTTACTTTGTCTATCTGGTATAGTTCAAAGTTCCAACCAACTGGTCCAGCTCTTTCCAGTTGATTTTGTTATTTTTCTGATTTTGGCGTGCACTCCTATTTTCTCCCCTTCACATCTCTCTCTCTCAGCTAACAAATTACGATGAACAGGATTCTGCAACGCCTCTTTCAGAAGCCGAAGCTATTGACCTGGTGAAAACTGTTTTTGCATCTGCTACTGAGAGAGATATCTACACTGTAATTCTCTTCCACTATTCATATACACCTTATTCTGAGCAAGTATCTTTACAGATTCCAACTCTGAATTTTTTTATGTTCATAGGGTGACAAACTCGAAATCGTCATTCTTAATGCCGACGGTATTCGACGTGAATACTTAGACCTCCGAAAAGATTAGCAGCACGGTGCTCGGCTTGATAGATTGAATGTTACTGCAACCGTATGAACCGCCCATCAGTACCCGTCCCTGAGATTATTGCATTGTGATATTTACGGATGGTTAAGTTTTAGTTTTCTCTCTGTAATGTGACCTCGTTTCCAAATTAAAGTCCCTGTTGTGAACGTGGGTTTGTACTAAAATCTGGAGGGCTGCTGGCTGATATTGATCGATCTCCTTTTTTTTTTTGCTACCGTTAGACCTTAAGGAATTGTTTTTTTTTTAGTGGTAAGTTCATGAGAAGCTGGATTTTTGAATCTTTGGTTTAATTAATTGAAGCTAGGTGGCATATGGTCTTCAAAAAGTTAAAATATCATATTGTTGGTTAAAATATTCGAGATTGAAATTCTCGTTCTACACGACCTGTTTATTTAGTTCTATCCCACCCGAGAGTTGTGATCCCTCTTGTTTCATATCGG

mRNA sequence

GTGCTTCAGACAGCTCTGGGCCTGGAACCACTGGCCGGTCGTTACTTTCCGGCGGGTGTTATTTTCTCAGGAAACAAACAGATTTTCTTTTTGTTCTTCTGAAATCTAGCGATTGTTTGTTCTTCACTGGTTTGTCGGAAAATTCCGTCAGCGAGGAAAAAAAAAAAAAAAATCTCCTGAAAGGAAAACGAAGTCGTTTAGTGCACCACTGTGGAAGGAAGTTATTTCTGTCGTAGGAATGAGCATCTAAATCCTTCACTGAAGAAACAGAAATTTTTGAAAAAATAGCAAAAGATTCGAAGTTCTAAGCGATGGAAGAGAGAGAGGCCATAAGTACAGGAGTAACTGTGATAGGAGCCGAAGCTCCGTCGGCTTATCATGTGGCTCCGAGAACCGATAACCCGCCGCCGGCCGGTGGTTCTCCCACCGTCGCCGCCACGCCGGTCAGCGTTGGGTTGCCTGCTAGTGGAACCACAGGAAAGAAGAAGCGAGGCAGACCTAGGAAATACGGCCCGGATGGAACGATCACCATGGCATTGTCGCCATTGCCGCTTTCGTCCTCAGCTCCGGGGGCCGGCGGGTTTTCCATTACCAAGCGAGGGAAGAGCCGGTTAGGCGGCTCCGATTTGAAGCAAAACAAGAAAATGGGAATGCAATATATAGGCCAATTGAATGCATGTAATGTCGGTACAAACTTCATGCCTCATGTCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCGTTTTCTCAACAAGGTCCTCGAGCAATCTGTGTTCTTTCTGCGAATGGATTAGTTTCAAATGTCACTCTTCGGCAGCCCGATTCTTCGGGCGGTACTTTAACATATGAGGGTCGTTTCGAGATACTTTCCTTATCTGGATCATTCACTCCTTCTGAAAACCAAGGAGCGAGAAGCAGGTCGGGTGGGTTGAGCGTCTCCTTGGCAAGCCCGGACGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTGATAGCTGCAAGCCCTATACAGGTTGTGGTAGGGAGTTTTGTACCAACCAGCCAACCCGATCCGAAAGTAAAGAAACCGAAGCCCGAGTTGTTGTTAGCTGCAGCCCCTGTTGCTGCAGCGCCAAGCACGACACCAGCCACCACCATGCCTACTTCCTCCAATGCTGATACAGACGACGGGTTAAACGGTAACAGTCTGCAAACTCCTGAATCCCAAAAACCGACTACTTTCCCTCCTGCTAGTTTCGATAGAGAGCGAGACGATTGGGGTGCCAATACTGCTGTGCATTCCTTGCAGGAGCCAAGAAATACCGTCCTTCAATTCCATTCCATTTTTCTTGAGGGAAAAGACACCGTGGGATCTAAAGAAAAGAAGCGAGCAAGTTTTTGCTTTGGCTTTGGCTTTGGCTTTGGCTTTGTTGAGTTCCTCTTCTCTCAGACGCCTTCGCTTTTCTCTGACCTCTTCGCCATGACGAAGCAGCAAGCCAACTGGTCTCCCTACGACAACAATGGCGGATCGTGTGTTGCGATTGCCGGCGCCGATTACTGTGTAATCGCCGCTGATACTCGGTTGTCTACGGGTTACAATATCCTCACTCGCGATTACTCCAAAATTTGTAAGCTGGCCGACAAAGCTGTGATGGCTTCCTCTGGTTTTCAAGCTGATGTGAAAGCCTTACAAAAGGTTTTGTCTGCTAGGCATTTGACCTACCAACATCAGCACAACAAGCAAATGAGCTGCCCGGCGATGGCTCAACTGCTCTCAAATACATTGTACTTCAAACGTTTCTTTCCTTATTATGCTTTTAATGTCTTGGGCGGACTTGATAATGAAGGAAAGGGTTGTGTGTTCACCTATGATGCTGTTGGTTCTTATGAGAGAGTTGGATACAGCGCTCAGGGTTCGGGTTCCACCCTTATTACACCCTTTTTAGATAACCAACTGAAGTCTCCCAGCCCTCTATTATTGCCTGCGCAGGATTCTGCAACGCCTCTTTCAGAAGCCGAAGCTATTGACCTGGTGAAAACTGTTTTTGCATCTGCTACTGAGAGAGATATCTACACTGGTGACAAACTCGAAATCGTCATTCTTAATGCCGACGGTATTCGACGTGAATACTTAGACCTCCGAAAAGATTAGCAGCACGGTGCTCGGCTTGATAGATTGAATGTTACTGCAACCGTATGAACCGCCCATCAGTACCCGTCCCTGAGATTATTGCATTGTGATATTTACGGATGGTTAAGTTTTAGTTTTCTCTCTGTAATGTGACCTCGTTTCCAAATTAAAGTCCCTGTTGTGAACGTGGGTTTGTACTAAAATCTGGAGGGCTGCTGGCTGATATTGATCGATCTCCTTTTTTTTTTTGCTACCGTTAGACCTTAAGGAATTGTTTTTTTTTTAGTGGTAAGTTCATGAGAAGCTGGATTTTTGAATCTTTGGTTTAATTAATTGAAGCTAGGTGGCATATGGTCTTCAAAAAGTTAAAATATCATATTGTTGGTTAAAATATTCGAGATTGAAATTCTCGTTCTACACGACCTGTTTATTTAGTTCTATCCCACCCGAGAGTTGTGATCCCTCTTGTTTCATATCGG

Coding sequence (CDS)

ATGGAAGAGAGAGAGGCCATAAGTACAGGAGTAACTGTGATAGGAGCCGAAGCTCCGTCGGCTTATCATGTGGCTCCGAGAACCGATAACCCGCCGCCGGCCGGTGGTTCTCCCACCGTCGCCGCCACGCCGGTCAGCGTTGGGTTGCCTGCTAGTGGAACCACAGGAAAGAAGAAGCGAGGCAGACCTAGGAAATACGGCCCGGATGGAACGATCACCATGGCATTGTCGCCATTGCCGCTTTCGTCCTCAGCTCCGGGGGCCGGCGGGTTTTCCATTACCAAGCGAGGGAAGAGCCGGTTAGGCGGCTCCGATTTGAAGCAAAACAAGAAAATGGGAATGCAATATATAGGCCAATTGAATGCATGTAATGTCGGTACAAACTTCATGCCTCATGTCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCGTTTTCTCAACAAGGTCCTCGAGCAATCTGTGTTCTTTCTGCGAATGGATTAGTTTCAAATGTCACTCTTCGGCAGCCCGATTCTTCGGGCGGTACTTTAACATATGAGGGTCGTTTCGAGATACTTTCCTTATCTGGATCATTCACTCCTTCTGAAAACCAAGGAGCGAGAAGCAGGTCGGGTGGGTTGAGCGTCTCCTTGGCAAGCCCGGACGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTGATAGCTGCAAGCCCTATACAGGTTGTGGTAGGGAGTTTTGTACCAACCAGCCAACCCGATCCGAAAGTAAAGAAACCGAAGCCCGAGTTGTTGTTAGCTGCAGCCCCTGTTGCTGCAGCGCCAAGCACGACACCAGCCACCACCATGCCTACTTCCTCCAATGCTGATACAGACGACGGGTTAAACGGTAACAGTCTGCAAACTCCTGAATCCCAAAAACCGACTACTTTCCCTCCTGCTAGTTTCGATAGAGAGCGAGACGATTGGGGTGCCAATACTGCTGTGCATTCCTTGCAGGAGCCAAGAAATACCGTCCTTCAATTCCATTCCATTTTTCTTGAGGGAAAAGACACCGTGGGATCTAAAGAAAAGAAGCGAGCAAGTTTTTGCTTTGGCTTTGGCTTTGGCTTTGGCTTTGTTGAGTTCCTCTTCTCTCAGACGCCTTCGCTTTTCTCTGACCTCTTCGCCATGACGAAGCAGCAAGCCAACTGGTCTCCCTACGACAACAATGGCGGATCGTGTGTTGCGATTGCCGGCGCCGATTACTGTGTAATCGCCGCTGATACTCGGTTGTCTACGGGTTACAATATCCTCACTCGCGATTACTCCAAAATTTGTAAGCTGGCCGACAAAGCTGTGATGGCTTCCTCTGGTTTTCAAGCTGATGTGAAAGCCTTACAAAAGGTTTTGTCTGCTAGGCATTTGACCTACCAACATCAGCACAACAAGCAAATGAGCTGCCCGGCGATGGCTCAACTGCTCTCAAATACATTGTACTTCAAACGTTTCTTTCCTTATTATGCTTTTAATGTCTTGGGCGGACTTGATAATGAAGGAAAGGGTTGTGTGTTCACCTATGATGCTGTTGGTTCTTATGAGAGAGTTGGATACAGCGCTCAGGGTTCGGGTTCCACCCTTATTACACCCTTTTTAGATAACCAACTGAAGTCTCCCAGCCCTCTATTATTGCCTGCGCAGGATTCTGCAACGCCTCTTTCAGAAGCCGAAGCTATTGACCTGGTGAAAACTGTTTTTGCATCTGCTACTGAGAGAGATATCTACACTGGTGACAAACTCGAAATCGTCATTCTTAATGCCGACGGTATTCGACGTGAATACTTAGACCTCCGAAAAGATTAG

Protein sequence

MEEREAISTGVTVIGAEAPSAYHVAPRTDNPPPAGGSPTVAATPVSVGLPASGTTGKKKRGRPRKYGPDGTITMALSPLPLSSSAPGAGGFSITKRGKSRLGGSDLKQNKKMGMQYIGQLNACNVGTNFMPHVITVNAGEDVTMKIISFSQQGPRAICVLSANGLVSNVTLRQPDSSGGTLTYEGRFEILSLSGSFTPSENQGARSRSGGLSVSLASPDGRVVGGGVAGLLIAASPIQVVVGSFVPTSQPDPKVKKPKPELLLAAAPVAAAPSTTPATTMPTSSNADTDDGLNGNSLQTPESQKPTTFPPASFDRERDDWGANTAVHSLQEPRNTVLQFHSIFLEGKDTVGSKEKKRASFCFGFGFGFGFVEFLFSQTPSLFSDLFAMTKQQANWSPYDNNGGSCVAIAGADYCVIAADTRLSTGYNILTRDYSKICKLADKAVMASSGFQADVKALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDNEGKGCVFTYDAVGSYERVGYSAQGSGSTLITPFLDNQLKSPSPLLLPAQDSATPLSEAEAIDLVKTVFASATERDIYTGDKLEIVILNADGIRREYLDLRKD

Homology

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BLAST of CmaCh06G011330 vs. ExPASy Swiss-Prot
Match: O82531 (Proteasome subunit beta type-1 OS=Petunia hybrida OX=4102 GN=PBF1 PE=2 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 5.3e-113
Identity = 200/223 (89.69%), Postives = 214/223 (95.96%), Query Frame = 0


Query: 388 MTKQQANWSPYDNNGGSCVAIAGADYCVIAADTRLSTGYNILTRDYSKICKLADKAVMAS 447
           MTKQQANWSPYDNNGG+CVA+AGADYCVIAADTR+STGYNILTRDYSKI KLADK VMAS
Sbjct: 1   MTKQQANWSPYDNNGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMAS 60

Query: 448 SGFQADVKALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD 507
           SGFQADV+ALQKVL++RHL YQHQHNKQMSCPAM QLLSNTLY+KRFFPYY+FNVLGGLD
Sbjct: 61  SGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD 120

Query: 508 NEGKGCVFTYDAVGSYERVGYSAQGSGSTLITPFLDNQLKSPSPLLLPAQDSATPLSEAE 567
           +EGKGCVFTYDAVGSYERVGYS+QGSGSTLI PFLDNQLKSPSPLLLPAQD+ TPLSEAE
Sbjct: 121 SEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAE 180

Query: 568 AIDLVKTVFASATERDIYTGDKLEIVILNADGIRREYLDLRKD 611
           AIDLVKT FASATERDIYTGD+LEIVILNA GIRRE ++LRKD
Sbjct: 181 AIDLVKTCFASATERDIYTGDRLEIVILNASGIRREEMELRKD 223

[Close]

BLAST of CmaCh06G011330 vs. ExPASy Swiss-Prot
Match: P42742 (Proteasome subunit beta type-1 OS=Arabidopsis thaliana OX=3702 GN=PBF1 PE=1 SV=2)

HSP 1 Score: 403.3 bits (1035), Expect = 4.9e-111
Identity = 198/223 (88.79%), Postives = 211/223 (94.62%), Query Frame = 0


Query: 388 MTKQQANWSPYDNNGGSCVAIAGADYCVIAADTRLSTGYNILTRDYSKICKLADKAVMAS 447
           MTKQ ANWSPYDNNGG+CVAIAG+DYCVIAADTR+STGY+IL+RDYSKI KLAD+AV++S
Sbjct: 1   MTKQHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSS 60

Query: 448 SGFQADVKALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD 507
           SGFQADVKALQKVL +RHL YQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD
Sbjct: 61  SGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD 120

Query: 508 NEGKGCVFTYDAVGSYERVGYSAQGSGSTLITPFLDNQLKSPSPLLLPAQDSATPLSEAE 567
            EGKGCVFTYDAVGSYERVGY AQGSGSTLI PFLDNQLKSPSPLLLP QDS TPLSEAE
Sbjct: 121 EEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAE 180

Query: 568 AIDLVKTVFASATERDIYTGDKLEIVILNADGIRREYLDLRKD 611
           A+DLVKTVFASATERDIYTGDKLEI+IL ADGI+ E +DLRKD
Sbjct: 181 AVDLVKTVFASATERDIYTGDKLEIMILKADGIKTELMDLRKD 223

[Close]

BLAST of CmaCh06G011330 vs. ExPASy Swiss-Prot
Match: O64464 (Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica OX=39947 GN=PBF1 PE=2 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.1e-99
Identity = 176/213 (82.63%), Postives = 195/213 (91.55%), Query Frame = 0


Query: 398 YDNNGGSCVAIAGADYCVIAADTRLSTGYNILTRDYSKICKLADKAVMASSGFQADVKAL 457
           Y+NNGG+CVAIAGADYCV+AADTRLS GYNILTRD+SKIC+LADK  +ASSGFQ D+KAL
Sbjct: 9   YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKAL 68

Query: 458 QKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDNEGKGCVFTY 517
            K L+AR L YQHQHNK+MSCPAMAQLLSNTLY+KRFFPYYAFNVLGGLD+EGKGCVFTY
Sbjct: 69  HKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTY 128

Query: 518 DAVGSYERVGYSAQGSGSTLITPFLDNQLKSPSPLLLPAQDSATPLSEAEAIDLVKTVFA 577
           DAVGSYER GYSAQG+GS LI P LDNQLKSPSPLLLPA+D+ TPLSE EA+DLVK VFA
Sbjct: 129 DAVGSYERTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFA 188

Query: 578 SATERDIYTGDKLEIVILNADGIRREYLDLRKD 611
           SATERDIYTGDKLEIV++N  G +REY+DLRKD
Sbjct: 189 SATERDIYTGDKLEIVVINKAGTKREYIDLRKD 221

[Close]

BLAST of CmaCh06G011330 vs. ExPASy Swiss-Prot
Match: Q8VYJ2 (AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana OX=3702 GN=AHL1 PE=1 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.7e-68
Identity = 169/328 (51.52%), Postives = 216/328 (65.85%), Query Frame = 0


Query: 10  GVTVIGAEAPSAYHVAPRTDN----------PPPAGGSPTVAATPVSVGLPASGTTG--- 69
           G+TV+ ++APS +HVA R+++          PPP   S   A  P+ +    + TT    
Sbjct: 21  GITVVRSDAPSDFHVAQRSESSNQSPTSVTPPPPQPSSHHTAPPPLQISTVTTTTTTAAM 80

Query: 70  --------KKKRGRPRKYGPDGTITMALSPLPLSSS-APG--------AGGFSIT-KRGK 129
                   KKKRGRPRKYGPDGT+ +ALSP P+SS+ AP            FS + KR K
Sbjct: 81  EGISGGLMKKKRGRPRKYGPDGTV-VALSPKPISSAPAPSHLPPPSSHVIDFSASEKRSK 140

Query: 130 SRLGGSDLKQNKKMGMQYIGQLNACNVGTNFMPHVITVNAGEDVTMKIISFSQQGPRAIC 189
            +   S  +      ++ +G+   C+VG NF PH+ITVN GEDVTMKIISFSQQGPR+IC
Sbjct: 141 VKPTNSFNRTKYHHQVENLGEWAPCSVGGNFTPHIITVNTGEDVTMKIISFSQQGPRSIC 200

Query: 190 VLSANGLVSNVTLRQPDSSGGTLTYEGRFEILSLSGSFTPSENQGARSRSGGLSVSLASP 249
           VLSANG++S+VTLRQPDSSGGTLTYEGRFEILSLSGSF P+++ G RSR+GG+SVSLASP
Sbjct: 201 VLSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNDSGGTRSRTGGMSVSLASP 260

Query: 250 DGRVVGGGVAGLLIAASPIQVVVGSFVP-TSQPDPKVKKPKPELLLAAAPVAAAPSTTPA 306
           DGRVVGGG+AGLL+AASP+QVVVGSF+  T   D K KK K + +L ++P AA P ++ A
Sbjct: 261 DGRVVGGGLAGLLVAASPVQVVVGSFLAGTDHQDQKPKKNKHDFML-SSPTAAIPISSAA 320

[Close]

BLAST of CmaCh06G011330 vs. ExPASy Swiss-Prot
Match: Q4V3E0 (AT-hook motif nuclear-localized protein 7 OS=Arabidopsis thaliana OX=3702 GN=AHL7 PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.1e-65
Identity = 168/327 (51.38%), Postives = 210/327 (64.22%), Query Frame = 0


Query: 1   MEEREAISTGVTVIGAEAPSAYHVAPRTDNPPPAGGSPTVAATPVSVGLPASG-TTGKKK 60
           ME  + IS G   IGAE PSAYH+APR  +  PA     ++  P+   +P+SG  +GKK+
Sbjct: 1   METSDRISPG-GGIGAEVPSAYHMAPRPSD-SPANQFMGLSLPPMEAPMPSSGEASGKKR 60

Query: 61  RGRPRKYGPDGTITMALSPLPLSSSAPGAGGFSITKRGKSRLGGSDLKQ-NKKMGMQYIG 120
           RGRPRKY  +G      +PLP SSS P      + KR + +L G D+K+ +K +G    G
Sbjct: 61  RGRPRKYEANG------APLP-SSSVP-----LVKKRVRGKLNGFDMKKMHKTIGFHSSG 120

Query: 121 QLNAC------NVGTNFMPHVITVNAGEDVTMKIISFSQQGPRAICVLSANGLVSNVTLR 180
           +           VG+NF PHVITVN GED+TM+IISFSQQGPRAIC+LSANG++SNVTLR
Sbjct: 121 ERFGVGGGVGGGVGSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVISNVTLR 180

Query: 181 QPDSSGGTLTYEGRFEILSLSGSFTPSENQGARSRSGGLSVSLASPDGRVVGGGVAGLLI 240
           QPDS GGTLTYEGRFEILSLSGSF  +ENQG++ RSGG+SVSLA PDGRVVGGGVAGLLI
Sbjct: 181 QPDSCGGTLTYEGRFEILSLSGSFMETENQGSKGRSGGMSVSLAGPDGRVVGGGVAGLLI 240

Query: 241 AASPIQVVVGSFVPTSQPD-PKVKKPKPELLLAAAPVAAAPSTTPATTMPTSSNADTDDG 300
           AA+PIQVVVGSF+ + Q D  K +K + E   AA      P + P       S  + D  
Sbjct: 241 AATPIQVVVGSFITSDQQDHQKPRKQRVEHAPAAVMSVPPPPSPPPPAASVFSPTNPD-- 300

Query: 301 LNGNSLQTPESQKPTTFPPASFDRERD 319
                      Q P++F  +S+   +D
Sbjct: 301 ---------REQPPSSFGISSWTNGQD 302

[Close]

BLAST of CmaCh06G011330 vs. TAIR 10
Match: AT3G60820.1 (N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein )

HSP 1 Score: 403.3 bits (1035), Expect = 3.5e-112
Identity = 198/223 (88.79%), Postives = 211/223 (94.62%), Query Frame = 0


Query: 388 MTKQQANWSPYDNNGGSCVAIAGADYCVIAADTRLSTGYNILTRDYSKICKLADKAVMAS 447
           MTKQ ANWSPYDNNGG+CVAIAG+DYCVIAADTR+STGY+IL+RDYSKI KLAD+AV++S
Sbjct: 1   MTKQHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSS 60

Query: 448 SGFQADVKALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD 507
           SGFQADVKALQKVL +RHL YQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD
Sbjct: 61  SGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD 120

Query: 508 NEGKGCVFTYDAVGSYERVGYSAQGSGSTLITPFLDNQLKSPSPLLLPAQDSATPLSEAE 567
            EGKGCVFTYDAVGSYERVGY AQGSGSTLI PFLDNQLKSPSPLLLP QDS TPLSEAE
Sbjct: 121 EEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAE 180

Query: 568 AIDLVKTVFASATERDIYTGDKLEIVILNADGIRREYLDLRKD 611
           A+DLVKTVFASATERDIYTGDKLEI+IL ADGI+ E +DLRKD
Sbjct: 181 AVDLVKTVFASATERDIYTGDKLEIMILKADGIKTELMDLRKD 223

[Close]

BLAST of CmaCh06G011330 vs. TAIR 10
Match: AT3G60820.3 (N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein )

HSP 1 Score: 403.3 bits (1035), Expect = 3.5e-112
Identity = 198/223 (88.79%), Postives = 211/223 (94.62%), Query Frame = 0


Query: 388 MTKQQANWSPYDNNGGSCVAIAGADYCVIAADTRLSTGYNILTRDYSKICKLADKAVMAS 447
           MTKQ ANWSPYDNNGG+CVAIAG+DYCVIAADTR+STGY+IL+RDYSKI KLAD+AV++S
Sbjct: 1   MTKQHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSS 60

Query: 448 SGFQADVKALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD 507
           SGFQADVKALQKVL +RHL YQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD
Sbjct: 61  SGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD 120

Query: 508 NEGKGCVFTYDAVGSYERVGYSAQGSGSTLITPFLDNQLKSPSPLLLPAQDSATPLSEAE 567
            EGKGCVFTYDAVGSYERVGY AQGSGSTLI PFLDNQLKSPSPLLLP QDS TPLSEAE
Sbjct: 121 EEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAE 180

Query: 568 AIDLVKTVFASATERDIYTGDKLEIVILNADGIRREYLDLRKD 611
           A+DLVKTVFASATERDIYTGDKLEI+IL ADGI+ E +DLRKD
Sbjct: 181 AVDLVKTVFASATERDIYTGDKLEIMILKADGIKTELMDLRKD 223

[Close]

BLAST of CmaCh06G011330 vs. TAIR 10
Match: AT3G60820.2 (N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein )

HSP 1 Score: 397.9 bits (1021), Expect = 1.5e-110
Identity = 196/223 (87.89%), Postives = 210/223 (94.17%), Query Frame = 0


Query: 388 MTKQQANWSPYDNNGGSCVAIAGADYCVIAADTRLSTGYNILTRDYSKICKLADKAVMAS 447
           MTKQ ANWSPYDNNGG+CVAIAG+DYCVIAADTR+STGY+IL+RDYSKI KLAD+AV++S
Sbjct: 1   MTKQHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSS 60

Query: 448 SGFQADVKALQKVLSARHLTYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD 507
           SGFQADVKALQKVL +RHL YQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD
Sbjct: 61  SGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD 120

Query: 508 NEGKGCVFTYDAVGSYERVGYSAQGSGSTLITPFLDNQLKSPSPLLLPAQDSATPLSEAE 567
            EGKGCVFTYDAVGSYERVGY AQGSGSTLI PFLDNQLKSPSPLLLP QDS TPLSEAE
Sbjct: 121 EEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAE 180

Query: 568 AIDLVKTVFASATERDIYTGDKLEIVILNADGIRREYLDLRKD 611
           A+DLVKTVFASATERDIYT +KLEI+IL ADGI+ E +DLRKD
Sbjct: 181 AVDLVKTVFASATERDIYTVNKLEIMILKADGIKTELMDLRKD 223

[Close]

BLAST of CmaCh06G011330 vs. TAIR 10
Match: AT4G12080.1 (AT-hook motif nuclear-localized protein 1 )

HSP 1 Score: 260.0 bits (663), Expect = 4.8e-69
Identity = 169/328 (51.52%), Postives = 216/328 (65.85%), Query Frame = 0


Query: 10  GVTVIGAEAPSAYHVAPRTDN----------PPPAGGSPTVAATPVSVGLPASGTTG--- 69
           G+TV+ ++APS +HVA R+++          PPP   S   A  P+ +    + TT    
Sbjct: 21  GITVVRSDAPSDFHVAQRSESSNQSPTSVTPPPPQPSSHHTAPPPLQISTVTTTTTTAAM 80

Query: 70  --------KKKRGRPRKYGPDGTITMALSPLPLSSS-APG--------AGGFSIT-KRGK 129
                   KKKRGRPRKYGPDGT+ +ALSP P+SS+ AP            FS + KR K
Sbjct: 81  EGISGGLMKKKRGRPRKYGPDGTV-VALSPKPISSAPAPSHLPPPSSHVIDFSASEKRSK 140

Query: 130 SRLGGSDLKQNKKMGMQYIGQLNACNVGTNFMPHVITVNAGEDVTMKIISFSQQGPRAIC 189
            +   S  +      ++ +G+   C+VG NF PH+ITVN GEDVTMKIISFSQQGPR+IC
Sbjct: 141 VKPTNSFNRTKYHHQVENLGEWAPCSVGGNFTPHIITVNTGEDVTMKIISFSQQGPRSIC 200

Query: 190 VLSANGLVSNVTLRQPDSSGGTLTYEGRFEILSLSGSFTPSENQGARSRSGGLSVSLASP 249
           VLSANG++S+VTLRQPDSSGGTLTYEGRFEILSLSGSF P+++ G RSR+GG+SVSLASP
Sbjct: 201 VLSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNDSGGTRSRTGGMSVSLASP 260

Query: 250 DGRVVGGGVAGLLIAASPIQVVVGSFVP-TSQPDPKVKKPKPELLLAAAPVAAAPSTTPA 306
           DGRVVGGG+AGLL+AASP+QVVVGSF+  T   D K KK K + +L ++P AA P ++ A
Sbjct: 261 DGRVVGGGLAGLLVAASPVQVVVGSFLAGTDHQDQKPKKNKHDFML-SSPTAAIPISSAA 320

[Close]

BLAST of CmaCh06G011330 vs. TAIR 10
Match: AT4G00200.1 (AT hook motif DNA-binding family protein )

HSP 1 Score: 252.7 bits (644), Expect = 7.6e-67
Identity = 168/327 (51.38%), Postives = 210/327 (64.22%), Query Frame = 0


Query: 1   MEEREAISTGVTVIGAEAPSAYHVAPRTDNPPPAGGSPTVAATPVSVGLPASG-TTGKKK 60
           ME  + IS G   IGAE PSAYH+APR  +  PA     ++  P+   +P+SG  +GKK+
Sbjct: 1   METSDRISPG-GGIGAEVPSAYHMAPRPSD-SPANQFMGLSLPPMEAPMPSSGEASGKKR 60

Query: 61  RGRPRKYGPDGTITMALSPLPLSSSAPGAGGFSITKRGKSRLGGSDLKQ-NKKMGMQYIG 120
           RGRPRKY  +G      +PLP SSS P      + KR + +L G D+K+ +K +G    G
Sbjct: 61  RGRPRKYEANG------APLP-SSSVP-----LVKKRVRGKLNGFDMKKMHKTIGFHSSG 120

Query: 121 QLNAC------NVGTNFMPHVITVNAGEDVTMKIISFSQQGPRAICVLSANGLVSNVTLR 180
           +           VG+NF PHVITVN GED+TM+IISFSQQGPRAIC+LSANG++SNVTLR
Sbjct: 121 ERFGVGGGVGGGVGSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVISNVTLR 180

Query: 181 QPDSSGGTLTYEGRFEILSLSGSFTPSENQGARSRSGGLSVSLASPDGRVVGGGVAGLLI 240
           QPDS GGTLTYEGRFEILSLSGSF  +ENQG++ RSGG+SVSLA PDGRVVGGGVAGLLI
Sbjct: 181 QPDSCGGTLTYEGRFEILSLSGSFMETENQGSKGRSGGMSVSLAGPDGRVVGGGVAGLLI 240

Query: 241 AASPIQVVVGSFVPTSQPD-PKVKKPKPELLLAAAPVAAAPSTTPATTMPTSSNADTDDG 300
           AA+PIQVVVGSF+ + Q D  K +K + E   AA      P + P       S  + D  
Sbjct: 241 AATPIQVVVGSFITSDQQDHQKPRKQRVEHAPAAVMSVPPPPSPPPPAASVFSPTNPD-- 300

Query: 301 LNGNSLQTPESQKPTTFPPASFDRERD 319
                      Q P++F  +S+   +D
Sbjct: 301 ---------REQPPSSFGISSWTNGQD 302

The following BLAST results are available for this feature:

BLAST of CmaCh06G011330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82531	5.3e-113	89.69	Proteasome subunit beta type-1 OS=Petunia hybrida OX=4102 GN=PBF1 PE=2 SV=1	[more]
P42742	4.9e-111	88.79	Proteasome subunit beta type-1 OS=Arabidopsis thaliana OX=3702 GN=PBF1 PE=1 SV=2	[more]
O64464	1.1e-99	82.63	Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica OX=39947 GN=PBF1 ...	[more]
Q8VYJ2	6.7e-68	51.52	AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]
Q4V3E0	1.1e-65	51.38	AT-hook motif nuclear-localized protein 7 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]

BLAST of CmaCh06G011330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60820.1	3.5e-112	88.79	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein	[more]
AT3G60820.3	3.5e-112	88.79	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein	[more]
AT3G60820.2	1.5e-110	87.89	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein	[more]
AT4G12080.1	4.8e-69	51.52	AT-hook motif nuclear-localized protein 1	[more]
AT4G00200.1	7.6e-67	51.38	AT hook motif DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005175	PPC domain	PFAM	PF03479	PCC	coord: 131..245 e-value: 1.1E-28 score: 99.8
IPR005175	PPC domain	PROSITE	PS51742	PPC	coord: 126..269 score: 40.831657
IPR005175	PPC domain	CDD	cd11378	DUF296	coord: 131..244 e-value: 1.72872E-26 score: 102.279
IPR029055	Nucleophile aminohydrolases, N-terminal	GENE3D	3.60.20.10	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	coord: 395..610 e-value: 2.1E-62 score: 212.5
IPR029055	Nucleophile aminohydrolases, N-terminal	SUPERFAMILY	56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	coord: 396..609
IPR001353	Proteasome, subunit alpha/beta	PFAM	PF00227	Proteasome	coord: 400..594 e-value: 1.2E-33 score: 116.2
None	No IPR available	GENE3D	3.30.1330.80		coord: 131..258 e-value: 2.7E-31 score: 110.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 272..309
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 267..317
None	No IPR available	PANTHER	PTHR31500:SF77	AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN	coord: 1..320
None	No IPR available	CDD	cd03757	proteasome_beta_type_1	coord: 395..610 e-value: 1.39273E-128 score: 374.673
None	No IPR available	SUPERFAMILY	117856	AF0104/ALDC/Ptd012-like	coord: 129..251
IPR039605	AT-hook motif nuclear-localized protein	PANTHER	PTHR31500	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	coord: 1..320
IPR016050	Proteasome beta-type subunit, conserved site	PROSITE	PS00854	PROTEASOME_BETA_1	coord: 406..453
IPR023333	Proteasome B-type subunit	PROSITE	PS51476	PROTEASOME_BETA_2	coord: 402..595 score: 48.290829

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G011330.1	CmaCh06G011330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051603	proteolysis involved in cellular protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005839	proteasome core complex
molecular_function	GO:0003680	minor groove of adenine-thymine-rich DNA binding
molecular_function	GO:0004298	threonine-type endopeptidase activity