CmaCh06G010910 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G010910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pre-mRNA cleavage factor Im 25 kDa subunit
Location	Cma_Chr06: 7366043 .. 7370638 (-)
RNA-Seq Expression	CmaCh06G010910
Synteny	CmaCh06G010910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGATCGCAGGTCGCCAAGGTTTTTCTACTGCCTCCCGGCAGCTGCTCAGTGTACGCAGCCATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACTAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCATGAAAGTCAAGTACTGCAAATTTACTCCATTTCTTAAACCCTAACTTTATGGTTTTTTCAACGTTTTAGAGTTGTATTTTCTCGAAAGTTAGGAACTATGGCCGTTTCTTAGTGTGGATTCCTGGTCATTTTACATTTTATGTGTTTAGCTTTACTAGAAACCATTTAATGTGTTTCTAATTTCAAGAAATGCGCGAGCTTGGACTAAAGTTCTGGATGAAATTGTGTTATTGATTTTATTCAAGCCATTTGTTCGTTGATAAACTCAGTGCTTTCTTATTGCTATTTGTTTCGTTGTTTCGTCATCGCCTGGAAATTTTGTCTTCCATTTATTGGTTTTGGAGGGGCTTTGACGGGAATGAGTAACTTGTCCTGGTTCTTGGTTCACAGCTATATGAAGGAGGGCATGAGGACGAGTGTTGAAGCAATTCTTCTGGTCAGTGCGCATCTTCATCATTTTTCATCTCAATGTACTCATTTCCTTATTATTATTATCTTTCTAAAAAATTTGAAGTTTAAAGAGATCATCAAGATATAGGTGTACTAGTTGGATACCATGGTTTGTGTTTTTCAGTTGATATTGAAATTCATTGAACTGTGAATCACTGAAATGTTTTATAACGAATTATAATATTTAAAAGGTACAAAAATATTTATCGTCTTGCATATCTACATCCTTCATCTAGAATATTTGAGTATATGTAGGCTATTAGAAGGAAAGTTTCATTGCCGAATCCTTTATTGTCCTATCTGATCTTTACCCGAGCAGCACGCGTTGGAAGACAAGATGACTAAATTTGAACTTCCATCATGTCATCTTTTAGATTATACCCGCCTATGGTTTCCTCCAGCTAGTAAATTTAACATGAGGTCTCCCCACCTATGACTGCTTCCAACTGTAAATTTTTCCCGTAATCCTTCGAAGCCCATGTACATTTTGATGCTCAACAAACATGTTGTTTCTTATATGTATGTACTGAATACATTTAATGTGTAATATATTAATTAATCTGTTTTTGGTTGCATAGCTGAAGTAGATATTTTAGTACCTCTGTAACTGACATTTATGTATTTTGCAAAAAAGCTCCAAAATATTCAAAATATTTTAGGATTTAAGCCAAGGAAAGTTGGATTTGAAATACAGAATGTGCCCAAAATGTAAAAACAGGTTCACTGAAGTTGATGCTTTAGGAATTTCCTACCAGACAATAACAATTTATTTACGATATTTGTGGATGAGATGAAAGTTCAACTGCATGTACTTGGGAGAGCCAGTAGGATTTCGATTTATCGCATTGTGCTTCCCAACCTACCTATAGTCTAAGTAGCATTCTACTAGTAAGATGGTGACTATAACTGATTTCATTTTGTTAAGATGGCCAGCTCGAGGACCAACGAGGATCTTGGCTCTTTATTCTAGAGGTGAAGGAATCGACTTTCTCCTTAATGGTCTTGATTAAGGTCCCATTTAGGAAATTAGGGAGGCAATAATACTGCAACCAGGAGAGGTAATAATACTGCTGGAAGTCTCAGACGTATATCTCCAAGTTCATTTAGGAAATTAATAATTACTGTGCTGAAAATAGGAAGGGAATCCTATAAAGTCTTGGAAGATCTTTAGCCACAAAAAGGAGGATGGTTACTTGCTTCCACGAATTTGGGTAAAAAAGATCAACATATTTGTTGAAATGCGAGGGTTTCTAGAAGCTTGATTTTTAGAGAAACCTGTTGGATGTTGAAATACAGGGGCAGCCTAATGTTTCAAATTTTGATAAGAAAAAGAGCATGAAACCAACGGGAGACCAAAAACAGGTGGATAAGCAGTCCAACCCCGAAGCTAAAGGGGTTTACAGAATAGGACCTCAATTATACAAGGCATACTATAATTACAAAAAGCAACGTGCGAATTGAAACAAATACTTTATTGAGTTCTTTTTACGTTGCTTTTTGTTTTACTCCTTTATGGAGTTTGATCATTTGAGCAATAGTATATTTTCATTACATCAATGAAACGTTTTGTTTCTTGTTCAAAAAATTACAAAAACATTGTTTTTTGGGCACACAAAGAGGAAGCTGATTGGAATGCAGGATCCTTGCACCCCTTAGATTTGTTTCTGAAGATTCTATAGTTTTTCTCGGCTTATGATTCAAACAACAGCTTTGATAGAATTAAACAAGGGAGTTCTAGTTTTCTGCCATTTTAAGTTTGGCACTGAATGTTTCCTTAATTCATTAACTTTCTCTTTAGTTGGTGTATTTTAGTGACTAATATTTAAGAGAACCATGTACTTTACTGTGATGGAATTTTATATTTTTCGTTTTTTCTTTTTACTTCCACAGGTGCAAGAACATAAGCATCCCCATATTCTACTTCTGCAAATTGGAAATACCTTTTGCAAGCTCCCTGGTGGCCGGTTGAAGCCAGGAGAAAATGGTAAGATTTTATATACATTTGAAGCCCCCCTGCATCCCATTGAGTAAAAAATCTCTCTCTCATGTTTTATCTTAATATCCACAGAAATTGAAGGTTTAAAGAGGAAACTGACGAGCAAACTGGGTGCAAATTCACCAGCCCTCCAGCCTGATTGGCAGGTTTGGGTCATCTCTTGCTGTGTGCAAATCTATTCGCAGAAGTTATATTTGTTTCTACCCAAAGTTATATTATTCATTGCACATTTTCTGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATAACGAAACCCAAGGTATGATCTCTCTCTCTCATGTTCCCCAGCCCCCAGCAGTGCTGATAGCACTTTTTTGGTGGTGACTTTGATAGGGAAGAATGTAGGCTATCAGTTATCTATCTATATGCATGTATGTATGTGCCTGTGTATACTATGCAGATTATTTATTACTCAAGCTGATTGGATAGCCTCTTTACCCTAGGGAAGGCCCTTGTAACAGCCCAAGCCCACCGTTAGCAAATATTGTCCTCTTTGGGTTTTTTCTTTCGAGTTTTTATAACGTGTCTGCTAGGGAGAGGTTTCTACACTCTTATAAAGAATGTTTTGTTCCCCTCTCCAACTAATGTGGGATCTCACAATCCACCCCCCCTTCGAGGCCCAGTGTCCTCGCTGGCACTCGTTCCTCTCTCCATTAAATGTGCGATTTCACAATTCACCCCCTTCGAGGCTCACACAAACGTTCATCTCTCAAATTGATGTGGGATCTCACAATCCACCCCCTTCAGGGTCTAGCGTCCTCGCTGACACACAGCCCGATGTCCACCCCCCTTCGCGGCTCAGCGTCCTTGCTAGCATACCGCCCAGTGTTTGGCTTTAATACCATTTATAACAGCTCAAGCCCACCACTAACAAATTTATAACGAGTCTCCTATGGAGAGGTTTCCACACTCTTATAAAGAATGTTTCATTCCTCTTTCCAACCAATATGGGATCTCACAATGGTCCACTGTTTTCTTACTTTGATTGGCATTATAAAGAGAGTTGAAATTATTTTTAGGAAGCTTATTTTTCCCCAAAAAAAAATCCTAATTAGGGTTTTTGATGATCCAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAGAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAACTCTATGACAATGTTCAGGTAAGTTGCATTTTTCTTTGTAGATCCTCATAAGTAGGAAAAAAAAAGTTTATTGTCATGCATATTCTTAAGCGATTTTTGGCATGTCGGGCAATATCGAAAACCTGCTTAATTATAAGCAATTAGTATGTGGTGGTGGTGGTTATCTAGGGATAGATGAATTAAGATAGATTTTCTGGATGCTGGATGATACTGATAGAGTACATGTAAATCCATTTGTCTCAAAATACCATGCATTTTATTAGCTAAACACTAGTTTTCGGATATCGCACTTGATCACAGAGATACGGACCTGTTATATCGACGATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGAGCTTGCAAGACAAGAACTTAAAATTTGTGGCATGAACAGACTCCAAATTTGCAGCTGTGAGATATTCCTCTTAGCTTAGTTAGAACTTAAGGGGACATCATGAAACCTTTCTTGAGTTAGGATAGCATACTTATTATAGACTTTTTGTTCTCGACGTTTTCGTCGAAGTGTTTATGAGCCAGAACCCGAAAAAATTTATATTACTTCTAACAATAGCAGAAAAATGAAAACCGACTGACGGTTTGTGTAACGATTTAACTTGATGAAAATCTTAGATGGGTGTAATGTATGTTGAATCAATTGTAACAGTGGTTAAATTGTGGAAACAAAGAATGTTGAATCAATAGTAACAGTGGTTAAATTGTGGAAACAAAGA

mRNA sequence

CTGATCGCAGGTCGCCAAGGTTTTTCTACTGCCTCCCGGCAGCTGCTCAGTGTACGCAGCCATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACTAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCATGAAAGTCAACTATATGAAGGAGGGCATGAGGACGAGTGTTGAAGCAATTCTTCTGGTGCAAGAACATAAGCATCCCCATATTCTACTTCTGCAAATTGGAAATACCTTTTGCAAGCTCCCTGGTGGCCGGTTGAAGCCAGGAGAAAATGAAATTGAAGGTTTAAAGAGGAAACTGACGAGCAAACTGGGTGCAAATTCACCAGCCCTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATAACGAAACCCAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAGAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAACTCTATGACAATGTTCAGAGATACGGACCTGTTATATCGACGATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGAGCTTGCAAGACAAGAACTTAAAATTTGTGGCATGAACAGACTCCAAATTTGCAGCTGTGAGATATTCCTCTTAGCTTAGTTAGAACTTAAGGGGACATCATGAAACCTTTCTTGAGTTAGGATAGCATACTTATTATAGACTTTTTGTTCTCGACGTTTTCGTCGAAGTGTTTATGAGCCAGAACCCGAAAAAATTTATATTACTTCTAACAATAGCAGAAAAATGAAAACCGACTGACGGTTTGTGTAACGATTTAACTTGATGAAAATCTTAGATGGGTGTAATGTATGTTGAATCAATTGTAACAGTGGTTAAATTGTGGAAACAAAGAATGTTGAATCAATAGTAACAGTGGTTAAATTGTGGAAACAAAGA

Coding sequence (CDS)

ATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACTAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCATGAAAGTCAACTATATGAAGGAGGGCATGAGGACGAGTGTTGAAGCAATTCTTCTGGTGCAAGAACATAAGCATCCCCATATTCTACTTCTGCAAATTGGAAATACCTTTTGCAAGCTCCCTGGTGGCCGGTTGAAGCCAGGAGAAAATGAAATTGAAGGTTTAAAGAGGAAACTGACGAGCAAACTGGGTGCAAATTCACCAGCCCTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATAACGAAACCCAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAGAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAACTCTATGACAATGTTCAGAGATACGGACCTGTTATATCGACGATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGA

Protein sequence

MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

Homology

[Close]

BLAST of CmaCh06G010910 vs. ExPASy Swiss-Prot
Match: Q8GXS3 (Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CFIS2 PE=1 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 4.3e-104
Identity = 177/200 (88.50%), Postives = 188/200 (94.00%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEH 
Sbjct: 1   MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENE +GLKRKLTSKLG NS AL PDW +GECVA WW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRF FNMI++
Sbjct: 181 PVISTIPQQLSRFHFNMISS 200

[Close]

BLAST of CmaCh06G010910 vs. ExPASy Swiss-Prot
Match: Q3ZCA2 (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus OX=9913 GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 6.0e-66
Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 0


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of CmaCh06G010910 vs. ExPASy Swiss-Prot
Match: O43809 (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens OX=9606 GN=NUDT21 PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 6.0e-66
Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 0


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of CmaCh06G010910 vs. ExPASy Swiss-Prot
Match: Q9CQF3 (Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus OX=10090 GN=Nudt21 PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 6.0e-66
Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 0


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of CmaCh06G010910 vs. ExPASy Swiss-Prot
Match: Q5RAI8 (Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii OX=9601 GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 6.0e-66
Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 0


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of CmaCh06G010910 vs. TAIR 10
Match: AT4G25550.1 (Cleavage/polyadenylation specificity factor, 25kDa subunit )

HSP 1 Score: 378.6 bits (971), Expect = 3.0e-105
Identity = 177/200 (88.50%), Postives = 188/200 (94.00%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEH 
Sbjct: 1   MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENE +GLKRKLTSKLG NS AL PDW +GECVA WW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRF FNMI++
Sbjct: 181 PVISTIPQQLSRFHFNMISS 200

[Close]

BLAST of CmaCh06G010910 vs. TAIR 10
Match: AT4G29820.1 (homolog of CFIM-25 )

HSP 1 Score: 243.0 bits (619), Expect = 2.0e-64
Identity = 111/193 (57.51%), Postives = 145/193 (75.13%), Query Frame = 0


Query: 6   VVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHIL 65
           +V+ YPLSSY FG+KE    KD  ++DR+ R+K NY   G+RT VEA+LLV+  KHPH+L
Sbjct: 28  MVDLYPLSSYYFGSKEALRVKDEIISDRVIRLKSNYAAHGLRTCVEAVLLVELFKHPHVL 87

Query: 66  LLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFE 125
           LLQ  N+  KLPGGRL+PGE++IEGLKRKL SKL  N       +++GEC+ +WWRPNFE
Sbjct: 88  LLQYRNSIFKLPGGRLRPGESDIEGLKRKLASKLSVNENVGVSGYEVGECIGMWWRPNFE 147

Query: 126 TVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVIST 185
           T+MYP+ PP+I  PKEC KLF+V L   + F VPKN KLLAVPL +L++N + YGP++S 
Sbjct: 148 TLMYPFLPPNIKHPKECTKLFLVRLPVHQQFVVPKNFKLLAVPLCQLHENEKTYGPIMSQ 207

Query: 186 IPQQLSRFQFNMI 199
           IP+ LS+F FNM+
Sbjct: 208 IPKLLSKFSFNMM 220

The following BLAST results are available for this feature:

BLAST of CmaCh06G010910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GXS3	4.3e-104	88.50	Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q3ZCA2	6.0e-66	62.43	Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus OX=9913 ...	[more]
O43809	6.0e-66	62.43	Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens OX=960...	[more]
Q9CQF3	6.0e-66	62.43	Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus OX=100...	[more]
Q5RAI8	6.0e-66	62.43	Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii OX=960...	[more]

BLAST of CmaCh06G010910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25550.1	3.0e-105	88.50	Cleavage/polyadenylation specificity factor, 25kDa subunit	[more]
AT4G29820.1	2.0e-64	57.51	homolog of CFIM-25	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PIRSF	PIRSF017888	CPSF-25	coord: 1..200 e-value: 2.3E-95 score: 316.0
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PFAM	PF13869	NUDIX_2	coord: 6..193 e-value: 4.8E-83 score: 277.4
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PANTHER	PTHR13047	PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT	coord: 1..182
None	No IPR available	GENE3D	3.90.79.10	Nucleoside Triphosphate Pyrophosphohydrolase	coord: 6..197 e-value: 2.0E-91 score: 306.6
None	No IPR available	PANTHER	PTHR13047:SF2	PRE-MRNA CLEAVAGE FACTOR IM 25 KDA SUBUNIT 2-LIKE	coord: 1..182
IPR000086	NUDIX hydrolase domain	PROSITE	PS51462	NUDIX	coord: 46..171 score: 8.766791
IPR015797	NUDIX hydrolase-like domain superfamily	SUPERFAMILY	55811	Nudix	coord: 49..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G010910.1	CmaCh06G010910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006378	mRNA polyadenylation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005849	mRNA cleavage factor complex
molecular_function	GO:0003729	mRNA binding