CmaCh06G010740 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G010740
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ubiquitin-conjugating enzyme
Location	Cma_Chr06: 7231436 .. 7235236 (-)
RNA-Seq Expression	CmaCh06G010740
Synteny	CmaCh06G010740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTCCAAGCAAACGCCGAGAGATGGACTTGATGAAACTGTTAAGTCTCTTTTTCCTTTTCTGGGTTTATGAACTTGTTTCTTATTGACTGTTCTTGGATGGATTCTTCTGGGTTTTGACAGGATGATGAGCGATTACAAAGTGGAGATGATTAATGATGGGATGCAAGAGTTTTATGTAGATTTTCATGGACCCAGTGAGAGTAAATCTTCTAAACTTTGATCTATAAGTTTCATTACATTTTTGTTTTGTTTTGTTTGTTCATGTTCTTGTTCTTGATGAGTTTGGATCTCTGATGCATGTGGTTTTCTTTATTTGCTGAACTCTGGATTTGATTTGATCTATATATAATTTCCTAAGTTCACTGTTAGCAGATTTTGTCCTTTTTAGGCTTTCTTTTTTGGGTTTTCTCTCAAGGTTTTTAAAACGCGTTTGTTAGGGAGAGGTTTCTACACTCTTATAAGAAATGTTTCGTTCTATTCTCCAACCAGTTTGGACTATTACGAATGGTATAGAGCCGGACACTGGGCGGTGTGTCAGTGAGGACGTTGGCTCTCAAGGGGGTGGATTGTGAGATCCTACATTGGTTGGAGAGGGGAATGAAGCATTCCTTATAAAGGTGTGGAAGCCTCTCATGAGTAGACGCGTTTTAAAACCTTGAGGGGAAGCTCGAGAGGGAAAGCTCAAAGAGGACTATATCTTCGGGCGATGTGCCAATGAGGACACTGGGTCCCCAAGGAGGTGGATTGTGAAATCCCACATTGGTTGGAGAGGGGAACGAAGTATTCTTTATAAGGGTGTGGAAACCTCTCATTAGTAGACGCGTTTTAAAACCTTGAGGGGAAGCTCGAAAGGGAAAGCTCAAAGAGGGCTATATCATCGGGCGGTGTGCCAACGAGGATGCTGGGTCCACAAGGAGTGGACTGTGAGATCCTACATCGGTTGGAGAGGGGAATGAAGTATTCCTTATAAGGGTGTGGAAACCTCTCATTAGTAGACGCGTTTTAAAACTTTGAGGGGAAGCTCGAAAGGGAAAGCTCAAAGAGGGCTATATCATCGGGCGGTGTGCCAACGAGGATGCTGGGTCCACAAGGAGTGGACTGTGAGATCCTACATCGGTTGGAGAGGGGAACGAAGTATTCCTTATAAGGGTGTGGAAACCTCTCATTAGTAGACGCGTTTTAAAACCTTGAGGGAAAGCTCAAAGAGGGCTATATCATCGGGCGGTGTGCCAACGAGGACGCTGGGTCCACAAGGAGTGAACTGTGAGATCCTACATCGGTTGGAGAGGGGAACAAAGTATTCCTTATAAGGGTGTAGAAACCTCTCATTAGTAGACGCGTTTTAAAACCTTGAGGGAAAGCTCGAAAGGGAAAGCTCAAAGAGGGCTGTATCATCGGGCGGTGTGCCAACGAGGATGCTGGGTCCACAAGGAGTGAACTGTGAGATTCTACATCGGTTGGAGAGGGGAACGAAGTATTCCTTATAAGGGTGTGGAAACCTCTCATTAGTCGACACGTTTTAAGAACCTTGAGGGGAAGCCCGAAAGGGAAAACCCAAAAAAGACAATATTTGCTAGCGGTGGGCTTAGGCTGTGGACCTGTCGAGTGTTTTATCATCGGTTTTCAAACATATGAAGTTATGGTTTTGTATTTTCCTTCCTTTTTGTTCCTTTTTTAGTTGCTTTAGCTGATTTTGATCTAAATAATTTGAGAATCTGTTCTTCTGAATGTTCATAGAGTAACAGATTGTTTATCTGGTTATGTTGTGTATGGCTATACTCATTTGAGGGACCTAATTCTCCCATGTTCTTGGAGAACAGAAGGAAATGGATAAAGAAAAGTCACAATGTGATGGGTTGTCTGGCAGGTCCTTATCATGGAGGTGTATGGAGGATACGAGTCGAACTCCCCGATGCTTACCCGTATAAATCGCCTTCGATAGGATTCGTTAACAAAATTTACCACCCCAATGTTGATGAGATGTGAGTTCATCATGTGTTCTTAGCTTAAAATGAAGTCGGTTTCAAGTCGTTTCATGTTTGGTCTTTGTTTCAGGTCGGGTTCGGTTTGTTTGGACGTTATCAATCAAACTTGGAGTCCCATGTTCGGTAGGCAAACTTCTTGGTTTGTTGTTTATTTCCCGTCATCTCGTGTTTTTCGGATTAATCACGCATCTTTATATGCTATACTTTCAGATCTTGTAAATGTTTTTGAAGTGTTCCTACCACAACTTCTTTTGTATCCCAATCCATCAGATCCTTTGAATGGAGAGGCTGCAGCCTTGATGATGCGTGACCGTGTTGCTTATGATCAAAGAGTAAAAGGTATTGATTTTCTTGTTGTTTTCGTGTCGAAGCACGAACGTATCGGAAATGAGCTTTACGAATGATTTTTCTAAAGCTTGCTGTCCATGTATAGCATTAATTTGATAGTTGTGTCGGGATAAGATACTCTTTATCTTTGATGTTTGTTCTCCTATCCTACTAGCCAGCCCTCGCTAGACTTATGGGCGATCCCTAGACTCGTGATTTGTGAGATCCCATATCGGTTAGAGAGGGGAACGAAACATTCCTTATAAGAGGTGTAGAAACCTCTCCCTAGTAGATGCGTTTTAAAACCGTGAGGCTGACGGCGATACGTAACAGGCCAAAGTGGACAATATCTGCTAGCGGTGGGCTTGGGCTGTTATAAATGGTATTAGAGTTAGACACTGGACGGTGTGTTAGCAAGGACGTTGGGCCCCCAAGGGGTGTGGGGTGGATTGTGAGATCCCATATCGGTTGGAGAGGGGAACGAAACCTTCCTTATATGGGTGTGGAAACCTCTTCCTAGTAGACGCGTTTTAAAACTGTGAGGCTGACGACGATACGTAACAGGCTAAAGTTGAGAATATTTGCTAGCGGTGGACTTGAGTTGTTATAAATGATATTAGAGCTAGACACTGGACGGTGTGTCAGCGAGGACGCTAGGCGCCCAAGGGGGGTGGATTGTGAGATCCCACATCAGTTGGAGAGGGGAACATAGCATTTCTTATATGGGTGTGAAAACCTCTTCCTAGTAGATGTGTTTTAAAACTGTGAGGTTGATGACGATACGTAACGGGCCCAAGTGGACAATATTTGTTAGCAGTGGACTTGAGCTGTTATAAATGATATTAGGGGTAGACATCGGGTGGTTTGCCTGCGAGGACGTTAGAACCCAAGGGGGGTAGATTATGAGATCTCACATTGGTTGGAGAGCGAAACAAAACCTTCCTTATAAGGGTGTGGAAACCTCTCTCTAGTAAACGCGTTTTAAAACCGTGAGATTGACGACAATGCGTAACGGGTCCAAATGATCTGTTAGCAGTGAGCTTGGGTTGTTAACATTAATAGCGAAGATAGCACATGTGAGTTCTCATGTTATCGTATCTTATTACAGAATACCGTGAAAGATACGCCAAGGCAGAAGAGATAGTAGCTGCACCCGACCAATCAAGCGACGAGGAACTAAGTGAAAATGAATCTGAGTCGAGCGACGAGGAAGTTGCAGGGAAAGCGGACCTCTAAGGGCTCATTTGAAGTAGCTTCCACTGTACAAATTGTGTTTCTGCTTGAATGCTTTCTTCTGTCATGTATATAAGAAAATGAATGCTTTTTGATGTTGCAATCATCATATGGTGTTAGATTATGTGAAGGAAGACTTTGTGATTCAAAACTTGCTATGCTTTGCTTAAGGTTAAAAGCTCTACAACTGACCTTTTAAACTAAAGTTCATATTCAATTTCAATATTACTTGTTTATGTTTTATTCTAA

mRNA sequence

ATGTCTTCTCCAAGCAAACGCCGAGAGATGGACTTGATGAAACTGATGATGAGCGATTACAAAGTGGAGATGATTAATGATGGGATGCAAGAGTTTTATGTAGATTTTCATGGACCCAGTGAGAGTCCTTATCATGGAGGTGTATGGAGGATACGAGTCGAACTCCCCGATGCTTACCCGTATAAATCGCCTTCGATAGGATTCGTTAACAAAATTTACCACCCCAATGTTGATGAGATGTCGGGTTCGGTTTGTTTGGACGTTATCAATCAAACTTGGAGTCCCATGTTCGATCTTGTAAATGTTTTTGAAGTGTTCCTACCACAACTTCTTTTGTATCCCAATCCATCAGATCCTTTGAATGGAGAGGCTGCAGCCTTGATGATGCGTGACCGTGTTGCTTATGATCAAAGAGTAAAAGAATACCGTGAAAGATACGCCAAGGCAGAAGAGATAGTAGCTGCACCCGACCAATCAAGCGACGAGGAACTAAGTGAAAATGAATCTGAGTCGAGCGACGAGGAAGTTGCAGGGAAAGCGGACCTCTAAGGGCTCATTTGAAGTAGCTTCCACTGTACAAATTGTGTTTCTGCTTGAATGCTTTCTTCTGTCATGTATATAAGAAAATGAATGCTTTTTGATGTTGCAATCATCATATGGTGTTAGATTATGTGAAGGAAGACTTTGTGATTCAAAACTTGCTATGCTTTGCTTAAGGTTAAAAGCTCTACAACTGACCTTTTAAACTAAAGTTCATATTCAATTTCAATATTACTTGTTTATGTTTTATTCTAA

Coding sequence (CDS)

ATGTCTTCTCCAAGCAAACGCCGAGAGATGGACTTGATGAAACTGATGATGAGCGATTACAAAGTGGAGATGATTAATGATGGGATGCAAGAGTTTTATGTAGATTTTCATGGACCCAGTGAGAGTCCTTATCATGGAGGTGTATGGAGGATACGAGTCGAACTCCCCGATGCTTACCCGTATAAATCGCCTTCGATAGGATTCGTTAACAAAATTTACCACCCCAATGTTGATGAGATGTCGGGTTCGGTTTGTTTGGACGTTATCAATCAAACTTGGAGTCCCATGTTCGATCTTGTAAATGTTTTTGAAGTGTTCCTACCACAACTTCTTTTGTATCCCAATCCATCAGATCCTTTGAATGGAGAGGCTGCAGCCTTGATGATGCGTGACCGTGTTGCTTATGATCAAAGAGTAAAAGAATACCGTGAAAGATACGCCAAGGCAGAAGAGATAGTAGCTGCACCCGACCAATCAAGCGACGAGGAACTAAGTGAAAATGAATCTGAGTCGAGCGACGAGGAAGTTGCAGGGAAAGCGGACCTCTAA

Protein sequence

MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVDFHGPSESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEEIVAAPDQSSDEELSENESESSDEEVAGKADL

Homology

[Close]

BLAST of CmaCh06G010740 vs. ExPASy Swiss-Prot
Match: P42748 (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana OX=3702 GN=UBC4 PE=2 SV=2)

HSP 1 Score: 287.3 bits (734), Expect = 1.2e-76
Identity = 147/188 (78.19%), Postives = 162/188 (86.17%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVDFHGPSESPYHGGVWRIRVELPDAYP 60
           MSSPSKRREMD+MKLMMSDYKVE INDGMQEFYV+F+GP +S Y GGVW+IRVELPDAYP
Sbjct: 1   MSSPSKRREMDMMKLMMSDYKVETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYP 60

Query: 61  YKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPS+GF+ KIYHPNVDE+SGSVCLDVINQTWSPMFDLVNVFE FLPQLLLYPNPSDPL
Sbjct: 61  YKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPL 120

Query: 121 NGEAAALMMRDRVAYDQRVKEYRERYAKAEEIVAAPDQSSDEELSENESESSDEE----- 180
           NGEAAALMMRDR AY+QRVKEY E+YAK  E   + D+SSDEELSE E  S +E+     
Sbjct: 121 NGEAAALMMRDRPAYEQRVKEYCEKYAKPGE--GSEDKSSDEELSEEEYGSDNEDDDDDD 180

Query: 181 --VAGKAD 182
             +AGK D
Sbjct: 181 VAIAGKPD 186

[Close]

BLAST of CmaCh06G010740 vs. ExPASy Swiss-Prot
Match: P42749 (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2)

HSP 1 Score: 283.5 bits (724), Expect = 1.7e-75
Identity = 145/186 (77.96%), Postives = 160/186 (86.02%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVDFHGPSESPYHGGVWRIRVELPDAYP 60
           MSSPSKRREMDLMKLMMSDYKVEMINDGMQEF+V+F GP +S Y GGVW+IRVELPDAYP
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYP 60

Query: 61  YKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPS+GF+ KIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFE FLPQLLLYPNPSDPL
Sbjct: 61  YKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPL 120

Query: 121 NGEAAALMMRDRVAYDQRVKEYRERYAKAEEIVAAPDQSSDEELSENE--SESSDEE--- 180
           NGEAAALMMRDR  Y+QRVKEY E+YAK        + SSD+E+SE+E  S+  DE+   
Sbjct: 121 NGEAAALMMRDRPTYEQRVKEYCEKYAKPR--ADTEEMSSDDEMSEDEYASDGDDEDDVA 180

Query: 181 VAGKAD 182
           +AGK D
Sbjct: 181 IAGKLD 184

[Close]

BLAST of CmaCh06G010740 vs. ExPASy Swiss-Prot
Match: P16577 (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum OX=4565 GN=UBC4 PE=1 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.8e-75
Identity = 142/183 (77.60%), Postives = 159/183 (86.89%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVDFHGPSESPYHGGVWRIRVELPDAYP 60
           MSSPSKRREMDLMKLMMSDYKV+MINDGM EF+V FHGP +S Y GGVW++RVEL +AYP
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVDMINDGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAYP 60

Query: 61  YKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPSIGF NKIYHPNVDEMSGSVCLDVINQTWSPMFDLVN+FEVFLPQLLLYPNPSDPL
Sbjct: 61  YKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPL 120

Query: 121 NGEAAALMMRDRVAYDQRVKEYRERYAKAEEI-VAAPDQSSDEELSENES-ESSDEEVAG 180
           NGEAA+LMMRD+ AY+ +VKEY ERYAK E+I     ++ SDEELS+ E  +S DE + G
Sbjct: 121 NGEAASLMMRDKNAYENKVKEYCERYAKPEDISPEEEEEESDEELSDAEGYDSGDEAIMG 180

Query: 181 KAD 182
            AD
Sbjct: 181 HAD 183

[Close]

BLAST of CmaCh06G010740 vs. ExPASy Swiss-Prot
Match: P42750 (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana OX=3702 GN=UBC6 PE=2 SV=2)

HSP 1 Score: 273.5 bits (698), Expect = 1.8e-72
Identity = 133/184 (72.28%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVDFHGPSESPYHGGVWRIRVELPDAYP 60
           M+SPSKRREMD+MKLMMSDYKV+ +ND +Q FYV FHGP++S Y GGVW+I+VELP+AYP
Sbjct: 1   MASPSKRREMDMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYP 60

Query: 61  YKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPS+GFVNKIYHPNVDE SG+VCLDVINQTWSPMFDL+NVFE FLPQLLLYPNPSDP 
Sbjct: 61  YKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPF 120

Query: 121 NGEAAALMMRDRVAYDQRVKEYRERYAKAEEIVAAPDQSSDEELSENESES---SDEEVA 180
           NGEAA+L+MRDR AY+ +VKEY E+YAK EEI++  D   D+ +SE+ S+S    D+E+ 
Sbjct: 121 NGEAASLLMRDRAAYELKVKEYCEKYAKPEEILS--DDDDDDSMSEDGSDSDDDDDDEIV 180

Query: 181 GKAD 182
           GKAD
Sbjct: 181 GKAD 182

[Close]

BLAST of CmaCh06G010740 vs. ExPASy Swiss-Prot
Match: Q9P7R4 (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ubc8 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 5.7e-63
Identity = 116/182 (63.74%), Postives = 147/182 (80.77%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVDFHGPSESPYHGGVWRIRVELPDAYP 60
           MSSP +R E D+MKL+MSDY+V ++ND MQEFYV FHGPSE+PY GG+W++ VELP  YP
Sbjct: 1   MSSPRRRIETDVMKLLMSDYEVTLVNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYP 60

Query: 61  YKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           +KSPSIGFVN+I+HPN+DE+SGSVCLDVINQTWSPMFD++N+FEVFLPQLL YPN SDPL
Sbjct: 61  WKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPL 120

Query: 121 NGEAAALMMRDRVAYDQRVKEYRERYAKAEEI-VAAPDQSSDEELSENESESSDEEVAGK 180
           NGEAAAL++R+   Y  +V++Y  RYA  E+  +   D S D+ +S  ++ES D E+AG 
Sbjct: 121 NGEAAALLLREPNTYYAKVRDYIARYANKEDADITLNDSSDDDTMSSIDTESGD-EIAGP 180

Query: 181 AD 182
            D
Sbjct: 181 MD 181

[Close]

BLAST of CmaCh06G010740 vs. TAIR 10
Match: AT5G41340.1 (ubiquitin conjugating enzyme 4 )

HSP 1 Score: 287.3 bits (734), Expect = 8.3e-78
Identity = 147/188 (78.19%), Postives = 162/188 (86.17%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVDFHGPSESPYHGGVWRIRVELPDAYP 60
           MSSPSKRREMD+MKLMMSDYKVE INDGMQEFYV+F+GP +S Y GGVW+IRVELPDAYP
Sbjct: 1   MSSPSKRREMDMMKLMMSDYKVETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYP 60

Query: 61  YKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPS+GF+ KIYHPNVDE+SGSVCLDVINQTWSPMFDLVNVFE FLPQLLLYPNPSDPL
Sbjct: 61  YKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPL 120

Query: 121 NGEAAALMMRDRVAYDQRVKEYRERYAKAEEIVAAPDQSSDEELSENESESSDEE----- 180
           NGEAAALMMRDR AY+QRVKEY E+YAK  E   + D+SSDEELSE E  S +E+     
Sbjct: 121 NGEAAALMMRDRPAYEQRVKEYCEKYAKPGE--GSEDKSSDEELSEEEYGSDNEDDDDDD 180

Query: 181 --VAGKAD 182
             +AGK D
Sbjct: 181 VAIAGKPD 186

[Close]

BLAST of CmaCh06G010740 vs. TAIR 10
Match: AT1G63800.1 (ubiquitin-conjugating enzyme 5 )

HSP 1 Score: 283.5 bits (724), Expect = 1.2e-76
Identity = 145/186 (77.96%), Postives = 160/186 (86.02%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVDFHGPSESPYHGGVWRIRVELPDAYP 60
           MSSPSKRREMDLMKLMMSDYKVEMINDGMQEF+V+F GP +S Y GGVW+IRVELPDAYP
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYP 60

Query: 61  YKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPS+GF+ KIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFE FLPQLLLYPNPSDPL
Sbjct: 61  YKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPL 120

Query: 121 NGEAAALMMRDRVAYDQRVKEYRERYAKAEEIVAAPDQSSDEELSENE--SESSDEE--- 180
           NGEAAALMMRDR  Y+QRVKEY E+YAK        + SSD+E+SE+E  S+  DE+   
Sbjct: 121 NGEAAALMMRDRPTYEQRVKEYCEKYAKPR--ADTEEMSSDDEMSEDEYASDGDDEDDVA 180

Query: 181 VAGKAD 182
           +AGK D
Sbjct: 181 IAGKLD 184

[Close]

BLAST of CmaCh06G010740 vs. TAIR 10
Match: AT2G46030.1 (ubiquitin-conjugating enzyme 6 )

HSP 1 Score: 273.5 bits (698), Expect = 1.2e-73
Identity = 133/184 (72.28%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVDFHGPSESPYHGGVWRIRVELPDAYP 60
           M+SPSKRREMD+MKLMMSDYKV+ +ND +Q FYV FHGP++S Y GGVW+I+VELP+AYP
Sbjct: 1   MASPSKRREMDMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYP 60

Query: 61  YKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPS+GFVNKIYHPNVDE SG+VCLDVINQTWSPMFDL+NVFE FLPQLLLYPNPSDP 
Sbjct: 61  YKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPF 120

Query: 121 NGEAAALMMRDRVAYDQRVKEYRERYAKAEEIVAAPDQSSDEELSENESES---SDEEVA 180
           NGEAA+L+MRDR AY+ +VKEY E+YAK EEI++  D   D+ +SE+ S+S    D+E+ 
Sbjct: 121 NGEAASLLMRDRAAYELKVKEYCEKYAKPEEILS--DDDDDDSMSEDGSDSDDDDDDEIV 180

Query: 181 GKAD 182
           GKAD
Sbjct: 181 GKAD 182

[Close]

BLAST of CmaCh06G010740 vs. TAIR 10
Match: AT3G08690.1 (ubiquitin-conjugating enzyme 11 )

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-21
Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = 0


Query: 11  DLMKLMMSDYKVEMINDGMQEFYVDFHGPSESPYHGGVWRIRVELPDAYPYKSPSIGFVN 70
           DL K   S+     + + M  +     GP ESPY GGV+ + +  P  YP+K P + F  
Sbjct: 12  DLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKT 71

Query: 71  KIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMR 130
           K+YHPN++  +GS+CLD++ + WSP   +  V  + +  LL  PNP DPL  E A +   
Sbjct: 72  KVYHPNINS-NGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKT 131

Query: 131 DRVAYDQRVKEYRERYA 148
           DR  Y+   + + ++YA
Sbjct: 132 DRSKYESTARSWTQKYA 146

[Close]

BLAST of CmaCh06G010740 vs. TAIR 10
Match: AT3G08690.2 (ubiquitin-conjugating enzyme 11 )

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-21
Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = 0


Query: 11  DLMKLMMSDYKVEMINDGMQEFYVDFHGPSESPYHGGVWRIRVELPDAYPYKSPSIGFVN 70
           DL K   S+     + + M  +     GP ESPY GGV+ + +  P  YP+K P + F  
Sbjct: 12  DLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKT 71

Query: 71  KIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMR 130
           K+YHPN++  +GS+CLD++ + WSP   +  V  + +  LL  PNP DPL  E A +   
Sbjct: 72  KVYHPNINS-NGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKT 131

Query: 131 DRVAYDQRVKEYRERYA 148
           DR  Y+   + + ++YA
Sbjct: 132 DRSKYESTARSWTQKYA 146

The following BLAST results are available for this feature:

BLAST of CmaCh06G010740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42748	1.2e-76	78.19	Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana OX=3702 GN=UBC4 PE=2 S...	[more]
P42749	1.7e-75	77.96	Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 S...	[more]
P16577	3.8e-75	77.60	Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum OX=4565 GN=UBC4 PE=1...	[more]
P42750	1.8e-72	72.28	Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana OX=3702 GN=UBC6 PE=2 S...	[more]
Q9P7R4	5.7e-63	63.74	Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of CmaCh06G010740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41340.1	8.3e-78	78.19	ubiquitin conjugating enzyme 4	[more]
AT1G63800.1	1.2e-76	77.96	ubiquitin-conjugating enzyme 5	[more]
AT2G46030.1	1.2e-73	72.28	ubiquitin-conjugating enzyme 6	[more]
AT3G08690.1	1.1e-21	35.77	ubiquitin-conjugating enzyme 11	[more]
AT3G08690.2	1.1e-21	35.77	ubiquitin-conjugating enzyme 11	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 132..152
None	No IPR available	SMART	SM00212	ubc_7	coord: 4..148 e-value: 2.0E-50 score: 183.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..182
None	No IPR available	PANTHER	PTHR24068	UBIQUITIN-CONJUGATING ENZYME E2	coord: 3..181
None	No IPR available	PANTHER	PTHR24068:SF321	UBIQUITIN-CONJUGATING ENZYME E2-23 KDA	coord: 3..181
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10	Ubiquitin Conjugating Enzyme	coord: 1..160 e-value: 2.4E-49 score: 169.0
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 4..148
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 10..142 e-value: 2.3E-38 score: 131.0
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBC_2	coord: 1..148 score: 41.546421
IPR000608	Ubiquitin-conjugating enzyme E2	CDD	cd00195	UBCc	coord: 7..142 e-value: 4.40553E-52 score: 161.601
IPR023313	Ubiquitin-conjugating enzyme, active site	PROSITE	PS00183	UBC_1	coord: 73..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G010740.1	CmaCh06G010740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0061631	ubiquitin conjugating enzyme activity