CmaCh06G010620 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G010620
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Mediator of RNA polymerase II transcription subunit 2-like
Location	Cma_Chr06: 7135600 .. 7137295 (-)
RNA-Seq Expression	CmaCh06G010620
Synteny	CmaCh06G010620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAAAAAACAGCATGGGCCAACCCGGTTTGGTATAAGAATACCTCAGTGCAGTTGCTGAGTAAATATCGGGTTAGGGTTTAAGAGAACGTTGACCTGCGGCAAATCGAGGAGATTTCCGGCGGCCGGGCGCAACAAAATGTCGAAGAAAAATAATCTTTCGCGCAGGAAGAATCAACATGAATTCGACCTTCGAAGTAACTTTTAATGTTAAATTAATTGCTCAAATCATTTGTTTGTTCCAATTGATTCACTTTTTCGTGGTTCTTATGCTAATGTTTTTCCACGGGCGGATTGATTAGGGGAGAAACAAGAAAAAGAAAAGGCCGCGAAAAAGCTCCAAGCAAAGAAGAATAAGATGAAGGTATCGCTCTCTCTTTATCTCTGTATTGAATCGAGAAAAGTGGAATTTTCTGTTTTGCTGATTTAAAAAAGAAATTGAGAGTTATGGAGAGAGATGGATTATTGTCTCTGTTTTGATTTTCACTTGGTAATTTGGAAATTTGATCGTACGAGTAATGTTCTAGTTTTCACACATCATGATCACAAAACTCTCGAGAGATGCGTTCGTTAGGATGAATAATGGAGAGAAAAGTATAATGGCCAGTGACTGTGAGGCCCCAGTAGACTGGAGAGGACACCAAAGGCCTCTGCTCTTCCATCTCTTGGATAGATAGAGAGGGAAGGCGGAACTTGTTTAGGTTTTTCCGGTGTCCAAGCTTGCCTCACAGATATATTAGAAATGATACCTTGGGGCGGAGCTAAAGCTAAGCAAAGGCCTCTACTCTTCCACCCCTTGGATAGATGGAGAGGGAAGGCAGAACTTGTTTATGTTTTTTCAGTTTTCGAGCTTGCCCCACAGATATATTAGAAATGATACCTTGGGGTGGAGCTAAAGCTAAGCAAATAGTTTCTGCTCCAAGAATAGATCACTCTGTTGGTGGTAGTAAGAGATATGAATCTGTCTTCCCACTGTGTGATTTTTTGAGCAATTGGCCAACTGTGGACGAATATCAAATTTCGTTTGCCTTTTCTGAACACGTCCGTGTATGTTAATACCATTCGAAAGTCTCATTGTTTTCGTTTAATTATGTGCATAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGCTGGGTTTCAAGTTGGGAAGAAAAAAGTGAAGACTAAGTTGACTGCAGCGGCAAAAGCAAAAGCAGCCCAGGCAATGGAACTTGATAAATGAGGTTTGATGTGTATATTTTTAGGGACCTGGATTGATGAATGGATATATTTATTTCTTGTGATCTGTAACAGAAAGAAAGTTCTTAATTTCTAGTAAACTTTGATCTTCCACTTGCCTTCTCTCTTGATTTCTGATCTCTTGATTGCCCGAATTCGAATCTGATAGATTGAGGATGTTTATATTGATATACTATGTGGAGTAATTTCATATTTGAAATGGGTTATGAAGCCACCCCTTTGTTCTTGTAAGTTGGATGTTTCAATCTTGAAAATCTTCCCTTGAACGCTCAATTTTTGTTCGGCCAGTTTCTCCTTGTTGAAAAATCCATATTCCTTGGAATTGATTGTTGCTTCATCCTCCGGTTAACTTGATGAACTTGATGATTTGATGATTTGAACTAAGAGACATCAATCATACAATATATTTCAATGAAGATGCGAAGAAAATGTTGTTAAAATTATCAAAAGCGTT

mRNA sequence

AGGAAAAAACAGCATGGGCCAACCCGGTTTGGTATAAGAATACCTCAGTGCAGTTGCTGAGTAAATATCGGGTTAGGGTTTAAGAGAACGTTGACCTGCGGCAAATCGAGGAGATTTCCGGCGGCCGGGCGCAACAAAATGTCGAAGAAAAATAATCTTTCGCGCAGGAAGAATCAACATGAATTCGACCTTCGAAGGGAGAAACAAGAAAAAGAAAAGGCCGCGAAAAAGCTCCAAGCAAAGAAGAATAAGATGAAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGCTGGGTTTCAAGTTGGGAAGAAAAAAGTGAAGACTAAGTTGACTGCAGCGGCAAAAGCAAAAGCAGCCCAGGCAATGGAACTTGATAAATGAGGTTTGATGTGTATATTTTTAGGGACCTGGATTGATGAATGGATATATTTATTTCTTGTGATCTGTAACAGAAAGAAAGTTCTTAATTTCTAGTAAACTTTGATCTTCCACTTGCCTTCTCTCTTGATTTCTGATCTCTTGATTGCCCGAATTCGAATCTGATAGATTGAGGATGTTTATATTGATATACTATGTGGAGTAATTTCATATTTGAAATGGGTTATGAAGCCACCCCTTTGTTCTTGTAAGTTGGATGTTTCAATCTTGAAAATCTTCCCTTGAACGCTCAATTTTTGTTCGGCCAGTTTCTCCTTGTTGAAAAATCCATATTCCTTGGAATTGATTGTTGCTTCATCCTCCGGTTAACTTGATGAACTTGATGATTTGATGATTTGAACTAAGAGACATCAATCATACAATATATTTCAATGAAGATGCGAAGAAAATGTTGTTAAAATTATCAAAAGCGTT

Coding sequence (CDS)

ATGTCGAAGAAAAATAATCTTTCGCGCAGGAAGAATCAACATGAATTCGACCTTCGAAGGGAGAAACAAGAAAAAGAAAAGGCCGCGAAAAAGCTCCAAGCAAAGAAGAATAAGATGAAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGCTGGGTTTCAAGTTGGGAAGAAAAAAGTGAAGACTAAGTTGACTGCAGCGGCAAAAGCAAAAGCAGCCCAGGCAATGGAACTTGATAAATGA

Protein sequence

MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKKVKTKLTAAAKAKAAQAMELDK

Homology

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BLAST of CmaCh06G010620 vs. TAIR 10
Match: AT2G45860.1 (unknown protein; Has 32 Blast hits to 32 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-20
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60
          MSKKNNL++RK QHE++L++EK+ ++K  KKL A KNKMKVDGSGKKKKG  GF VGKKK
Sbjct: 1  MSKKNNLAKRKKQHEYNLQKEKELQDKKIKKLHANKNKMKVDGSGKKKKG--GFSVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELD 81
          +KTKLT  AKAKAAQAMELD
Sbjct: 61 LKTKLTPTAKAKAAQAMELD 78

The following BLAST results are available for this feature:

BLAST of CmaCh06G010620 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G010620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45860.1	2.1e-20	73.75	unknown protein; Has 32 Blast hits to 32 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	PANTHER	PTHR36745	OS02G0824400 PROTEIN	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G010620.1	CmaCh06G010620.1	mRNA