CmaCh06G009490 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G009490
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	60S acidic ribosomal protein P1-like
Location	Cma_Chr06: 6406702 .. 6408027 (+)
RNA-Seq Expression	CmaCh06G009490
Synteny	CmaCh06G009490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACGCTTTCGTGTTGCGCAGCGAAGAACAGACTGCTTAGAGCCTCGCCTTCGCTCATACTTCTGGTTGGAAATCTCTCTCCTTCAATCCTCAATTATTTTTCCTGATTGATATTTCTGTAATGCGTTCAAATTCTAATGCTTCAGGAATTGTGTTCTTTTTCTGATTTCTTCTTCTGTAATTTTGATCGCTTTTGAACGTGCAGTGAAAATGTCGGTCGGTGAAATCGCTTGCTCTTATGCTGCTCTCATCCTCTACGACGATAACATCCCCGTCACCGTATGTTTCTCTTCAATCATGACATCCTCCTTCAATATTTATGTTCTTTATCAGTACTTACCTTTCGGGATCTCGTTTACCGATTTCTAAGTAATTAATAGGAAGATTATCATGTGTTATTCAAAAGGATTATTGTAAATGTTAGGAATGTTATCCTTTTTCAAACTGTTTCTTGGTTTTAATTTCATATATATATGTATAGAACGACGCTTACAATCTAGATATTGTTTTTCTGTTATTACAAATTTTCTTGTATGTTTATGAAATTTGTTCCGATGTGTGACGATTGTTTTTTGTTATGAATTTCTGTGATAGCGTTTGTTTTATCATCTGTATGGAAATGAGATCGTAATGTGTTTCTTTTAACAGGCAGAGAAGCTTGCCACGCTTGTAAAAGCTGCTGGAGTGGATGCGGAGTCCTACTGGTTCAGCCTTTTTGCTAAGCTTGCCGAGAAGCGTAACATTGGGGATTTGATCATGAACGTTGGGGCTGGCGGAGGTGCCGCAGTCGCTGCTGCTGTTCCAGCTGGTGGAGCCGGTGGGGCTGCTGCCGCAGCTGCACCTCCTCCGGAAGAGAAGAAGGTATGGCGATAGAGCAATTTCAATTCTGAGAATAATACTGTTATCCGTTCATGTACATCGTCATGACATGGGATTGTTTTTGTTACTTGCAGGAAGAACCAAAGGAGGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAGATCAAACATGGCTTTGCATATTTTGAACTAGGTTGACTATCTTTTGAATGCCAGAGGGCTTTCTTGTTACTTTTCTGATTTGTAATTTTGGACGTCCGTGACAAAAATTTGCCTGAAGTTTTGTTTTGAATTTGAATTTGATCGCATCTTTTTGGTTTATCTATATCTTATGTCCTCTCAGTAGCTAGGCATATATGTTTTGGATGGTTGTTGCTTCTATGCGTTTCTGAACCTCACTTCCAGTTGCCAAATTCTTCTTCAATTGGGAGGAATTGAGCTTATGATAAGGAACAATTTCAACTTTTTAGAATGAATCTGGC

mRNA sequence

AACGCTTTCGTGTTGCGCAGCGAAGAACAGACTGCTTAGAGCCTCGCCTTCGCTCATACTTCTGTGAAAATGTCGGTCGGTGAAATCGCTTGCTCTTATGCTGCTCTCATCCTCTACGACGATAACATCCCCGTCACCGCAGAGAAGCTTGCCACGCTTGTAAAAGCTGCTGGAGTGGATGCGGAGTCCTACTGGTTCAGCCTTTTTGCTAAGCTTGCCGAGAAGCGTAACATTGGGGATTTGATCATGAACGTTGGGGCTGGCGGAGGTGCCGCAGTCGCTGCTGCTGTTCCAGCTGGTGGAGCCGGTGGGGCTGCTGCCGCAGCTGCACCTCCTCCGGAAGAGAAGAAGGAAGAACCAAAGGAGGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAGATCAAACATGGCTTTGCATATTTTGAACTAGGTTGACTATCTTTTGAATGCCAGAGGGCTTTCTTGTTACTTTTCTGATTTGTAATTTTGGACGTCCGTGACAAAAATTTGCCTGAAGTTTTGTTTTGAATTTGAATTTGATCGCATCTTTTTGGTTTATCTATATCTTATGTCCTCTCAGTAGCTAGGCATATATGTTTTGGATGGTTGTTGCTTCTATGCGTTTCTGAACCTCACTTCCAGTTGCCAAATTCTTCTTCAATTGGGAGGAATTGAGCTTATGATAAGGAACAATTTCAACTTTTTAGAATGAATCTGGC

Coding sequence (CDS)

ATGTCGGTCGGTGAAATCGCTTGCTCTTATGCTGCTCTCATCCTCTACGACGATAACATCCCCGTCACCGCAGAGAAGCTTGCCACGCTTGTAAAAGCTGCTGGAGTGGATGCGGAGTCCTACTGGTTCAGCCTTTTTGCTAAGCTTGCCGAGAAGCGTAACATTGGGGATTTGATCATGAACGTTGGGGCTGGCGGAGGTGCCGCAGTCGCTGCTGCTGTTCCAGCTGGTGGAGCCGGTGGGGCTGCTGCCGCAGCTGCACCTCCTCCGGAAGAGAAGAAGGAAGAACCAAAGGAGGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAG

Protein sequence

MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD

Homology

[Close]

BLAST of CmaCh06G009490 vs. ExPASy Swiss-Prot
Match: P52855 (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.9e-33
Identity = 82/112 (73.21%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60
           M+ GE+AC YAALIL DD I +TAEK+AT+VKAA +  ESYW +LFAKL EKRN+ DLI+
Sbjct: 1   MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 61  NVGAGGGAA-VAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           +VG+GGGAA VAAA P   AGGAAAAAAP  EEKKEE KEESDDDMGFSLFD
Sbjct: 61  SVGSGGGAAPVAAAAP---AGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109

[Close]

BLAST of CmaCh06G009490 vs. ExPASy Swiss-Prot
Match: O23095 (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 5.9e-31
Identity = 77/113 (68.14%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 2   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIMN 61
           +VGE+ACSYA +IL D+ I +T++K+ATLVKAAGV+ ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGA---GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           VGA   GGGA V+AA PA  A G AAAAAP  EEKK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGGAPVSAAAPA--AAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of CmaCh06G009490 vs. ExPASy Swiss-Prot
Match: Q8LEQ0 (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 7.8e-31
Identity = 78/112 (69.64%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 2   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIMN 61
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           VGA  GGGA VAAA PA G GGAAAAA    E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAG-GGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of CmaCh06G009490 vs. ExPASy Swiss-Prot
Match: Q8LCW9 (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 SV=2)

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-30
Identity = 77/112 (68.75%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 2   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIMN 61
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           VGA  GGGA VAAA PA G G AAA AA   E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAGGGAAAAPAA--EEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of CmaCh06G009490 vs. ExPASy Swiss-Prot
Match: P29763 (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-26
Identity = 69/111 (62.16%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60
           MS  E+AC+YAALIL+DD + +TA+ + T+ KAAGV+ E YW +LFAKL  K+++ DLI 
Sbjct: 1   MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLIT 60

Query: 61  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           NVGAGGGAA AAA PA  AGGA AA A P +E+K+EP EE  +DMGFSLFD
Sbjct: 61  NVGAGGGAAPAAAAPA--AGGAPAAGAAPKKEEKKEPSEE--EDMGFSLFD 107

[Close]

BLAST of CmaCh06G009490 vs. ExPASy TrEMBL
Match: A0A6J1ICK4 (60S acidic ribosomal protein P1-like OS=Cucurbita maxima OX=3661 GN=LOC111474378 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.0e-49
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60
           MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM
Sbjct: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60

Query: 61  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of CmaCh06G009490 vs. ExPASy TrEMBL
Match: A0A6J1GHG1 (60S acidic ribosomal protein P1-like OS=Cucurbita moschata OX=3662 GN=LOC111454200 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.9e-49
Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60
           MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV+AESYWFSLFAKLAEKRNIGDLIM
Sbjct: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 60

Query: 61  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of CmaCh06G009490 vs. ExPASy TrEMBL
Match: A0A5D3DB57 (60S acidic ribosomal protein P1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00330 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.1e-43
Identity = 102/113 (90.27%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-DAESYWFSLFAKLAEKRNIGDLI 60
           MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V D ESYW+SLFAKLAEKRNIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 61  MNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           +NVGAGGGAAVAAAVPAGG A G AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAVPAGGAAAGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of CmaCh06G009490 vs. ExPASy TrEMBL
Match: A0A1S3AUG9 (60S acidic ribosomal protein P1-like OS=Cucumis melo OX=3656 GN=LOC103483111 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.1e-43
Identity = 102/113 (90.27%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-DAESYWFSLFAKLAEKRNIGDLI 60
           MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V D ESYW+SLFAKLAEKRNIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 61  MNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           +NVGAGGGAAVAAAVPAGG A G AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAVPAGGAAAGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of CmaCh06G009490 vs. ExPASy TrEMBL
Match: A0A0A0L5M7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116860 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.6e-42
Identity = 100/113 (88.50%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-DAESYWFSLFAKLAEKRNIGDLI 60
           MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V D ESYW+ LFAKLAEKR+IGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60

Query: 61  MNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           +NVGAGGGAAVAAA PAGG AGG AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of CmaCh06G009490 vs. NCBI nr
Match: XP_022974253.1 (60S acidic ribosomal protein P1-like [Cucurbita maxima] >XP_022975257.1 60S acidic ribosomal protein P1-like [Cucurbita maxima] >XP_023538866.1 60S acidic ribosomal protein P1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.7 bits (522), Expect = 2.1e-49
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60
           MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM
Sbjct: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60

Query: 61  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of CmaCh06G009490 vs. NCBI nr
Match: KAG6597015.1 (60S acidic ribosomal protein P1-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204.1 bits (518), Expect = 6.1e-49
Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60
           MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV+AESYWFSLFAKLAEKRNIGDLIM
Sbjct: 18  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 77

Query: 61  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 78  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 128

[Close]

BLAST of CmaCh06G009490 vs. NCBI nr
Match: XP_022951343.1 (60S acidic ribosomal protein P1-like [Cucurbita moschata] >KAG7028491.1 60S acidic ribosomal protein P1-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.1 bits (518), Expect = 6.1e-49
Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60
           MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV+AESYWFSLFAKLAEKRNIGDLIM
Sbjct: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 60

Query: 61  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of CmaCh06G009490 vs. NCBI nr
Match: XP_038883955.1 (60S acidic ribosomal protein P1-like [Benincasa hispida])

HSP 1 Score: 184.1 bits (466), Expect = 6.5e-43
Identity = 102/113 (90.27%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-DAESYWFSLFAKLAEKRNIGDLI 60
           MS GEIACSYAALILYDDNIP+TAEK+AT+VKAA V D ESYWF LFAKLAEKRNIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATIVKAANVPDVESYWFGLFAKLAEKRNIGDLI 60

Query: 61  MNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           +NVGAGGGAAVAAAVPA G AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAVPASGVAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of CmaCh06G009490 vs. NCBI nr
Match: XP_008437779.1 (PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo] >KAA0048820.1 60S acidic ribosomal protein P1-like [Cucumis melo var. makuwa] >TYK20773.1 60S acidic ribosomal protein P1-like [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 8.5e-43
Identity = 102/113 (90.27%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-DAESYWFSLFAKLAEKRNIGDLI 60
           MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V D ESYW+SLFAKLAEKRNIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 61  MNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           +NVGAGGGAAVAAAVPAGG A G AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAVPAGGAAAGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of CmaCh06G009490 vs. TAIR 10
Match: AT4G00810.1 (60S acidic ribosomal protein family )

HSP 1 Score: 134.8 bits (338), Expect = 4.2e-32
Identity = 77/113 (68.14%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 2   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIMN 61
           +VGE+ACSYA +IL D+ I +T++K+ATLVKAAGV+ ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGA---GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           VGA   GGGA V+AA PA  A G AAAAAP  EEKK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGGAPVSAAAPA--AAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of CmaCh06G009490 vs. TAIR 10
Match: AT4G00810.2 (60S acidic ribosomal protein family )

HSP 1 Score: 134.8 bits (338), Expect = 4.2e-32
Identity = 77/113 (68.14%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 2   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIMN 61
           +VGE+ACSYA +IL D+ I +T++K+ATLVKAAGV+ ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGA---GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           VGA   GGGA V+AA PA  A G AAAAAP  EEKK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGGAPVSAAAPA--AAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of CmaCh06G009490 vs. TAIR 10
Match: AT5G47700.1 (60S acidic ribosomal protein family )

HSP 1 Score: 134.4 bits (337), Expect = 5.5e-32
Identity = 78/112 (69.64%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 2   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIMN 61
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           VGA  GGGA VAAA PA G GGAAAAA    E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAG-GGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of CmaCh06G009490 vs. TAIR 10
Match: AT5G47700.2 (60S acidic ribosomal protein family )

HSP 1 Score: 134.4 bits (337), Expect = 5.5e-32
Identity = 78/112 (69.64%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 2   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIMN 61
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           VGA  GGGA VAAA PA G GGAAAAA    E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAG-GGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of CmaCh06G009490 vs. TAIR 10
Match: AT1G01100.1 (60S acidic ribosomal protein family )

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-31
Identity = 77/112 (68.75%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 2   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIMN 61
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           VGA  GGGA VAAA PA G G AAA AA   E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAGGGAAAAPAA--EEKKKDEPAEESDGDLGFGLFD 112

The following BLAST results are available for this feature:

BLAST of CmaCh06G009490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52855	4.9e-33	73.21	60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1	[more]
O23095	5.9e-31	68.14	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 ...	[more]
Q8LEQ0	7.8e-31	69.64	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 ...	[more]
Q8LCW9	2.3e-30	68.75	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 ...	[more]
P29763	1.2e-26	62.16	60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1	[more]

BLAST of CmaCh06G009490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ICK4	1.0e-49	100.00	60S acidic ribosomal protein P1-like OS=Cucurbita maxima OX=3661 GN=LOC111474378...	[more]
A0A6J1GHG1	2.9e-49	99.10	60S acidic ribosomal protein P1-like OS=Cucurbita moschata OX=3662 GN=LOC1114542...	[more]
A0A5D3DB57	4.1e-43	90.27	60S acidic ribosomal protein P1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3AUG9	4.1e-43	90.27	60S acidic ribosomal protein P1-like OS=Cucumis melo OX=3656 GN=LOC103483111 PE=...	[more]
A0A0A0L5M7	4.6e-42	88.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116860 PE=3 SV=1	[more]

BLAST of CmaCh06G009490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974253.1	2.1e-49	100.00	60S acidic ribosomal protein P1-like [Cucurbita maxima] >XP_022975257.1 60S acid...	[more]
KAG6597015.1	6.1e-49	99.10	60S acidic ribosomal protein P1-2, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022951343.1	6.1e-49	99.10	60S acidic ribosomal protein P1-like [Cucurbita moschata] >KAG7028491.1 60S acid...	[more]
XP_038883955.1	6.5e-43	90.27	60S acidic ribosomal protein P1-like [Benincasa hispida]	[more]
XP_008437779.1	8.5e-43	90.27	PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo] >KAA0048820.1 60S...	[more]

BLAST of CmaCh06G009490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00810.1	4.2e-32	68.14	60S acidic ribosomal protein family	[more]
AT4G00810.2	4.2e-32	68.14	60S acidic ribosomal protein family	[more]
AT5G47700.1	5.5e-32	69.64	60S acidic ribosomal protein family	[more]
AT5G47700.2	5.5e-32	69.64	60S acidic ribosomal protein family	[more]
AT1G01100.1	1.6e-31	68.75	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..63 e-value: 5.7E-30 score: 104.9
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 22..110 e-value: 5.5E-26 score: 91.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..105
None	No IPR available	PANTHER	PTHR45696:SF22	60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED	coord: 1..111
None	No IPR available	PANTHER	PTHR45696	60S ACIDIC RIBOSOMAL PROTEIN P1	coord: 1..111
None	No IPR available	CDD	cd05831	Ribosomal_P1	coord: 5..61 e-value: 2.18606E-25 score: 89.6883
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 6..111 score: 14.836512

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G009490.1	CmaCh06G009490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032147	activation of protein kinase activity
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0030295	protein kinase activator activity
molecular_function	GO:0043021	ribonucleoprotein complex binding
molecular_function	GO:0003735	structural constituent of ribosome