CmaCh06G009020 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G009020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	LOB domain-containing protein
Location	Cma_Chr06: 5807568 .. 5808753 (-)
RNA-Seq Expression	CmaCh06G009020
Synteny	CmaCh06G009020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGATCACCAATTCCCTCGCCGGAAAGACCTTGGCAAACGTACCTCCTCCACTACCAACACCGACACCAGCTCCGCCACCCCTACCGACATCGGGGCTACCACCGCTCCCTGTGGTGCCTGCAAGTTTCTCCGTAGAAAATGTGTCAATGGCTGCATCTTTGCACCGCATTTTGCCTCCGATCAGGGCGTTGCTCGCTTTGCCGCCGTGCATAAGGTGTTTGGAGCGAGTAATGTATCGAAGCTGCTGCTGCATATTCCGCTCAGTCGCCGCCGTGCATAAGGTGTTTGGAGCGAGTAATGTATCGAAGCTGCTGCTGCATATTCCGCTCAGTCGCCGAAACGACGCCGTCGTTACCATTTCTTATGAAGCTCAGGCTAGACTCTCCGACCCTGTCTATGGCTGTGTCTCAACTGTACTTGCCCTTCAACAACAGGTCTTCTTTTTCCTGTGATTTTTTAAACTAACAATATTTTATAACATATTATTTATTGATGCATATTTTTCAAGACAAATTATAGATAAGTTCGTAAATTTTGTTGTTGCTTCCTTACCAATAACGAAGATATTTACGCAAAATTTTAATAAAATTATAATGATGCTAAATAAAACCAATTTTAAATTATAATTTATCCATTTCTAAATTTTGAAGGAAAATAATATTTATAAATTTTTATACTCCTTTAAACACATTAATTTAGCTGGCTAAATTTAAATTTTTTAAAAATATTTAGAAAAATTAAAATTGAAATATATTTATCAATTTCAGGTGGCATCTCTGCAAGCGGAGCTTGCGGCGGTTCAAAGTCAATTAATAAGCAGCAGGTTGGCATTTGCAAGTGCAATTCAAAGCGGAGCTTGCGGCGGTTCAAAGTCAATTAATAAGCAGCAGGTTGGCATTTGCAAGTGCAATTCAGAACTCACAGCCACCGCAAGTGGGAGTGCAGCTGCAGCCCGCATACTCCAACAACTCCTCCATCTCTGTCTCAGCCTCCACCTCCGCTCATAATGCAATCAATTTGAGCAGTTTTGCTTCCAATTACGACCTTCCGACGGAGACTGCCCCATCTCCCCATCACTTAGAGCCTCTCCATCTCCCCCGCCGATCCATCGAAGACGAGGAAGATGAGGAAAATAGCCAGCTCCCCACCATCTTTGCCGACGACCTACTCCGCCCACGATGA

mRNA sequence

ATGCTGATCACCAATTCCCTCGCCGGAAAGACCTTGGCAAACGTACCTCCTCCACTACCAACACCGACACCAGCTCCGCCACCCCTACCGACATCGGGGCTACCACCGCTCCCTGTGGTGCCTGCAAGTTTCTCCGTAGAAAATGTGTCAATGGCTGCATCTTTGCACCGCATTTTGCCTCCGATCAGGGCGTTGCTCGCTTTGCCGCCGTGCATAAGGTGTTTGGAGCGAGTAATGTATCGAAGCTGCTGCTGCATATTCCGCTCAGTCGCCGCCGTGCATAAGGTGTTTGGAGCGAGTAATGTATCGAAGCTGCTGCTGCATATTCCGCTCAGTCGCCGAAACGACGCCGTCGTTACCATTTCTTATGAAGCTCAGGCTAGACTCTCCGACCCTGTCTATGGCTGTGTCTCAACTGTACTTGCCCTTCAACAACAGGTGGCATCTCTGCAAGCGGAGCTTGCGGCGGTTCAAAGTCAATTAATAAGCAGCAGCAGGTTGGCATTTGCAAGTGCAATTCAGAACTCACAGCCACCGCAAGTGGGAGTGCAGCTGCAGCCCGCATACTCCAACAACTCCTCCATCTCTGTCTCAGCCTCCACCTCCGCTCATAATGCAATCAATTTGAGCAGTTTTGCTTCCAATTACGACCTTCCGACGGAGACTGCCCCATCTCCCCATCACTTAGAGCCTCTCCATCTCCCCCGCCGATCCATCGAAGACGAGGAAGATGAGGAAAATAGCCAGCTCCCCACCATCTTTGCCGACGACCTACTCCGCCCACGATGA

Coding sequence (CDS)

ATGCTGATCACCAATTCCCTCGCCGGAAAGACCTTGGCAAACGTACCTCCTCCACTACCAACACCGACACCAGCTCCGCCACCCCTACCGACATCGGGGCTACCACCGCTCCCTGTGGTGCCTGCAAGTTTCTCCGTAGAAAATGTGTCAATGGCTGCATCTTTGCACCGCATTTTGCCTCCGATCAGGGCGTTGCTCGCTTTGCCGCCGTGCATAAGGTGTTTGGAGCGAGTAATGTATCGAAGCTGCTGCTGCATATTCCGCTCAGTCGCCGCCGTGCATAAGGTGTTTGGAGCGAGTAATGTATCGAAGCTGCTGCTGCATATTCCGCTCAGTCGCCGAAACGACGCCGTCGTTACCATTTCTTATGAAGCTCAGGCTAGACTCTCCGACCCTGTCTATGGCTGTGTCTCAACTGTACTTGCCCTTCAACAACAGGTGGCATCTCTGCAAGCGGAGCTTGCGGCGGTTCAAAGTCAATTAATAAGCAGCAGCAGGTTGGCATTTGCAAGTGCAATTCAGAACTCACAGCCACCGCAAGTGGGAGTGCAGCTGCAGCCCGCATACTCCAACAACTCCTCCATCTCTGTCTCAGCCTCCACCTCCGCTCATAATGCAATCAATTTGAGCAGTTTTGCTTCCAATTACGACCTTCCGACGGAGACTGCCCCATCTCCCCATCACTTAGAGCCTCTCCATCTCCCCCGCCGATCCATCGAAGACGAGGAAGATGAGGAAAATAGCCAGCTCCCCACCATCTTTGCCGACGACCTACTCCGCCCACGATGA

Protein sequence

MLITNSLAGKTLANVPPPLPTPTPAPPPLPTSGLPPLPVVPASFSVENVSMAASLHRILPPIRALLALPPCIRCLERVMYRSCCCIFRSVAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRPR

Homology

[Close]

BLAST of CmaCh06G009020 vs. ExPASy Swiss-Prot
Match: Q9SRV3 (LOB domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=LBD20 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.2e-35
Identity = 107/200 (53.50%), Postives = 131/200 (65.50%), Query Frame = 0


Query: 70  PCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRRNDA 129
           PC  C  + + R C   CIF             AAVHKVFGASNVSKLL HIP++RR+DA
Sbjct: 51  PCGAC--KFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIPVNRRHDA 110

Query: 130 VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSSRLAFASAIQ--- 189
           VVTISYEAQARLSDPVYGCVST+LALQQQVASLQAEL+ VQSQLI +SR+A A+ +Q   
Sbjct: 111 VVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQSQLI-NSRVAMANVMQQQT 170

Query: 190 --NSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFAS--NYDLPTETAPSPHHLE 249
               Q  Q+ V  QP YSNNSS S + + +A N+  +++ A+  +YD+   T    H L+
Sbjct: 171 HHQQQQQQLVVMQQPEYSNNSSASTTLAGAAMNSFTMTADAAAVSYDVMAPT-NLEHSLQ 230

[Close]

BLAST of CmaCh06G009020 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 3.5e-21
Identity = 61/106 (57.55%), Postives = 74/106 (69.81%), Query Frame = 0


Query: 70  PCIRCLERVMYRSCC--CIFRS----------VAAVHKVFGASNVSKLLLHIPLSRRNDA 129
           PC  C  + + R C   CIF             AAVHKVFGASNVSKLLLHIP+ RR+DA
Sbjct: 37  PCGAC--KFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDA 96

Query: 130 VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLIS 164
           VVTI YEAQAR+ DP+YGCV+ + ALQQQV +LQAE++ +Q+ L S
Sbjct: 97  VVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLAS 140

[Close]

BLAST of CmaCh06G009020 vs. ExPASy Swiss-Prot
Match: O81322 (LOB domain-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=LBD31 PE=2 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 3.2e-19
Identity = 72/183 (39.34%), Postives = 101/183 (55.19%), Query Frame = 0


Query: 70  PCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRRNDA 129
           PC  C  + + R C   C+F              AVHKVFGASN SKLL+ IP SRR DA
Sbjct: 11  PCGAC--KFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPASRRLDA 70

Query: 130 VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSSRLAFASAIQNSQ 189
           VVT++YEA ARL DPVYGCV  + ALQ QV +LQAELA VQ+QL         S +Q   
Sbjct: 71  VVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQL---------STLQGLP 130

Query: 190 PPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRR 241
           PP      +   +++S++ + +S  + +  N+SS +S+    ++        E + +P  
Sbjct: 131 PPNSQNNSRTEAASSSNVPLISSVDSKD--NMSSSSSHIPCMSQQQEQEQPKEAIEVPTE 180

[Close]

BLAST of CmaCh06G009020 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.5e-19
Identity = 58/118 (49.15%), Postives = 73/118 (61.86%), Query Frame = 0


Query: 70  PCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRRNDA 129
           PC  C  + + R C   C+F             AA+HKVFGASN SKLL H+P+S R +A
Sbjct: 11  PCGAC--KFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEA 70

Query: 130 VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSSRLAFASAIQN 176
            +TISYEAQARL DP+YGCVS + ALQQQV +LQAEL  ++ Q   S   A +   +N
Sbjct: 71  AITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSPTSEN 126

[Close]

BLAST of CmaCh06G009020 vs. ExPASy Swiss-Prot
Match: Q9SLB7 (LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-18
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 70  PCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRRNDA 129
           PC  C  + + R C   CIF             AA+HKVFGASNVSKLLL++P+  R +A
Sbjct: 15  PCGAC--KFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRCEA 74

Query: 130 VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQL 162
           VVTI+YEAQARL DPVYGCVS + ALQQQVA LQ+++  +++Q+
Sbjct: 75  VVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQI 116

[Close]

BLAST of CmaCh06G009020 vs. ExPASy TrEMBL
Match: A0A6J1IJP1 (LOB domain-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111474219 PE=3 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 5.3e-81
Identity = 179/205 (87.32%), Postives = 181/205 (88.29%), Query Frame = 0


Query: 70  PCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRRNDA 129
           PC  C  + + R C   CIF             AAVHKVFGASNVSKLLLHIPLSRRNDA
Sbjct: 40  PCGAC--KFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDA 99

Query: 130 VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSSRLAFASAIQNSQ 189
           VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLI SSRLAFASAIQNSQ
Sbjct: 100 VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLI-SSRLAFASAIQNSQ 159

Query: 190 PPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRR 249
           PPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRR
Sbjct: 160 PPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRR 219

Query: 250 SIEDEEDEENSQLPTIFADDLLRPR 263
           SIEDEEDEENSQLPTIFADDLLRPR
Sbjct: 220 SIEDEEDEENSQLPTIFADDLLRPR 241

[Close]

BLAST of CmaCh06G009020 vs. ExPASy TrEMBL
Match: A0A6J1G0I5 (LOB domain-containing protein 20 OS=Cucurbita moschata OX=3662 GN=LOC111449577 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 9.0e-81
Identity = 179/208 (86.06%), Postives = 181/208 (87.02%), Query Frame = 0


Query: 67  ALPPCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRR 126
           A  PC  C  + + R C   CIF             AAVHKVFGASNVSKLLLHIPLSRR
Sbjct: 37  ATAPCGAC--KFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFGASNVSKLLLHIPLSRR 96

Query: 127 NDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSSRLAFASAIQ 186
           NDAVVTISYEAQARLSDPVYGCVSTVL LQQQVASLQAELAAVQSQLI SSRLAFASAIQ
Sbjct: 97  NDAVVTISYEAQARLSDPVYGCVSTVLTLQQQVASLQAELAAVQSQLI-SSRLAFASAIQ 156

Query: 187 NSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHL 246
           NSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHL
Sbjct: 157 NSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHL 216

Query: 247 PRRSIEDEEDEENSQLPTIFADDLLRPR 263
           PRRSIEDEEDEENSQLPTIFADDLLRPR
Sbjct: 217 PRRSIEDEEDEENSQLPTIFADDLLRPR 241

[Close]

BLAST of CmaCh06G009020 vs. ExPASy TrEMBL
Match: A0A6J1D2B2 (LOB domain-containing protein 20 OS=Momordica charantia OX=3673 GN=LOC111016651 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 2.3e-68
Identity = 163/212 (76.89%), Postives = 176/212 (83.02%), Query Frame = 0


Query: 67  ALPPCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRR 126
           ++ PC  C  + + R C   CIF             AAVHKVFGASNVSKLLLHIP++RR
Sbjct: 26  SVAPCGAC--KFLRRKCVNGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVTRR 85

Query: 127 NDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSSRLAFASAIQ 186
           +DAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQ+QLI +SRLAFA+AIQ
Sbjct: 86  HDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQTQLI-NSRLAFATAIQ 145

Query: 187 NSQPPQVGVQLQPAYSNNSSISV--SASTSAHNAINLSSFASNYDLPTETAPSPHHLEPL 246
           NSQPPQVGV LQPAYSNNSS+SV  SASTSAHNAINLSSF SNYDLPTETAPS H LEPL
Sbjct: 146 NSQPPQVGV-LQPAYSNNSSVSVSASASTSAHNAINLSSFTSNYDLPTETAPSSHQLEPL 205

Query: 247 HLPRRSIEDEEDEENSQLPTIFA--DDLLRPR 263
           HLP RSIE+EEDEENSQLPTIF   D+LLR R
Sbjct: 206 HLPHRSIEEEEDEENSQLPTIFTVPDELLRRR 233

[Close]

BLAST of CmaCh06G009020 vs. ExPASy TrEMBL
Match: A0A5D3DPT9 (LOB domain-containing protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007110 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 2.5e-67
Identity = 156/199 (78.39%), Postives = 165/199 (82.91%), Query Frame = 0


Query: 70  PCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRRNDA 129
           PC  C  + + R C   CIF             AAVHKVFGASNVSKLLLHIP+SRRNDA
Sbjct: 30  PCGAC--KFLRRKCINGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDA 89

Query: 130 VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSSRLAFASAIQNSQ 189
           VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQ+Q+I SSRLAFA+A+QNS 
Sbjct: 90  VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQAQVI-SSRLAFAAAVQNSH 149

Query: 190 PPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRR 249
           P QVGV LQPAYSNNSSISVSASTS HNAINLSSFASNYDLPTETAPS HHLEP H P R
Sbjct: 150 PSQVGV-LQPAYSNNSSISVSASTSTHNAINLSSFASNYDLPTETAPSSHHLEPPHFPHR 209

Query: 250 SIEDEEDEENSQLPTIFAD 257
            I++EEDEENSQLP IFAD
Sbjct: 210 PIDEEEDEENSQLPAIFAD 224

[Close]

BLAST of CmaCh06G009020 vs. ExPASy TrEMBL
Match: A0A1S3B8H2 (LOB domain-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103486927 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 2.5e-67
Identity = 156/199 (78.39%), Postives = 165/199 (82.91%), Query Frame = 0


Query: 70  PCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRRNDA 129
           PC  C  + + R C   CIF             AAVHKVFGASNVSKLLLHIP+SRRNDA
Sbjct: 30  PCGAC--KFLRRKCINGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDA 89

Query: 130 VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSSRLAFASAIQNSQ 189
           VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQ+Q+I SSRLAFA+A+QNS 
Sbjct: 90  VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQAQVI-SSRLAFAAAVQNSH 149

Query: 190 PPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRR 249
           P QVGV LQPAYSNNSSISVSASTS HNAINLSSFASNYDLPTETAPS HHLEP H P R
Sbjct: 150 PSQVGV-LQPAYSNNSSISVSASTSTHNAINLSSFASNYDLPTETAPSSHHLEPPHFPHR 209

Query: 250 SIEDEEDEENSQLPTIFAD 257
            I++EEDEENSQLP IFAD
Sbjct: 210 PIDEEEDEENSQLPAIFAD 224

[Close]

BLAST of CmaCh06G009020 vs. NCBI nr
Match: KAG6596968.1 (LOB domain-containing protein 20, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028443.1 LOB domain-containing protein 20 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 311.6 bits (797), Expect = 6.4e-81
Identity = 180/208 (86.54%), Postives = 182/208 (87.50%), Query Frame = 0


Query: 67  ALPPCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRR 126
           A  PC  C  + + R C   CIF             AAVHKVFGASNVSKLLLHIPLSRR
Sbjct: 37  ATAPCGAC--KFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFGASNVSKLLLHIPLSRR 96

Query: 127 NDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSSRLAFASAIQ 186
           NDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLI SSRLAFASAIQ
Sbjct: 97  NDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLI-SSRLAFASAIQ 156

Query: 187 NSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHL 246
           NSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHL
Sbjct: 157 NSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHL 216

Query: 247 PRRSIEDEEDEENSQLPTIFADDLLRPR 263
           PRRSIEDEEDEENSQLPTIFADDLLRPR
Sbjct: 217 PRRSIEDEEDEENSQLPTIFADDLLRPR 241

[Close]

BLAST of CmaCh06G009020 vs. NCBI nr
Match: XP_022973353.1 (LOB domain-containing protein 20-like [Cucurbita maxima] >XP_022975179.1 LOB domain-containing protein 20-like [Cucurbita maxima])

HSP 1 Score: 310.8 bits (795), Expect = 1.1e-80
Identity = 179/205 (87.32%), Postives = 181/205 (88.29%), Query Frame = 0


Query: 70  PCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRRNDA 129
           PC  C  + + R C   CIF             AAVHKVFGASNVSKLLLHIPLSRRNDA
Sbjct: 40  PCGAC--KFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDA 99

Query: 130 VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSSRLAFASAIQNSQ 189
           VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLI SSRLAFASAIQNSQ
Sbjct: 100 VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLI-SSRLAFASAIQNSQ 159

Query: 190 PPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRR 249
           PPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRR
Sbjct: 160 PPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRR 219

Query: 250 SIEDEEDEENSQLPTIFADDLLRPR 263
           SIEDEEDEENSQLPTIFADDLLRPR
Sbjct: 220 SIEDEEDEENSQLPTIFADDLLRPR 241

[Close]

BLAST of CmaCh06G009020 vs. NCBI nr
Match: XP_022945292.1 (LOB domain-containing protein 20 [Cucurbita moschata])

HSP 1 Score: 310.1 bits (793), Expect = 1.9e-80
Identity = 179/208 (86.06%), Postives = 181/208 (87.02%), Query Frame = 0


Query: 67  ALPPCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRR 126
           A  PC  C  + + R C   CIF             AAVHKVFGASNVSKLLLHIPLSRR
Sbjct: 37  ATAPCGAC--KFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFGASNVSKLLLHIPLSRR 96

Query: 127 NDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSSRLAFASAIQ 186
           NDAVVTISYEAQARLSDPVYGCVSTVL LQQQVASLQAELAAVQSQLI SSRLAFASAIQ
Sbjct: 97  NDAVVTISYEAQARLSDPVYGCVSTVLTLQQQVASLQAELAAVQSQLI-SSRLAFASAIQ 156

Query: 187 NSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHL 246
           NSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHL
Sbjct: 157 NSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHL 216

Query: 247 PRRSIEDEEDEENSQLPTIFADDLLRPR 263
           PRRSIEDEEDEENSQLPTIFADDLLRPR
Sbjct: 217 PRRSIEDEEDEENSQLPTIFADDLLRPR 241

[Close]

BLAST of CmaCh06G009020 vs. NCBI nr
Match: XP_023539451.1 (LOB domain-containing protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 309.7 bits (792), Expect = 2.4e-80
Identity = 179/208 (86.06%), Postives = 181/208 (87.02%), Query Frame = 0


Query: 67  ALPPCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRR 126
           A  PC  C  + + R C   CIF             AAVHKVFGASNVSKLLLHIPLSRR
Sbjct: 37  ATAPCGAC--KFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFGASNVSKLLLHIPLSRR 96

Query: 127 NDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSSRLAFASAIQ 186
           NDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLI SSRLAFASAIQ
Sbjct: 97  NDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLI-SSRLAFASAIQ 156

Query: 187 NSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHL 246
           NSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLP ETAPSPHHLEPLHL
Sbjct: 157 NSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPAETAPSPHHLEPLHL 216

Query: 247 PRRSIEDEEDEENSQLPTIFADDLLRPR 263
           PRRSIEDEEDEENSQLPTIFADDLLRPR
Sbjct: 217 PRRSIEDEEDEENSQLPTIFADDLLRPR 241

[Close]

BLAST of CmaCh06G009020 vs. NCBI nr
Match: XP_023521381.1 (LOB domain-containing protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.9 bits (790), Expect = 4.1e-80
Identity = 178/208 (85.58%), Postives = 181/208 (87.02%), Query Frame = 0


Query: 67  ALPPCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRR 126
           A  PC  C  + + R C   CIF             AAVHKVFGASNVSKLLLHIPLSRR
Sbjct: 37  ATAPCGAC--KFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFGASNVSKLLLHIPLSRR 96

Query: 127 NDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSSRLAFASAIQ 186
           NDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLI SSRLAFASAIQ
Sbjct: 97  NDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLI-SSRLAFASAIQ 156

Query: 187 NSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHL 246
           NSQPPQVGVQ+QPAYSNNSSISVSASTSAHNAINLSSFASNYDLP ETAPSPHHLEPLHL
Sbjct: 157 NSQPPQVGVQMQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPAETAPSPHHLEPLHL 216

Query: 247 PRRSIEDEEDEENSQLPTIFADDLLRPR 263
           PRRSIEDEEDEENSQLPTIFADDLLRPR
Sbjct: 217 PRRSIEDEEDEENSQLPTIFADDLLRPR 241

[Close]

BLAST of CmaCh06G009020 vs. TAIR 10
Match: AT3G03760.1 (LOB domain-containing protein 20 )

HSP 1 Score: 149.1 bits (375), Expect = 5.1e-36
Identity = 107/200 (53.50%), Postives = 131/200 (65.50%), Query Frame = 0


Query: 70  PCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRRNDA 129
           PC  C  + + R C   CIF             AAVHKVFGASNVSKLL HIP++RR+DA
Sbjct: 51  PCGAC--KFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIPVNRRHDA 110

Query: 130 VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSSRLAFASAIQ--- 189
           VVTISYEAQARLSDPVYGCVST+LALQQQVASLQAEL+ VQSQLI +SR+A A+ +Q   
Sbjct: 111 VVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQSQLI-NSRVAMANVMQQQT 170

Query: 190 --NSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFAS--NYDLPTETAPSPHHLE 249
               Q  Q+ V  QP YSNNSS S + + +A N+  +++ A+  +YD+   T    H L+
Sbjct: 171 HHQQQQQQLVVMQQPEYSNNSSASTTLAGAAMNSFTMTADAAAVSYDVMAPT-NLEHSLQ 230

[Close]

BLAST of CmaCh06G009020 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-22
Identity = 61/106 (57.55%), Postives = 74/106 (69.81%), Query Frame = 0


Query: 70  PCIRCLERVMYRSCC--CIFRS----------VAAVHKVFGASNVSKLLLHIPLSRRNDA 129
           PC  C  + + R C   CIF             AAVHKVFGASNVSKLLLHIP+ RR+DA
Sbjct: 37  PCGAC--KFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDA 96

Query: 130 VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLIS 164
           VVTI YEAQAR+ DP+YGCV+ + ALQQQV +LQAE++ +Q+ L S
Sbjct: 97  VVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLAS 140

[Close]

BLAST of CmaCh06G009020 vs. TAIR 10
Match: AT4G00210.1 (LOB domain-containing protein 31 )

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-20
Identity = 72/183 (39.34%), Postives = 101/183 (55.19%), Query Frame = 0


Query: 70  PCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRRNDA 129
           PC  C  + + R C   C+F              AVHKVFGASN SKLL+ IP SRR DA
Sbjct: 11  PCGAC--KFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPASRRLDA 70

Query: 130 VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSSRLAFASAIQNSQ 189
           VVT++YEA ARL DPVYGCV  + ALQ QV +LQAELA VQ+QL         S +Q   
Sbjct: 71  VVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQL---------STLQGLP 130

Query: 190 PPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRR 241
           PP      +   +++S++ + +S  + +  N+SS +S+    ++        E + +P  
Sbjct: 131 PPNSQNNSRTEAASSSNVPLISSVDSKD--NMSSSSSHIPCMSQQQEQEQPKEAIEVPTE 180

[Close]

BLAST of CmaCh06G009020 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 96.3 bits (238), Expect = 3.9e-20
Identity = 58/118 (49.15%), Postives = 73/118 (61.86%), Query Frame = 0


Query: 70  PCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRRNDA 129
           PC  C  + + R C   C+F             AA+HKVFGASN SKLL H+P+S R +A
Sbjct: 11  PCGAC--KFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEA 70

Query: 130 VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSSRLAFASAIQN 176
            +TISYEAQARL DP+YGCVS + ALQQQV +LQAEL  ++ Q   S   A +   +N
Sbjct: 71  AITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSPTSEN 126

[Close]

BLAST of CmaCh06G009020 vs. TAIR 10
Match: AT2G42430.1 (lateral organ boundaries-domain 16 )

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-19
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 70  PCIRCLERVMYRSCC--CIF----------RSVAAVHKVFGASNVSKLLLHIPLSRRNDA 129
           PC  C  + + R C   CIF             AA+HKVFGASNVSKLLL++P+  R +A
Sbjct: 15  PCGAC--KFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRCEA 74

Query: 130 VVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQL 162
           VVTI+YEAQARL DPVYGCVS + ALQQQVA LQ+++  +++Q+
Sbjct: 75  VVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQI 116

The following BLAST results are available for this feature:

BLAST of CmaCh06G009020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRV3	7.2e-35	53.50	LOB domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=LBD20 PE=2 S...	[more]
O22131	3.5e-21	57.55	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
O81322	3.2e-19	39.34	LOB domain-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=LBD31 PE=2 S...	[more]
Q9M2J7	5.5e-19	49.15	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
Q9SLB7	1.6e-18	53.85	LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 S...	[more]

BLAST of CmaCh06G009020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IJP1	5.3e-81	87.32	LOB domain-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC11147421...	[more]
A0A6J1G0I5	9.0e-81	86.06	LOB domain-containing protein 20 OS=Cucurbita moschata OX=3662 GN=LOC111449577 P...	[more]
A0A6J1D2B2	2.3e-68	76.89	LOB domain-containing protein 20 OS=Momordica charantia OX=3673 GN=LOC111016651 ...	[more]
A0A5D3DPT9	2.5e-67	78.39	LOB domain-containing protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3B8H2	2.5e-67	78.39	LOB domain-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103486927 PE=3 SV...	[more]

BLAST of CmaCh06G009020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596968.1	6.4e-81	86.54	LOB domain-containing protein 20, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022973353.1	1.1e-80	87.32	LOB domain-containing protein 20-like [Cucurbita maxima] >XP_022975179.1 LOB dom...	[more]
XP_022945292.1	1.9e-80	86.06	LOB domain-containing protein 20 [Cucurbita moschata]	[more]
XP_023539451.1	2.4e-80	86.06	LOB domain-containing protein 20-like [Cucurbita pepo subsp. pepo]	[more]
XP_023521381.1	4.1e-80	85.58	LOB domain-containing protein 20-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh06G009020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03760.1	5.1e-36	53.50	LOB domain-containing protein 20	[more]
AT2G45420.1	2.5e-22	57.55	LOB domain-containing protein 18	[more]
AT4G00210.1	2.3e-20	39.34	LOB domain-containing protein 31	[more]
AT3G58190.1	3.9e-20	49.15	lateral organ boundaries-domain 29	[more]
AT2G42430.1	1.1e-19	53.85	lateral organ boundaries-domain 16	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 140..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 238..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..32
None	No IPR available	PANTHER	PTHR31529:SF12	LOB DOMAIN-CONTAINING PROTEIN 20	coord: 90..252
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 90..252
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 89..158 e-value: 2.9E-21 score: 75.9
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 59..161 score: 12.186098

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G009020.1	CmaCh06G009020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:1900150	regulation of defense response to fungus
cellular_component	GO:0005634	nucleus