CmaCh06G008940 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G008940
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr06: 5716672 .. 5717125 (-)
RNA-Seq Expression	CmaCh06G008940
Synteny	CmaCh06G008940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGGCCTGGATTGCTTTTGCATTACTCTTGTGTTGTGGCTTGTTGCTCCATGCTTTTCTCCTACATATTTCGTAGAGTCTTTCTTTACCTCCCTTTTGAAACTTGTCATTGTAAAACTCCCATCGACTTGTCACAATCTTGCGAAATCCCTATCAAAGTTTCGTTGTAAGGTTCGATTATCCGTCAAACTTAAGCTTTGGTTACGATAAATTTCATGTTATATCGACTTACATATGTGTTTAGTTGGCGAACAAAGCTAGAGAAGTTGCTATGTTTGAAGAGGGTAGGGAGGAGATCTCTAGCGAACTCCAGGGGATGCCACACGACGAGCGCGGTCCCATCGTCGTTCCAGGAGATGACATCATCGGTGGTCGGATCCTCGACCAACAGGTAGGTTTTGGCCAAGAAGGGCGGCGGAGAGGGGTTTGGCTTTTGACACACATCACCTAG

mRNA sequence

ATGTGTGGCCTGGATTGCTTTTGCATTACTCTTGTGTTGTGGCTTGTTGCTCCATGCTTTTCTCCTACATATTTCGTAGAGTCTTTCTTTACCTCCCTTTTGAAACTTGTCATTGTAAAACTCCCATCGACTTGTCACAATCTTGCGAAATCCCTATCAAAGTTTCGTTGTAAGTTGGCGAACAAAGCTAGAGAAGTTGCTATGTTTGAAGAGGGTAGGGAGGAGATCTCTAGCGAACTCCAGGGGATGCCACACGACGAGCGCGGTCCCATCGTCGTTCCAGGAGATGACATCATCGGTGGTCGGATCCTCGACCAACAGGTAGGTTTTGGCCAAGAAGGGCGGCGGAGAGGGGTTTGGCTTTTGACACACATCACCTAG

Coding sequence (CDS)

ATGTGTGGCCTGGATTGCTTTTGCATTACTCTTGTGTTGTGGCTTGTTGCTCCATGCTTTTCTCCTACATATTTCGTAGAGTCTTTCTTTACCTCCCTTTTGAAACTTGTCATTGTAAAACTCCCATCGACTTGTCACAATCTTGCGAAATCCCTATCAAAGTTTCGTTGTAAGTTGGCGAACAAAGCTAGAGAAGTTGCTATGTTTGAAGAGGGTAGGGAGGAGATCTCTAGCGAACTCCAGGGGATGCCACACGACGAGCGCGGTCCCATCGTCGTTCCAGGAGATGACATCATCGGTGGTCGGATCCTCGACCAACAGGTAGGTTTTGGCCAAGAAGGGCGGCGGAGAGGGGTTTGGCTTTTGACACACATCACCTAG

Protein sequence

MCGLDCFCITLVLWLVAPCFSPTYFVESFFTSLLKLVIVKLPSTCHNLAKSLSKFRCKLANKAREVAMFEEGREEISSELQGMPHDERGPIVVPGDDIIGGRILDQQVGFGQEGRRRGVWLLTHIT

Homology

[Close]

BLAST of CmaCh06G008940 vs. ExPASy TrEMBL
Match: A0A453LDK8 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-04
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 58  KLANKAREVAMFEEGREEISSELQGMPHDERGPIVVPGDDIIGGRILDQQVGFGQEGRRR 117
           +L ++AREV + E   E++  EL+  PH ER P++ P D ++  R+LD+ V  GQE RR+
Sbjct: 265 ELPHEAREVVVLEVLGEQVPGELRRPPHHERRPVLAPRDHVVHRRVLDELVRLGQERRRQ 324

Query: 118 G 119
           G
Sbjct: 325 G 325

[Close]

BLAST of CmaCh06G008940 vs. ExPASy TrEMBL
Match: A0A287RZG3 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-04
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 58  KLANKAREVAMFEEGREEISSELQGMPHDERGPIVVPGDDIIGGRILDQQVGFGQEGRRR 117
           +L +KAREV + E   E++  EL+  PHDE  P++ P D ++  R+LD+ V  GQE RR+
Sbjct: 264 ELPHKAREVVVLEVLGEQVPGELRRPPHDEGRPVLAPRDHVVDRRVLDELVRLGQERRRQ 323

[Close]

BLAST of CmaCh06G008940 vs. ExPASy TrEMBL
Match: A0A287RZE2 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-04
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 58  KLANKAREVAMFEEGREEISSELQGMPHDERGPIVVPGDDIIGGRILDQQVGFGQEGRRR 117
           +L +KAREV + E   E++  EL+  PHDE  P++ P D ++  R+LD+ V  GQE RR+
Sbjct: 264 ELPHKAREVVVLEVLGEQVPGELRRPPHDEGRPVLAPRDHVVDRRVLDELVRLGQERRRQ 323

[Close]

BLAST of CmaCh06G008940 vs. ExPASy TrEMBL
Match: A0A287RZF0 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-04
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 58  KLANKAREVAMFEEGREEISSELQGMPHDERGPIVVPGDDIIGGRILDQQVGFGQEGRRR 117
           +L +KAREV + E   E++  EL+  PHDE  P++ P D ++  R+LD+ V  GQE RR+
Sbjct: 74  ELPHKAREVVVLEVLGEQVPGELRRPPHDEGRPVLAPRDHVVDRRVLDELVRLGQERRRQ 133

[Close]

BLAST of CmaCh06G008940 vs. ExPASy TrEMBL
Match: A0A287RZ62 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-04
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 58  KLANKAREVAMFEEGREEISSELQGMPHDERGPIVVPGDDIIGGRILDQQVGFGQEGRRR 117
           +L +KAREV + E   E++  EL+  PHDE  P++ P D ++  R+LD+ V  GQE RR+
Sbjct: 264 ELPHKAREVVVLEVLGEQVPGELRRPPHDEGRPVLAPRDHVVDRRVLDELVRLGQERRRQ 323

[Close]

BLAST of CmaCh06G008940 vs. NCBI nr
Match: KAF7150650.1 (hypothetical protein RHSIM_Rhsim02G0062300 [Rhododendron simsii])

HSP 1 Score: 55.1 bits (131), Expect = 5.2e-04
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 58  KLANKAREVAMFEEGREEISSELQGMPHDERGPIVVPGDDIIGGRILDQQVGFGQEGRR 117
           +L ++A EV + E G EE  SEL  +PHDE G    PGDD++ GR++D  V   QE RR
Sbjct: 15  ELTDEAGEVVVLEVGGEEDPSELGRVPHDEAGLGCAPGDDLVRGRVIDHVVRLQQERRR 73

The following BLAST results are available for this feature:

BLAST of CmaCh06G008940 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G008940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A453LDK8	1.9e-04	42.62	Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S...	[more]
A0A287RZG3	1.9e-04	43.33	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1	[more]
A0A287RZE2	1.9e-04	43.33	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1	[more]
A0A287RZF0	1.9e-04	43.33	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1	[more]
A0A287RZ62	1.9e-04	43.33	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1	[more]

BLAST of CmaCh06G008940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7150650.1	5.2e-04	47.46	hypothetical protein RHSIM_Rhsim02G0062300 [Rhododendron simsii]	[more]

BLAST of CmaCh06G008940 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G008940.1	CmaCh06G008940.1	mRNA