CmaCh06G008890 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G008890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	50S ribosomal protein L16, chloroplastic
Location	Cma_Chr06: 5625610 .. 5626303 (-)
RNA-Seq Expression	CmaCh06G008890
Synteny	CmaCh06G008890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAATCAGGTAGAATACTTTATGAAATGAGTGGAGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAATCCCTCCAACTTTCTAAAATAGTCCCTACGGGTACGTATATTTTCAGACAAACTCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAATCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAACTGAGATAA

mRNA sequence

ATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAATCAGACAAACTCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAATCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAACTGAGATAA

Coding sequence (CDS)

ATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAATCAGACAAACTCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAATCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAACTGAGATAA

Protein sequence

MGSGKGSPEYWVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARKLR

Homology

[Close]

BLAST of CmaCh06G008890 vs. ExPASy Swiss-Prot
Match: Q09ME0 (50S ribosomal protein L16, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.0e-18
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 66  WVRIF-PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 117

[Close]

BLAST of CmaCh06G008890 vs. ExPASy Swiss-Prot
Match: Q4VZN1 (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.0e-18
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 65  WVRIF-PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 116

[Close]

BLAST of CmaCh06G008890 vs. ExPASy Swiss-Prot
Match: B1A972 (50S ribosomal protein L16, chloroplastic OS=Carica papaya OX=3649 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.4e-18
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIAR+
Sbjct: 65  WVRIF-PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARR 116

[Close]

BLAST of CmaCh06G008890 vs. ExPASy Swiss-Prot
Match: A0ZZ72 (50S ribosomal protein L16, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.4e-18
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VT+RPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 65  WVRIF-PDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 116

[Close]

BLAST of CmaCh06G008890 vs. ExPASy Swiss-Prot
Match: Q2L940 (50S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.4e-18
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VT+RPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 65  WVRIF-PDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 116

[Close]

BLAST of CmaCh06G008890 vs. ExPASy TrEMBL
Match: A0A7J6HZS9 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_004350 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.6e-17
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 11 WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
          W+   +SDK VT+RPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 34 WIREDRSDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 86

[Close]

BLAST of CmaCh06G008890 vs. ExPASy TrEMBL
Match: A0A5A7TF88 (Ribosomal protein L16 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold540G00250 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.9e-16
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +  SDK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 49  WVRIF-SDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 100

[Close]

BLAST of CmaCh06G008890 vs. ExPASy TrEMBL
Match: A0A2G2WAC2 (50S ribosomal protein L16, chloroplastic OS=Capsicum baccatum OX=33114 GN=CQW23_16167 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.9e-16
Identity = 52/92 (56.52%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 1   MGSGKGSPEYWV----------------AVVKS-------------DKLVTLRPTETRMG 60
           MGSGKGSPEYW                 A+ ++             DK VTLRP ETRMG
Sbjct: 67  MGSGKGSPEYWALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPAETRMG 126

Query: 61  SGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           SGKGSPEYWVAVVK GRILYEM GV ENIAR+
Sbjct: 127 SGKGSPEYWVAVVKPGRILYEMGGVTENIARR 158

[Close]

BLAST of CmaCh06G008890 vs. ExPASy TrEMBL
Match: A0A172QDH4 (50S ribosomal protein L16, chloroplastic OS=Ziziphus jujuba OX=326968 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.3e-16
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 5   KGSPEYWVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           +G  + WV +   DK VT+RPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIAR+
Sbjct: 61  RGGGKVWVRIF-PDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARR 118

[Close]

BLAST of CmaCh06G008890 vs. ExPASy TrEMBL
Match: A0A218KG73 (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.3e-16
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 65  WVRIF-PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 116

[Close]

BLAST of CmaCh06G008890 vs. NCBI nr
Match: KAF4400807.1 (hypothetical protein G4B88_004350 [Cannabis sativa])

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 11 WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
          W+   +SDK VT+RPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 34 WIREDRSDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 86

[Close]

BLAST of CmaCh06G008890 vs. NCBI nr
Match: PHT42142.1 (50S ribosomal protein L16, chloroplastic [Capsicum baccatum])

HSP 1 Score: 94.4 bits (233), Expect = 4.0e-16
Identity = 52/92 (56.52%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 1   MGSGKGSPEYWV----------------AVVKS-------------DKLVTLRPTETRMG 60
           MGSGKGSPEYW                 A+ ++             DK VTLRP ETRMG
Sbjct: 67  MGSGKGSPEYWALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPAETRMG 126

Query: 61  SGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           SGKGSPEYWVAVVK GRILYEM GV ENIAR+
Sbjct: 127 SGKGSPEYWVAVVKPGRILYEMGGVTENIARR 158

[Close]

BLAST of CmaCh06G008890 vs. NCBI nr
Match: KAA0040686.1 (ribosomal protein L16 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 4.0e-16
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +  SDK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 49  WVRIF-SDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 100

[Close]

BLAST of CmaCh06G008890 vs. NCBI nr
Match: YP_009256364.1 (ribosomal protein L16 [Ziziphus jujuba] >AND82357.1 ribosomal protein L16 [Ziziphus jujuba])

HSP 1 Score: 93.2 bits (230), Expect = 8.9e-16
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 5   KGSPEYWVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           +G  + WV +   DK VT+RPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIAR+
Sbjct: 61  RGGGKVWVRIF-PDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARR 118

[Close]

BLAST of CmaCh06G008890 vs. NCBI nr
Match: QJI81170.1 (50S ribosomal protein L16 [Citrus aurantium] >GAY54614.1 hypothetical protein CUMW_158110 [Citrus unshiu])

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VTLRPTETRMGSGKGSPEYWVAVVK GRILYEMSGVAENIARK
Sbjct: 49  WVRIF-PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK 100

[Close]

BLAST of CmaCh06G008890 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 84.7 bits (208), Expect = 2.9e-17
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 11  WVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           WV +   DK VT+RP ETRMGSGKGSPEYWVAVVK G+ILYEM GV ENIARK
Sbjct: 65  WVRIF-PDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARK 116

[Close]

BLAST of CmaCh06G008890 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-13
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 17  SDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIARK 64
           +DK VT+RP ETRMG GKG+P +WVAVVK G+I+YEM GV+E +AR+
Sbjct: 897 ADKPVTVRPPETRMGRGKGAPAFWVAVVKPGKIIYEMGGVSEKVARE 943

[Close]

BLAST of CmaCh06G008890 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 52.8 bits (125), Expect = 1.2e-07
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 2   GSGKGSPEYWVAVVKSDKLVTLRPTETRMGSGKGSPEYWVAVVKSGRILYEMSGVAENIA 61
           G  + + + WV V  +D  +T +PTE RMG GKG+P  W+A V +G+I +EM GV+   A
Sbjct: 100 GQFRRNGKIWVRVF-ADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLANA 159

Query: 62  RK 64
           R+
Sbjct: 160 RQ 160

The following BLAST results are available for this feature:

BLAST of CmaCh06G008890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09ME0	2.0e-18	86.79	50S ribosomal protein L16, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl16 PE=...	[more]
Q4VZN1	2.0e-18	86.79	50S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=...	[more]
B1A972	4.4e-18	84.91	50S ribosomal protein L16, chloroplastic OS=Carica papaya OX=3649 GN=rpl16 PE=3 ...	[more]
A0ZZ72	4.4e-18	84.91	50S ribosomal protein L16, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl1...	[more]
Q2L940	4.4e-18	84.91	50S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl16 ...	[more]

BLAST of CmaCh06G008890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6HZS9	8.6e-17	84.91	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_004350 PE=3 SV=1	[more]
A0A5A7TF88	1.9e-16	88.68	Ribosomal protein L16 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54...	[more]
A0A2G2WAC2	1.9e-16	56.52	50S ribosomal protein L16, chloroplastic OS=Capsicum baccatum OX=33114 GN=CQW23_...	[more]
A0A172QDH4	4.3e-16	76.27	50S ribosomal protein L16, chloroplastic OS=Ziziphus jujuba OX=326968 GN=rpl16 P...	[more]
A0A218KG73	7.3e-16	86.79	50S ribosomal protein L16, chloroplastic OS=Cucumis sativus var. hardwickii OX=3...	[more]

BLAST of CmaCh06G008890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4400807.1	1.8e-16	84.91	hypothetical protein G4B88_004350 [Cannabis sativa]	[more]
PHT42142.1	4.0e-16	56.52	50S ribosomal protein L16, chloroplastic [Capsicum baccatum]	[more]
KAA0040686.1	4.0e-16	88.68	ribosomal protein L16 [Cucumis melo var. makuwa]	[more]
YP_009256364.1	8.9e-16	76.27	ribosomal protein L16 [Ziziphus jujuba] >AND82357.1 ribosomal protein L16 [Zizip...	[more]
QJI81170.1	1.5e-15	86.79	50S ribosomal protein L16 [Citrus aurantium] >GAY54614.1 hypothetical protein CU...	[more]

BLAST of CmaCh06G008890 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00790.1	2.9e-17	77.36	ribosomal protein L16	[more]
AT2G28830.1	2.0e-13	65.96	PLANT U-BOX 12	[more]
ATMG00080.1	1.2e-07	43.55	ribosomal protein L16	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000114	Ribosomal protein L16	PRINTS	PR00060	RIBOSOMALL16	coord: 35..64 score: 53.73 coord: 5..34 score: 38.47
IPR000114	Ribosomal protein L16	PANTHER	PTHR12220	50S/60S RIBOSOMAL PROTEIN L16	coord: 18..63 coord: 1..21
IPR036920	Ribosomal protein L10e/L16 superfamily	GENE3D	3.90.1170.10	Ribosomal protein L10e/L16	coord: 20..64 e-value: 2.4E-18 score: 68.5 coord: 1..19 e-value: 5.3E-5 score: 25.0
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 18..63
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 1..19
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 18..63 e-value: 2.3E-14 score: 53.5
IPR016180	Ribosomal protein L10e/L16	CDD	cd01433	Ribosomal_L16_L10e	coord: 18..63 e-value: 2.94702E-17 score: 67.1315
None	No IPR available	PANTHER	PTHR12220:SF13	39S RIBOSOMAL PROTEIN L16, MITOCHONDRIAL	coord: 18..63 coord: 1..21
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00701	RIBOSOMAL_L16_2	coord: 29..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G008890.1	CmaCh06G008890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome