CmaCh06G008140 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G008140
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	light-harvesting complex-like protein 3 isotype 1, chloroplastic
Location	Cma_Chr06: 4341167 .. 4342375 (+)
RNA-Seq Expression	CmaCh06G008140
Synteny	CmaCh06G008140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGCTGAGGAGAGGAGAACTGTACTCTCTTCTCCATCACAATGTCTTCTTCCATGGCTTTGTTTTCTCCTCCTTCCCATCTTTCCACTCTCTCTTCTTCATTACGCCACAGAAATTCCTTCTCCTCCATACCTTTTTCTTCTCTCAGAACCAGAAGGAACCCTTCTTCTTCCTCACTTTTCACCATCAGAGCCGCTGCGGAACCGGAGCCGGCTAAGTCCTTAACGGAAGACCAGGAGAGCCTCCCCGGAGCCAATGGCGCGATGGCGGCTGCTGAAGAAGTGGAGGTCGTTACCAAATTTGAAGACGCTAAGTGGATTAATGGAACTTGGGATCTAAATCAGTTCAGGAAACACGGAAGTATCGACTGGGATTCTGTTATTGATTCCGGTAATCTCAATCTTCTTTGGATCTGAGAAAATGAGAAATTAAGCAACTCTTCCTTAAGATCCTAGATTCTCTGTTGATTTTGATTTCAATTGAATAACTGAAATTAGGTTCAAATTGTGTGTAATCTCATGATTTTGGAATTGAGTTTTTCGATCAGAGGCTAGGAGGAGAAAATGGGTGGAAAAGAATCCAGAATCATCAAGTAATGAGGATCCCGTGGTGTTTGGGACATCCATAATTCCATGGTGGGCTTGGATTAAGCGCTACCATCTCCCTGAAGCTGAGACACTCAATGGTATAAACACACGTTTAATATCTAAGTTCTTCTTTGTTGGTAGCGGTTTGAATATGAATGTGGTACCATATTGATGCGAATTTGAGTGATGTGATGGGTTTTGGACGCAGGGCGTGCAGCGATGGTGGGGTTCTTCATGGCTTACTTTGTTGATAGCTTGAGTGGGGTAGGGGTAGTAGGTCAAACGGGCAATTTCTTGTGCAAAACCCTGTTGTTTGTGGCTGTGGTGGGAGTTGTTTTGATCAGAAAGAATGAAGATATTGAGACTTTGAAGAAGTTGATTGACGAGACAAGCTTGTATGACAAGCAATGGCGAGCAACTTGGGAGGATTAAGCTGAAGAAGTTGATTATCTATATCTATAATTTCGCTTTAGATTCCTTTGTTTGTAGCTCAAAATCAAACACTTCTCTTATAGCCCAAGAAAACCCAAGTTTTTAGTCCAATTGCCATTTCCAAACAACAAAACAAACCAAATGGGACACGAAAGGGTTTTGCTGAGCTTTTTGGTAATGATTCACACGTG

mRNA sequence

AGGCTGAGGAGAGGAGAACTGTACTCTCTTCTCCATCACAATGTCTTCTTCCATGGCTTTGTTTTCTCCTCCTTCCCATCTTTCCACTCTCTCTTCTTCATTACGCCACAGAAATTCCTTCTCCTCCATACCTTTTTCTTCTCTCAGAACCAGAAGGAACCCTTCTTCTTCCTCACTTTTCACCATCAGAGCCGCTGCGGAACCGGAGCCGGCTAAGTCCTTAACGGAAGACCAGGAGAGCCTCCCCGGAGCCAATGGCGCGATGGCGGCTGCTGAAGAAGTGGAGGTCGTTACCAAATTTGAAGACGCTAAGTGGATTAATGGAACTTGGGATCTAAATCAGTTCAGGAAACACGGAAGTATCGACTGGGATTCTGTTATTGATTCCGAGGCTAGGAGGAGAAAATGGGTGGAAAAGAATCCAGAATCATCAAGTAATGAGGATCCCGTGGTGTTTGGGACATCCATAATTCCATGGTGGGCTTGGATTAAGCGCTACCATCTCCCTGAAGCTGAGACACTCAATGGGCGTGCAGCGATGGTGGGGTTCTTCATGGCTTACTTTGTTGATAGCTTGAGTGGGGTAGGGGTAGTAGGTCAAACGGGCAATTTCTTGTGCAAAACCCTGTTGTTTGTGGCTGTGGTGGGAGTTGTTTTGATCAGAAAGAATGAAGATATTGAGACTTTGAAGAAGTTGATTGACGAGACAAGCTTGTATGACAAGCAATGGCGAGCAACTTGGGAGGATTAAGCTGAAGAAGTTGATTATCTATATCTATAATTTCGCTTTAGATTCCTTTGTTTGTAGCTCAAAATCAAACACTTCTCTTATAGCCCAAGAAAACCCAAGTTTTTAGTCCAATTGCCATTTCCAAACAACAAAACAAACCAAATGGGACACGAAAGGGTTTTGCTGAGCTTTTTGGTAATGATTCACACGTG

Coding sequence (CDS)

ATGTCTTCTTCCATGGCTTTGTTTTCTCCTCCTTCCCATCTTTCCACTCTCTCTTCTTCATTACGCCACAGAAATTCCTTCTCCTCCATACCTTTTTCTTCTCTCAGAACCAGAAGGAACCCTTCTTCTTCCTCACTTTTCACCATCAGAGCCGCTGCGGAACCGGAGCCGGCTAAGTCCTTAACGGAAGACCAGGAGAGCCTCCCCGGAGCCAATGGCGCGATGGCGGCTGCTGAAGAAGTGGAGGTCGTTACCAAATTTGAAGACGCTAAGTGGATTAATGGAACTTGGGATCTAAATCAGTTCAGGAAACACGGAAGTATCGACTGGGATTCTGTTATTGATTCCGAGGCTAGGAGGAGAAAATGGGTGGAAAAGAATCCAGAATCATCAAGTAATGAGGATCCCGTGGTGTTTGGGACATCCATAATTCCATGGTGGGCTTGGATTAAGCGCTACCATCTCCCTGAAGCTGAGACACTCAATGGGCGTGCAGCGATGGTGGGGTTCTTCATGGCTTACTTTGTTGATAGCTTGAGTGGGGTAGGGGTAGTAGGTCAAACGGGCAATTTCTTGTGCAAAACCCTGTTGTTTGTGGCTGTGGTGGGAGTTGTTTTGATCAGAAAGAATGAAGATATTGAGACTTTGAAGAAGTTGATTGACGAGACAAGCTTGTATGACAAGCAATGGCGAGCAACTTGGGAGGATTAA

Protein sequence

MSSSMALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRRNPSSSSLFTIRAAAEPEPAKSLTEDQESLPGANGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARRRKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLIDETSLYDKQWRATWED

Homology

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BLAST of CmaCh06G008140 vs. ExPASy Swiss-Prot
Match: Q6NKS4 (Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.2 PE=1 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.9e-71
Identity = 147/253 (58.10%), Postives = 175/253 (69.17%), Query Frame = 0


Query: 1   MSSSMALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRR------------NPSSSSLFT 60
           MS SMALFSPP     +SSSL++ N    I  S L T+R            N ++S +  
Sbjct: 1   MSISMALFSPP-----ISSSLQNPNLIPKISTSLLSTKRFSLISVPRASSDNGTTSPVVE 60

Query: 61  I----RAAAEPEPAKSLTEDQE-SLPGANGAMAAAEEVEVVTKFEDAKWINGTWDLNQFR 120
           I      A E  P KS  E    S  GA G  A     E V K+++AKW+NGTWDL QF 
Sbjct: 61  IPKPASVAVEEVPVKSPAESSSASENGAVGGEATDSSTETVIKYQNAKWVNGTWDLKQFE 120

Query: 121 KHGSIDWDSVIDSEARRRKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNG 180
           K G  DWDSVI SEA+RRKW+E NPE++SN++ VVF TSIIPWWAW+KRYHLPEAE LNG
Sbjct: 121 KDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMKRYHLPEAELLNG 180

Query: 181 RAAMVGFFMAYFVDSLSGVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLIDET 237
           RAAM+GFFMAYFVDSL+GVG+V Q GNF CKTLLFVAV GV+ IRKNED++ LK L DET
Sbjct: 181 RAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDLDKLKDLFDET 240

[Close]

BLAST of CmaCh06G008140 vs. ExPASy Swiss-Prot
Match: Q9SYX1 (Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.1 PE=1 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.6e-70
Identity = 144/255 (56.47%), Postives = 175/255 (68.63%), Query Frame = 0


Query: 5   MALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRR-------NPSSSSLFTIRAAA---- 64
           MALFSPP      SSSL++ N      FS L + R         SS S  T   AA    
Sbjct: 1   MALFSPP----ISSSSLQNPNFIPKFSFSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVE 60

Query: 65  EPEPAKSLTED----------QESLPGANGAMAAAE--EVEVVTKFEDAKWINGTWDLNQ 124
            PEP + + ++          +E+    N A+   E    E V KF+DA+WINGTWDL Q
Sbjct: 61  APEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWDLKQ 120

Query: 125 FRKHGSIDWDSVIDSEARRRKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETL 184
           F K G  DWDSVI +EA+RRKW+E+NPE++SN++PV+F TSIIPWWAWIKRYHLPEAE L
Sbjct: 121 FEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELL 180

Query: 185 NGRAAMVGFFMAYFVDSLSGVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLID 237
           NGRAAM+GFFMAYFVDSL+GVG+V Q GNF CKTLLFVAV GV+ IRKNED++ LK L D
Sbjct: 181 NGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKNLFD 240

[Close]

BLAST of CmaCh06G008140 vs. ExPASy TrEMBL
Match: A0A6J1KTD1 (light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111498485 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 4.0e-128
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MSSSMALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRRNPSSSSLFTIRAAAEPEPAKS 60
           MSSSMALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRRNPSSSSLFTIRAAAEPEPAKS
Sbjct: 1   MSSSMALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRRNPSSSSLFTIRAAAEPEPAKS 60

Query: 61  LTEDQESLPGANGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR 120
           LTEDQESLPGANGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR
Sbjct: 61  LTEDQESLPGANGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR 120

Query: 121 RKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS 180
           RKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS
Sbjct: 121 RKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS 180

Query: 181 GVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLIDETSLYDKQWRATWED 237
           GVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLIDETSLYDKQWRATWED
Sbjct: 181 GVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLIDETSLYDKQWRATWED 236

[Close]

BLAST of CmaCh06G008140 vs. ExPASy TrEMBL
Match: A0A6J1F3X0 (light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441881 PE=4 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 5.5e-122
Identity = 226/236 (95.76%), Postives = 230/236 (97.46%), Query Frame = 0


Query: 1   MSSSMALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRRNPSSSSLFTIRAAAEPEPAKS 60
           MSSSMALFSPP HLSTLSSSL HRNSFSSIPFSSLRTRR+PSSSSLFTIRAAAEPEPAKS
Sbjct: 1   MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSPSSSSLFTIRAAAEPEPAKS 60

Query: 61  LTEDQESLPGANGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR 120
           +TE+QESLPG NGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR
Sbjct: 61  VTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR 120

Query: 121 RKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS 180
           RKWVEKN ESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS
Sbjct: 121 RKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS 180

Query: 181 GVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLIDETSLYDKQWRATWED 237
           GVGVVGQ GNF CKTLLFVAVVGVVLIR+NEDIETLKKLIDETSLYDKQWRATWED
Sbjct: 181 GVGVVGQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETSLYDKQWRATWED 236

[Close]

BLAST of CmaCh06G008140 vs. ExPASy TrEMBL
Match: A0A0A0L5D8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017160 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 4.4e-95
Identity = 189/258 (73.26%), Postives = 208/258 (80.62%), Query Frame = 0


Query: 3   SSMALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRR-NPSSSSLFTIRAAA-------- 62
           SSMALFSP SHLST S S  H   FS  PFSSLRTR  + SSSSLFTIRA A        
Sbjct: 2   SSMALFSPSSHLSTFSPS-HHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGISG 61

Query: 63  --------------EPEPAKSLTEDQESLPGANGAMAAAEE-VEVVTKFEDAKWINGTWD 122
                         +PEPAK   E+QESL G NG++AAAEE VEVV+KFED KW+NGTWD
Sbjct: 62  GSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTWD 121

Query: 123 LNQFRKHGSIDWDSVIDSEARRRKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEA 182
           LNQF+K+GS DWD+VID+EARRRKW+E NPESSSNEDPVVF TSI+PWWAWIKRYHLPEA
Sbjct: 122 LNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEA 181

Query: 183 ETLNGRAAMVGFFMAYFVDSLSGVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKK 237
           E LNGRAAMVGFFMAYFVDSL+GVG+VGQ GNF CKTLLFVAVVGV+LIRKNEDIETLKK
Sbjct: 182 ELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKK 241

[Close]

BLAST of CmaCh06G008140 vs. ExPASy TrEMBL
Match: A0A5A7TG76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00700 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.9e-93
Identity = 185/253 (73.12%), Postives = 204/253 (80.63%), Query Frame = 0


Query: 3   SSMALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRR--NPSSSSLFTIRAAAE------ 62
           SSMALFSP SHLSTLS S  H   FS  PFSSLRTR   + SSSSLFTIRA A+      
Sbjct: 2   SSMALFSPSSHLSTLSPSSHHTTHFSFRPFSSLRTRNPSSSSSSSLFTIRATADNGAGIS 61

Query: 63  ----------PEPAKSLTEDQESLPGANGAMAAAEE-VEVVTKFEDAKWINGTWDLNQFR 122
                     P   K     +ESL G NG++AAAEE VEVV+KFED KW+NGTWDLNQF+
Sbjct: 62  GGSATVAVETPVEQKDPEPAEESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTWDLNQFQ 121

Query: 123 KHGSIDWDSVIDSEARRRKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNG 182
           K+GS DWD+VID+EARRRKW+E NPESSSNEDPVVF TSI+PWWAWIKRYHLPEAE LNG
Sbjct: 122 KNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEAELLNG 181

Query: 183 RAAMVGFFMAYFVDSLSGVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLIDET 237
           RAAMVGFFMAYFVDSL+GVG+VGQ GNF CKTLLFVAVVGV+LIRKNEDIETLKKLIDET
Sbjct: 182 RAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLIDET 241

[Close]

BLAST of CmaCh06G008140 vs. ExPASy TrEMBL
Match: A0A1S3BLD8 (uncharacterized protein LOC103490842 OS=Cucumis melo OX=3656 GN=LOC103490842 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.9e-93
Identity = 185/253 (73.12%), Postives = 204/253 (80.63%), Query Frame = 0


Query: 3   SSMALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRR--NPSSSSLFTIRAAAE------ 62
           SSMALFSP SHLSTLS S  H   FS  PFSSLRTR   + SSSSLFTIRA A+      
Sbjct: 2   SSMALFSPSSHLSTLSPSSHHTTHFSFRPFSSLRTRNPSSSSSSSLFTIRATADNGAGIS 61

Query: 63  ----------PEPAKSLTEDQESLPGANGAMAAAEE-VEVVTKFEDAKWINGTWDLNQFR 122
                     P   K     +ESL G NG++AAAEE VEVV+KFED KW+NGTWDLNQF+
Sbjct: 62  GGSATVAVETPVEQKDPEPAEESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTWDLNQFQ 121

Query: 123 KHGSIDWDSVIDSEARRRKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNG 182
           K+GS DWD+VID+EARRRKW+E NPESSSNEDPVVF TSI+PWWAWIKRYHLPEAE LNG
Sbjct: 122 KNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEAELLNG 181

Query: 183 RAAMVGFFMAYFVDSLSGVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLIDET 237
           RAAMVGFFMAYFVDSL+GVG+VGQ GNF CKTLLFVAVVGV+LIRKNEDIETLKKLIDET
Sbjct: 182 RAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLIDET 241

[Close]

BLAST of CmaCh06G008140 vs. NCBI nr
Match: XP_023005522.1 (light-harvesting complex-like protein 3 isotype 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 467.2 bits (1201), Expect = 8.2e-128
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MSSSMALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRRNPSSSSLFTIRAAAEPEPAKS 60
           MSSSMALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRRNPSSSSLFTIRAAAEPEPAKS
Sbjct: 1   MSSSMALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRRNPSSSSLFTIRAAAEPEPAKS 60

Query: 61  LTEDQESLPGANGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR 120
           LTEDQESLPGANGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR
Sbjct: 61  LTEDQESLPGANGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR 120

Query: 121 RKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS 180
           RKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS
Sbjct: 121 RKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS 180

Query: 181 GVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLIDETSLYDKQWRATWED 237
           GVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLIDETSLYDKQWRATWED
Sbjct: 181 GVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLIDETSLYDKQWRATWED 236

[Close]

BLAST of CmaCh06G008140 vs. NCBI nr
Match: XP_022934837.1 (light-harvesting complex-like protein 3 isotype 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 446.8 bits (1148), Expect = 1.1e-121
Identity = 226/236 (95.76%), Postives = 230/236 (97.46%), Query Frame = 0


Query: 1   MSSSMALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRRNPSSSSLFTIRAAAEPEPAKS 60
           MSSSMALFSPP HLSTLSSSL HRNSFSSIPFSSLRTRR+PSSSSLFTIRAAAEPEPAKS
Sbjct: 1   MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSPSSSSLFTIRAAAEPEPAKS 60

Query: 61  LTEDQESLPGANGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR 120
           +TE+QESLPG NGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR
Sbjct: 61  VTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR 120

Query: 121 RKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS 180
           RKWVEKN ESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS
Sbjct: 121 RKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS 180

Query: 181 GVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLIDETSLYDKQWRATWED 237
           GVGVVGQ GNF CKTLLFVAVVGVVLIR+NEDIETLKKLIDETSLYDKQWRATWED
Sbjct: 181 GVGVVGQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETSLYDKQWRATWED 236

[Close]

BLAST of CmaCh06G008140 vs. NCBI nr
Match: KAG7030162.1 (Light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 440.7 bits (1132), Expect = 8.2e-120
Identity = 223/236 (94.49%), Postives = 227/236 (96.19%), Query Frame = 0


Query: 1   MSSSMALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRRNPSSSSLFTIRAAAEPEPAKS 60
           MSSSMALFSPP HLSTLSSSL HRNSFSSIPFSSLRTRR+ S SSLFTIRAAAEPEPAKS
Sbjct: 1   MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSASCSSLFTIRAAAEPEPAKS 60

Query: 61  LTEDQESLPGANGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR 120
           +TE+QESLPG NGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR
Sbjct: 61  VTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR 120

Query: 121 RKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS 180
           RKWVEKN ESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS
Sbjct: 121 RKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS 180

Query: 181 GVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLIDETSLYDKQWRATWED 237
           GVGVVG+ GNF CKTLLFVAVVGVV IRKNEDIETLKKLIDETSLYDKQWRATWED
Sbjct: 181 GVGVVGEMGNFFCKTLLFVAVVGVVFIRKNEDIETLKKLIDETSLYDKQWRATWED 236

[Close]

BLAST of CmaCh06G008140 vs. NCBI nr
Match: XP_023539962.1 (light-harvesting complex-like protein 3 isotype 2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 439.9 bits (1130), Expect = 1.4e-119
Identity = 222/236 (94.07%), Postives = 229/236 (97.03%), Query Frame = 0


Query: 1   MSSSMALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRRNPSSSSLFTIRAAAEPEPAKS 60
           MSSSMAL SPPSHLSTLSSSLR+RNSFSSIPFSSLRTRR+PSSSSLFTIRAAA+PEPAKS
Sbjct: 1   MSSSMALSSPPSHLSTLSSSLRYRNSFSSIPFSSLRTRRSPSSSSLFTIRAAADPEPAKS 60

Query: 61  LTEDQESLPGANGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR 120
           +TE+QESL G NGAMA AEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR
Sbjct: 61  VTEEQESLAGTNGAMATAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARR 120

Query: 121 RKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS 180
           RKWVEKN ESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS
Sbjct: 121 RKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLS 180

Query: 181 GVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLIDETSLYDKQWRATWED 237
           GVG+VGQ GNF CKTLLFVAVVGVVLIR+NEDIETLKKLIDETSLYDKQWRATWED
Sbjct: 181 GVGLVGQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETSLYDKQWRATWED 236

[Close]

BLAST of CmaCh06G008140 vs. NCBI nr
Match: XP_023539961.1 (light-harvesting complex-like protein 3 isotype 2, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 434.1 bits (1115), Expect = 7.7e-118
Identity = 222/240 (92.50%), Postives = 229/240 (95.42%), Query Frame = 0


Query: 1   MSSSMALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRRNPSSSSLFTIRAAAEPEPAKS 60
           MSSSMAL SPPSHLSTLSSSLR+RNSFSSIPFSSLRTRR+PSSSSLFTIRAAA+PEPAKS
Sbjct: 1   MSSSMALSSPPSHLSTLSSSLRYRNSFSSIPFSSLRTRRSPSSSSLFTIRAAADPEPAKS 60

Query: 61  LTEDQESLPGANGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVID----S 120
           +TE+QESL G NGAMA AEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVID    S
Sbjct: 61  VTEEQESLAGTNGAMATAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSVFRS 120

Query: 121 EARRRKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFV 180
           EARRRKWVEKN ESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFV
Sbjct: 121 EARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFV 180

Query: 181 DSLSGVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLIDETSLYDKQWRATWED 237
           DSLSGVG+VGQ GNF CKTLLFVAVVGVVLIR+NEDIETLKKLIDETSLYDKQWRATWED
Sbjct: 181 DSLSGVGLVGQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETSLYDKQWRATWED 240

[Close]

BLAST of CmaCh06G008140 vs. TAIR 10
Match: AT5G47110.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 270.4 bits (690), Expect = 1.4e-72
Identity = 147/253 (58.10%), Postives = 175/253 (69.17%), Query Frame = 0


Query: 1   MSSSMALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRR------------NPSSSSLFT 60
           MS SMALFSPP     +SSSL++ N    I  S L T+R            N ++S +  
Sbjct: 1   MSISMALFSPP-----ISSSLQNPNLIPKISTSLLSTKRFSLISVPRASSDNGTTSPVVE 60

Query: 61  I----RAAAEPEPAKSLTEDQE-SLPGANGAMAAAEEVEVVTKFEDAKWINGTWDLNQFR 120
           I      A E  P KS  E    S  GA G  A     E V K+++AKW+NGTWDL QF 
Sbjct: 61  IPKPASVAVEEVPVKSPAESSSASENGAVGGEATDSSTETVIKYQNAKWVNGTWDLKQFE 120

Query: 121 KHGSIDWDSVIDSEARRRKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNG 180
           K G  DWDSVI SEA+RRKW+E NPE++SN++ VVF TSIIPWWAW+KRYHLPEAE LNG
Sbjct: 121 KDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMKRYHLPEAELLNG 180

Query: 181 RAAMVGFFMAYFVDSLSGVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLIDET 237
           RAAM+GFFMAYFVDSL+GVG+V Q GNF CKTLLFVAV GV+ IRKNED++ LK L DET
Sbjct: 181 RAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDLDKLKDLFDET 240

[Close]

BLAST of CmaCh06G008140 vs. TAIR 10
Match: AT4G17600.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 266.2 bits (679), Expect = 2.6e-71
Identity = 144/255 (56.47%), Postives = 175/255 (68.63%), Query Frame = 0


Query: 5   MALFSPPSHLSTLSSSLRHRNSFSSIPFSSLRTRR-------NPSSSSLFTIRAAA---- 64
           MALFSPP      SSSL++ N      FS L + R         SS S  T   AA    
Sbjct: 1   MALFSPP----ISSSSLQNPNFIPKFSFSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVE 60

Query: 65  EPEPAKSLTED----------QESLPGANGAMAAAE--EVEVVTKFEDAKWINGTWDLNQ 124
            PEP + + ++          +E+    N A+   E    E V KF+DA+WINGTWDL Q
Sbjct: 61  APEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWDLKQ 120

Query: 125 FRKHGSIDWDSVIDSEARRRKWVEKNPESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETL 184
           F K G  DWDSVI +EA+RRKW+E+NPE++SN++PV+F TSIIPWWAWIKRYHLPEAE L
Sbjct: 121 FEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELL 180

Query: 185 NGRAAMVGFFMAYFVDSLSGVGVVGQTGNFLCKTLLFVAVVGVVLIRKNEDIETLKKLID 237
           NGRAAM+GFFMAYFVDSL+GVG+V Q GNF CKTLLFVAV GV+ IRKNED++ LK L D
Sbjct: 181 NGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKNLFD 240

The following BLAST results are available for this feature:

BLAST of CmaCh06G008140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NKS4	1.9e-71	58.10	Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis ...	[more]
Q9SYX1	3.6e-70	56.47	Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis ...	[more]

BLAST of CmaCh06G008140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KTD1	4.0e-128	100.00	light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Cucurbita ma...	[more]
A0A6J1F3X0	5.5e-122	95.76	light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Cucurbita mo...	[more]
A0A0A0L5D8	4.4e-95	73.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017160 PE=4 SV=1	[more]
A0A5A7TG76	1.9e-93	73.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BLD8	1.9e-93	73.12	uncharacterized protein LOC103490842 OS=Cucumis melo OX=3656 GN=LOC103490842 PE=...	[more]

BLAST of CmaCh06G008140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005522.1	8.2e-128	100.00	light-harvesting complex-like protein 3 isotype 2, chloroplastic [Cucurbita maxi...	[more]
XP_022934837.1	1.1e-121	95.76	light-harvesting complex-like protein 3 isotype 2, chloroplastic [Cucurbita mosc...	[more]
KAG7030162.1	8.2e-120	94.49	Light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita argy...	[more]
XP_023539962.1	1.4e-119	94.07	light-harvesting complex-like protein 3 isotype 2, chloroplastic isoform X2 [Cuc...	[more]
XP_023539961.1	7.7e-118	92.50	light-harvesting complex-like protein 3 isotype 2, chloroplastic isoform X1 [Cuc...	[more]

BLAST of CmaCh06G008140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47110.1	1.4e-72	58.10	Chlorophyll A-B binding family protein	[more]
AT4G17600.1	2.6e-71	56.47	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..74
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 76..235
None	No IPR available	PANTHER	PTHR14154:SF91	BNAA06G35590D PROTEIN	coord: 76..235
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 125..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G008140.1	CmaCh06G008140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding