CmaCh06G008090 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G008090
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr06: 4285727 .. 4289313 (-)
RNA-Seq Expression	CmaCh06G008090
Synteny	CmaCh06G008090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGTGAGTACCTGCAGAAGAAGTTCATCATGAGCTCAAATCCATACTTGCGGATCCAATCACACACAAGTAATCAAGCAGGTTATAATGCATCAATCAGGCATCCAACTGTCATATTATTTGCATAGCGACCAACGAGAGCTTCAAGCACAAGTTTTGAGTGGCTCGGGATATAATTTTGGATGTTTATCATTTCATAAGTTTCAATAACACGTGAACAATCACAACCCGCTTTTAAGCAAGCCAAGAGGGAGCTGTCAAATCTTTGGCAGGTGTTCTGATTTCATCTAACTTTGATGAATGTGGTGATTCTTCTTCTTCTTCTTCCTATTTTTAGTTTGTTTGGTGGGGGACTTTACTATTATGGAAACAGGAATTTGAGAGCAACATATGTAACAAGGTTTGAGTTTCCTCAAGTCATTCAAACCAAAGCTAGTCTTGCTTGATTACTAAACCAGCACGCACACTCAACTTTATGTTGAAAAAGAACAAAAGATTCTGGGAATAAGTCAAGTTTTAGAAATACGGGACCGAAACTATGAGATCCCACATCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACTTCTCCCCAGTAGACGCGTTTGAAAAACCTTGGCCTTGGGGGAAACCCAGAAGGGAAAGCCCAAAAAGAACAATATTTGCTAGCGAGGAGGTTAAGCCCCGAATGGAGGTGGACACCTGGCAGTGTGCCAGGGAGGACGCAGGGCCCCAAAGGGGGTGGATCGGGGGGTTCCACATTGATTGGAGAGAGAAACGAGTGCCAACGAGGACGTTGGGCCCTGAAAGGGGGTGGATTGTGAGATCCTACATTGGTTGGGAGGAGAACAAAACATTTTTTATAAGGGTGTGGAAATCTCTCTCTCTAGCAAACTGTGTTTTAAAAACCTTGAGGAGAAGTTTGAAAGGAAAAGTCTAAAGAGGACAATATCTGCTAGCGGTAGACTTGGACGGTTACAAAAACTTCAAATCCAGATAGTTCCAACACAACTATTTAAAAGAAATGAGAATAGAAAGAGAGAGAAGCAAAATTTTGTGTAGTGCATAATGACTATATCAGCAAGTGAGAATGAAATGAAGCAAAATTTTAAATCTTAGATTGTAGAAAGAAATCAAAATGAACTCAATACTTACAGGGGAAATACAATCTCCACACCTACACCAGCAATAATTCTTCGAATTCTAATCGTTGTGTGGATGCCAGCATTTTGTTTTGATATCACAATTCCTCTATAAACAGAAAGCCTACGCCTATTTTCTGGAACTTCCTGTGGTGGAAATAACATTTTTATTCAAAAGAAAGTTAAGATAAACCTTGCATCTTCACAAGAGTTTAAATTATAAAGATTAACAATGAGATTTACCAGTTTAATTTCCACAATATCACCAGTTCTAACGTCTGGAATGGGCCTTTCCTTCTCTGATGCCTCAACTGCCCGCTTATTAAGTATCTACAGAAGAGAAACAATGAACAAAACTAAAACCAAATTCAAACTATCCCATCACATGTTCGACTGTCACCTGCAATCTAAAATTTCACCATTGATAGCTGAAATCTTATACTAAACTGAACTGTAATGACTTCTAAAAAGCACAGAATTCAAGAGAACCAGTAACAAAACTACACTTCCAGTTGCAAGAATGGATAGAACAATTACCCCCATTACATCCCCAAGCTTAACTCGAGGTTTTCTCGGCGGTTTCACCTCCTCAGGCTGAGCATCAGATTCCACTACTCCTTCTACTTCAGCCTCGGGAGCTTCTTCCGCCGCTTCCGCTTCAGAATTTACCTCAGCTCTCACAACAAAAGTCCGTTTCACCGGCCCCGCAACGGCATGGTGAAAATGGCAGCCGATTGAACTCGAGGAAAGAGTAGAAAACGAAAGCCGGTTACCATAAATTGCGGAACGAAACCCTAATTTCCTCGGCGCGCATTGGTTGGGGGTTCTCGGAATGGAAAACACGGCCTAGAAACAAGAAGAAAATTGAGAAGGAAAATGAAGTAGAGAAGGGGAGTATTGAGAGAAAGGAAAAGGCGAAAGGAGGAAGTGTACCTGAGGGAGAATCTTGGAGGCCATTGATGAAGGAGTTGGAACTTCTGAAGCGGAGAAATGAAACAGAATTAGAGATGAAGGGAGAGAATCATGGCAGTAAGTGTGTGTTCTGGTGTGTTCTTCATCCAAGAAGAATTTGAAGCTGATCCCTTATCCACTGTGATACCACCATCACCATCTCTTGGGTTGAAATGATGCGGGTCGGTACTGGGTCGGGTCAGACCGGGTTGTCCATCTTAAAATGTTTTTGACCCTGCTATAATAGTTGTGACCGATATCTACAATAGCCAAATTGCTTCCTATTTTCTCTAGTACTTTATTAACACTATTTAGTGGTTTAGGTTGGACCTAGTAGTATCCCTACCGAGTAATAGGTAATCAAGAATCTATACGTTAAATTTAATCTAGATCGATCAAATAGGATAGCTCGTCAGGTGCCTCTTTTGTGCCTGAAAATGTGTCATTGGTCTCTCCTTAACAAGGTTGCGGCTCTGTAAATCTATCTTGAGAGGGAATGAGAGACCACACAAGTAAACTTAGTAGTTGGTCGACACATAAGGTCGCTCCTCTAAACTATTTAGCTTTATGGTTTTTGTGGAAGGGTCGCCAATTAACCTTACTCAAGGATGTTCAGATGGATGATGTCATATTGTTCTATAATATGATTAAGATGAGGTAGTACCTACAAATCTAGATAACGATGATTTATTTATGTGGCAAAGAAAGATAGTTAAAGTTTGAGGAATAGGAAAGTTGGTTCACCCTAGAGATTAGTTACGTCGTCGTCGTCGTCTAGTAGATTTATAGTGCCAGAAAATGTGAACAATCTCAAAACCCCAATTGAACACGGGTGAAATAAGCGATTGACTATGTCTTGACTCTATCGACCTGAACTAATAAAAAAAGGGTAAAAAAAAGTAAATGTGTATACGTGGAAGTGTACAAGAATGGTAGCATGGAAAATTCAATGCACTCGTAAGTAACATTTACCCTCAAAGCGTCTCTCTTCTTGCCCTTTATATGTAATCATCTTCTCCCACCTTCTTCCTCGCTTCAATCTCTCTTTCTCTTCTTTCTTGGAGCAATGGCGACCGCACGTGCCATGCTCGTGCTCGCCCTCTCTTTTTTTGCCCTTTCCTCCTCCGCCATTGCTCAAGGTCCCTCCCCTGCTCCTCTTCCGCTGCCGCCCCGCCGCGTCCATCAACCCCACCTCCGGTTGCATCACCCGCCATGTCCCCACCGGCTGCCTCACCTCCACCAATCAACTCATCTCCCCCGATGGCGGCTTCTCCGCCGTGCATGGATATGAGCTCAGTCTCAGTCCCAATGCCCGACAGCCCACCATCACTTCCAAGCCCAAGCGCGGGATTTTCCATACACCACAGCGGCTCAAGGCGGGCCTTGCGGCGGTGTTGGGTGGCATGGCCGTCGTCCTTACCCATTTATGCATTCTTTTTTCTTTTCTTTACTTTCATTAGCACCATGAGTGATTTGTAG

mRNA sequence

ATGTTTGGTGAGTACCTGCAGAAGAAGTTCATCATGAGCTCAAATCCATACTTGCGGATCCAATCACACACAAGTAATCAAGCAGTTTCAATAACACGTGAACAATCACAACCCGCTTTTAAGCAAGCCAAGAGGGAGCTGTCAAATCTTTGGCAGAACAATTACCCCCATTACATCCCCAAGCTTAACTCGAGGTTTTCTCGGCGGTTTCACCTCCTCAGGCTGAGCATCAGATTCCACTACTCCTTCTACTTCAGCCTCGGGAGCTTCTTCCGCCGCTTCCGCTTCAGAATTTACCTCAGCTCTCACAACAAAAGTCCGTTTCACCGGCCCCGCAACGGCATGAAAACGAAAGCCGGTTACCATAAATTGCGGAACGAAACCCTAATTTCCTCGGCGCGCATTGGTTGGGGGTTCTCGGAATGGAAAACACGGCCTAGAAACAAGAAGAAAATTGAGAAGGAAAATGAAGTAGAGAAGGGGAGTATTGAGAGAAAGGAAAAGGCGAAAGGAGGAAGTGTACCTGAGGGAGAATCTTGGAGGCCATTGATGAAGGAGTTGGAACTTCTGAAGCGGAGAAATGAAACAGAATTAGAGATGAAGGGAGAGAATCATGGCAGTAACAATGGCGACCGCACGTGCCATGCTCGTGCTCGCCCTCTCTTTTTTTGCCCTTTCCTCCTCCGCCATTGCTCAAGGTCCCTCCCCTGCTCCTCTTCCGCTGCCGCCCCGCCGCGTCCATCAACCCCACCTCCGGTTGCATCACCCGCCATGTCCCCACCGGCTGCCTCACCTCCACCAATCAACTCATCTCCCCCGATGGCGGCTTCTCCGCCGTGCATGGATATGAGCTCAGTCTCAGTCCCAATGCCCGACAGCCCACCATCACTTCCAAGCCCAAGCGCGGGATTTTCCATACACCACAGCGGCTCAAGGCGGGCCTTGCGGCGGTGTTGGGTGGCATGGCCGTCGTCCTTACCCATTTATGCATTCTTTTTTCTTTTCTTTACTTTCATTAGCACCATGAGTGATTTGTAG

Coding sequence (CDS)

ATGTTTGGTGAGTACCTGCAGAAGAAGTTCATCATGAGCTCAAATCCATACTTGCGGATCCAATCACACACAAGTAATCAAGCAGTTTCAATAACACGTGAACAATCACAACCCGCTTTTAAGCAAGCCAAGAGGGAGCTGTCAAATCTTTGGCAGAACAATTACCCCCATTACATCCCCAAGCTTAACTCGAGGTTTTCTCGGCGGTTTCACCTCCTCAGGCTGAGCATCAGATTCCACTACTCCTTCTACTTCAGCCTCGGGAGCTTCTTCCGCCGCTTCCGCTTCAGAATTTACCTCAGCTCTCACAACAAAAGTCCGTTTCACCGGCCCCGCAACGGCATGAAAACGAAAGCCGGTTACCATAAATTGCGGAACGAAACCCTAATTTCCTCGGCGCGCATTGGTTGGGGGTTCTCGGAATGGAAAACACGGCCTAGAAACAAGAAGAAAATTGAGAAGGAAAATGAAGTAGAGAAGGGGAGTATTGAGAGAAAGGAAAAGGCGAAAGGAGGAAGTGTACCTGAGGGAGAATCTTGGAGGCCATTGATGAAGGAGTTGGAACTTCTGAAGCGGAGAAATGAAACAGAATTAGAGATGAAGGGAGAGAATCATGGCAGTAACAATGGCGACCGCACGTGCCATGCTCGTGCTCGCCCTCTCTTTTTTTGCCCTTTCCTCCTCCGCCATTGCTCAAGGTCCCTCCCCTGCTCCTCTTCCGCTGCCGCCCCGCCGCGTCCATCAACCCCACCTCCGGTTGCATCACCCGCCATGTCCCCACCGGCTGCCTCACCTCCACCAATCAACTCATCTCCCCCGATGGCGGCTTCTCCGCCGTGCATGGATATGAGCTCAGTCTCAGTCCCAATGCCCGACAGCCCACCATCACTTCCAAGCCCAAGCGCGGGATTTTCCATACACCACAGCGGCTCAAGGCGGGCCTTGCGGCGGTGTTGGGTGGCATGGCCGTCGTCCTTACCCATTTATGCATTCTTTTTTCTTTTCTTTACTTTCATTAGCACCATGAGTGATTTGTAG

Protein sequence

MFGEYLQKKFIMSSNPYLRIQSHTSNQAVSITREQSQPAFKQAKRELSNLWQNNYPHYIPKLNSRFSRRFHLLRLSIRFHYSFYFSLGSFFRRFRFRIYLSSHNKSPFHRPRNGMKTKAGYHKLRNETLISSARIGWGFSEWKTRPRNKKKIEKENEVEKGSIERKEKAKGGSVPEGESWRPLMKELELLKRRNETELEMKGENHGSNNGDRTCHARARPLFFCPFLLRHCSRSLPCSSSAAAPPRPSTPPPVASPAMSPPAASPPPINSSPPMAASPPCMDMSSVSVPMPDSPPSLPSPSAGFSIHHSGSRRALRRCWVAWPSSLPIYAFFFLFFTFISTMSDL

Homology

[Close]

BLAST of CmaCh06G008090 vs. NCBI nr
Match: KAG6596882.1 (hypothetical protein SDJN03_10062, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-16
Identity = 68/105 (64.76%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 238 SSSAAAPPRPSTPPPVASPAMSPPAASPPPINSSPPMAASPPCMDMSSVSVPMPDSPPSL 297
           S +AAA PRPSTP PVASPAMSPPAASPP I SSPPMAASPP M MS VSVPMPDSPPSL
Sbjct: 27  SPAAAAAPRPSTPSPVASPAMSPPAASPPLIISSPPMAASPPSMGMSPVSVPMPDSPPSL 86

Query: 298 PSP----SAGFSIHHSGSRRALRRCWVAWPSSLPIYAFFFLFFTF 339
           PSP    SAGFSIHH G +  L          L      F F  F
Sbjct: 87  PSPGPGSSAGFSIHHGGYKAGLAAVLGGMAEVLTHMCILFSFLYF 131

[Close]

BLAST of CmaCh06G008090 vs. NCBI nr
Match: XP_038903480.1 (classical arabinogalactan protein 9-like [Benincasa hispida])

HSP 1 Score: 55.8 bits (133), Expect = 8.3e-04
Identity = 52/113 (46.02%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 236 PCSSSAAAPPRPSTPPPVASPAMS-PPAASPPPINSS---------PPMAASPPCMDMSS 295
           P  +SAAAPP PS+PPPVA+P  + PPAASPPP  S+         PPM ASPP M+ S 
Sbjct: 30  PGPASAAAPP-PSSPPPVAAPPTTPPPAASPPPTISTPPAAAPPAIPPMMASPPSMESSP 89

Query: 296 VSVPMPDSPPSLPS------------------------PSAGFSIHHSGSRRA 315
              PMPDSPPS P                         PSAGFSIH  G + A
Sbjct: 90  GPGPMPDSPPSPPGPSPSPMSMSPPTPAPAPSPPSPPPPSAGFSIHQGGYKAA 141

The following BLAST results are available for this feature:

BLAST of CmaCh06G008090 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G008090 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G008090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596882.1	1.9e-16	64.76	hypothetical protein SDJN03_10062, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038903480.1	8.3e-04	46.02	classical arabinogalactan protein 9-like [Benincasa hispida]	[more]

BLAST of CmaCh06G008090 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 149..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 238..303
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 243..274

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G008090.1	CmaCh06G008090.1	mRNA