CmaCh06G006960 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G006960
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	calcineurin B-like 3
Location	Cma_Chr06: 3503563 .. 3504676 (+)
RNA-Seq Expression	CmaCh06G006960
Synteny	CmaCh06G006960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCAGTTCATTAGAGGATTTTTTTTACTTCCCTACCAAGATGTGATCTTGACTTGTATAAGCAATCAAGAGGTCTTGACGATCCTGATCTTCTATCCAGGGAGACTGTGTATGTTTTTAATTCTCTTTTCTTTTCTTTGTGGATTGTGTACCTCTGAACTTTGTTAAATGATGCTAGTTTTCCATGATATGCAGTCAGTGTAAGTGAAATGGAAGCACTATATGAGCTTTTCAAGAAGAGAAGCAGCGCCGTGATTGATGATGGTCTGATCAACAAGGTATGTGCATCTCTTTCTGCCATTGGATAGGGATACTTTGATTTGTGGCTTTGGCAAAACTTTTTTTTTTCCTTCATAACAATATATATTGATCCTTGCAAAATTGAATGTACGTTATGTAAAGGGAAAGAGATAAACGTATAAAACATATGGAGCAGTTGCATTTATACTATGATTGGAACCTTTGTGTCTCTAACTATGTTCTTATAATGCCATGTTTTTAAGCAGCAAGGTGTTAAAGAGAGACGAGGTAAAGCTTTGTTCCCTGTGCTGAAGTTGTTGAGGAAGCTGATACAAAACATGAGGGAAGGATTGACAAGGAAAAGTGGAGAAACCTTGTTATGCCACATCCATCTCTCTTAAAGAACATGAATCACGTAAGTCAACCGTTTGTTCCAGTGAAACATCTCAAAATCAGTTTCTCGTTCTTGTTTTTGTGTAATGCCGTAAAGGGAAGCTCAAGAATGAACTTTAAGTGAATCTATCAGATCTAAATGTGCTATTTTTAGTCTTCTGATGAGGATTTACGCTCAATATTAGCAATGATTATGGGGTATTTTCATTGCTCTAGCTGTGTTATGTTATAATCTGGGGCATTTTGCTGAGCAGGGACATCACCACGACTTTCCCGAGCGATGTTGCCTGAGGTTGTGTTCATCATCTGCAGTTGAAGTGTCTACTATTTGATCACGGTTTGCACAATTGATGTATGTAGGCCATTTCTTGGAGGGGAAAATCTTGAATTTTCTCTTCGCATGGGTTGTTCCTCGAGTTGTAAAACACATTACTGTAAATACCACATTTTAAAATATTCATGAACTTTTAACTCTCTC

mRNA sequence

ATGCTGCAGTTCATTAGAGGATTTTTTTTACTTCCCTACCAAGATGTGATCTTGACTTGTATAAGCAATCAAGAGGTCTTGACGATCCTGATCTTCTATCCAGGGAGACTGTTCAGTGTAAGTGAAATGGAAGCACTATATGAGCTTTTCAAGAAGAGAAGCAGCGCCGTGATTGATGATGGTCTGATCAACAAGCAAGGTGTTAAAGAGAGACGAGGAAAAGTGGAGAAACCTTGTTATGCCACATCCATCTCTCTTAAAGAACATGAATCACGGACATCACCACGACTTTCCCGAGCGATGTTGCCTGAGGTTGTGTTCATCATCTGCAGTTGAAGTGTCTACTATTTGATCACGGTTTGCACAATTGATGTATGTAGGCCATTTCTTGGAGGGGAAAATCTTGAATTTTCTCTTCGCATGGGTTGTTCCTCGAGTTGTAAAACACATTACTGTAAATACCACATTTTAAAATATTCATGAACTTTTAACTCTCTC

Coding sequence (CDS)

ATGCTGCAGTTCATTAGAGGATTTTTTTTACTTCCCTACCAAGATGTGATCTTGACTTGTATAAGCAATCAAGAGGTCTTGACGATCCTGATCTTCTATCCAGGGAGACTGTTCAGTGTAAGTGAAATGGAAGCACTATATGAGCTTTTCAAGAAGAGAAGCAGCGCCGTGATTGATGATGGTCTGATCAACAAGCAAGGTGTTAAAGAGAGACGAGGAAAAGTGGAGAAACCTTGTTATGCCACATCCATCTCTCTTAAAGAACATGAATCACGGACATCACCACGACTTTCCCGAGCGATGTTGCCTGAGGTTGTGTTCATCATCTGCAGTTGA

Protein sequence

MLQFIRGFFLLPYQDVILTCISNQEVLTILIFYPGRLFSVSEMEALYELFKKRSSAVIDDGLINKQGVKERRGKVEKPCYATSISLKEHESRTSPRLSRAMLPEVVFIICS

Homology

[Close]

BLAST of CmaCh06G006960 vs. ExPASy Swiss-Prot
Match: Q8LAS7 (Calcineurin B-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=CBL2 PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.3e-06
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 37 LFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 41 VFSVSEIEALYELFKKISSAVIDDGLINKE 70

[Close]

BLAST of CmaCh06G006960 vs. ExPASy Swiss-Prot
Match: Q3HRP5 (Calcineurin B-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CBL2 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.3e-06
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 37 LFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 40 VFSVSEVEALYELFKKISSAVIDDGLINKE 69

[Close]

BLAST of CmaCh06G006960 vs. ExPASy Swiss-Prot
Match: Q8LEM7 (Calcineurin B-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=CBL3 PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.3e-06
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 37 LFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 41 VFSVSEIEALYELFKKISSAVIDDGLINKE 70

[Close]

BLAST of CmaCh06G006960 vs. ExPASy Swiss-Prot
Match: Q75LU8 (Calcineurin B-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CBL3 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.3e-06
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 37 LFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 40 VFSVSEVEALYELFKKISSAVIDDGLINKE 69

[Close]

BLAST of CmaCh06G006960 vs. ExPASy Swiss-Prot
Match: Q3HRP1 (Calcineurin B-like protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CBL6 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.5e-05
Identity = 23/30 (76.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 37 LFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          +F+V+E+EALYELFKK SSAV+DDGLINK+
Sbjct: 41 VFNVNEIEALYELFKKISSAVVDDGLINKE 70

[Close]

BLAST of CmaCh06G006960 vs. ExPASy TrEMBL
Match: A0A6J1KVG6 (uncharacterized protein LOC111498547 OS=Cucurbita maxima OX=3661 GN=LOC111498547 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-31
Identity = 75/78 (96.15%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MLQFIRGFFLLPYQDVILTCISNQEVLTILIFYPGRLFSVSEMEALYELFKKRSSAVIDD 60
          MLQFIRGFFLLPYQDVILTCISNQEVLTILIFYPGRLFSVSEMEALYELFKKRSSAVIDD
Sbjct: 1  MLQFIRGFFLLPYQDVILTCISNQEVLTILIFYPGRLFSVSEMEALYELFKKRSSAVIDD 60

Query: 61 GLINKQGVKERRGKVEKP 79
          GLINKQGVKERRGK   P
Sbjct: 61 GLINKQGVKERRGKALFP 78

[Close]

BLAST of CmaCh06G006960 vs. ExPASy TrEMBL
Match: A0A7J7NA76 (Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_037822 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.6e-07
Identity = 42/71 (59.15%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 1  MLQFIRG---FFLLPYQDVILTCISNQEVLTILIFYPGR--LFSVSEMEALYELFKKRSS 60
          MLQ I G    F       IL+CISN   L I  F  G+  +FSVSE+EALYELFKK SS
Sbjct: 1  MLQCIEGLKHLFASILSVAILSCISNPGALKIRKFLQGKQSVFSVSEVEALYELFKKISS 60

Query: 61 AVIDDGLINKQ 67
          AVIDDGLINK+
Sbjct: 61 AVIDDGLINKE 71

[Close]

BLAST of CmaCh06G006960 vs. ExPASy TrEMBL
Match: A0A0D6QRQ7 (Uncharacterized protein OS=Araucaria cunninghamii OX=56994 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.2e-04
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 35 GRLFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          G +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 39 GTVFSVSEVEALYELFKKISSAVIDDGLINKE 70

[Close]

BLAST of CmaCh06G006960 vs. ExPASy TrEMBL
Match: A0A103YJS3 (Calcium-binding EF-hand OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_011221 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.9e-04
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 18 LTCISNQEVLTILIFYPGRLFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          LT + + E+L         +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 27 LTSLEDPEILA-----RATVFSVSEIEALYELFKKISSAVIDDGLINKE 70

[Close]

BLAST of CmaCh06G006960 vs. ExPASy TrEMBL
Match: A0A0B2S691 (Calcineurin B-like protein 3 OS=Glycine soja OX=3848 GN=D0Y65_019118 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-04
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 19 TCISNQEVLTILIFYPGRLFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          T + N EVL         +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 28 TGLENPEVLA-----RETVFSVSEIEALYELFKKISSAVIDDGLINKE 70

[Close]

BLAST of CmaCh06G006960 vs. NCBI nr
Match: XP_023005611.1 (uncharacterized protein LOC111498547 [Cucurbita maxima])

HSP 1 Score: 145.2 bits (365), Expect = 3.4e-31
Identity = 75/78 (96.15%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MLQFIRGFFLLPYQDVILTCISNQEVLTILIFYPGRLFSVSEMEALYELFKKRSSAVIDD 60
          MLQFIRGFFLLPYQDVILTCISNQEVLTILIFYPGRLFSVSEMEALYELFKKRSSAVIDD
Sbjct: 1  MLQFIRGFFLLPYQDVILTCISNQEVLTILIFYPGRLFSVSEMEALYELFKKRSSAVIDD 60

Query: 61 GLINKQGVKERRGKVEKP 79
          GLINKQGVKERRGK   P
Sbjct: 61 GLINKQGVKERRGKALFP 78

[Close]

BLAST of CmaCh06G006960 vs. NCBI nr
Match: KAF6164056.1 (hypothetical protein GIB67_037822 [Kingdonia uniflora])

HSP 1 Score: 64.3 bits (155), Expect = 7.5e-07
Identity = 42/71 (59.15%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 1  MLQFIRG---FFLLPYQDVILTCISNQEVLTILIFYPGR--LFSVSEMEALYELFKKRSS 60
          MLQ I G    F       IL+CISN   L I  F  G+  +FSVSE+EALYELFKK SS
Sbjct: 1  MLQCIEGLKHLFASILSVAILSCISNPGALKIRKFLQGKQSVFSVSEVEALYELFKKISS 60

Query: 61 AVIDDGLINKQ 67
          AVIDDGLINK+
Sbjct: 61 AVIDDGLINKE 71

[Close]

BLAST of CmaCh06G006960 vs. NCBI nr
Match: KAF9868327.1 (hypothetical protein H0E87_026892 [Populus deltoides])

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-06
Identity = 38/58 (65.52%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 10  LLPYQDVILTCISNQEVLTILIFYPGR-LFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
           L P   VIL   +NQE L I  F  G  +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 142 LPPCGVVILIYTNNQEALKIPSFLQGETVFSVSEIEALYELFKKISSAVIDDGLINKE 199

[Close]

BLAST of CmaCh06G006960 vs. NCBI nr
Match: XP_040959772.1 (calcineurin B-like protein 2 [Gossypium hirsutum])

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-05
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 18 LTCISNQEVLTILIFYPGR--LFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          + C SNQEVL IL F   R  +FSVSE+EALYE FKK S+AVIDD LINK+
Sbjct: 1  MICASNQEVLLILNFLQERPFVFSVSEIEALYEHFKKISNAVIDDELINKE 51

[Close]

BLAST of CmaCh06G006960 vs. NCBI nr
Match: KVI10445.1 (Calcium-binding EF-hand [Cynara cardunculus var. scolymus])

HSP 1 Score: 54.7 bits (130), Expect = 6.0e-04
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 18 LTCISNQEVLTILIFYPGRLFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          LT + + E+L         +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 27 LTSLEDPEILA-----RATVFSVSEIEALYELFKKISSAVIDDGLINKE 70

[Close]

BLAST of CmaCh06G006960 vs. TAIR 10
Match: AT4G26570.1 (calcineurin B-like 3 )

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-07
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 37 LFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 41 VFSVSEIEALYELFKKISSAVIDDGLINKE 70

[Close]

BLAST of CmaCh06G006960 vs. TAIR 10
Match: AT4G26570.2 (calcineurin B-like 3 )

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-07
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 37 LFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 41 VFSVSEIEALYELFKKISSAVIDDGLINKE 70

[Close]

BLAST of CmaCh06G006960 vs. TAIR 10
Match: AT5G55990.1 (calcineurin B-like protein 2 )

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-07
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 37 LFSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          +FSVSE+EALYELFKK SSAVIDDGLINK+
Sbjct: 41 VFSVSEIEALYELFKKISSAVIDDGLINKE 70

[Close]

BLAST of CmaCh06G006960 vs. TAIR 10
Match: AT5G47100.1 (calcineurin B-like protein 9 )

HSP 1 Score: 49.3 bits (116), Expect = 2.3e-06
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 38 FSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          FSVSE+EALYELFK  SS+V+DDGLINK+
Sbjct: 27 FSVSEVEALYELFKSISSSVVDDGLINKE 55

[Close]

BLAST of CmaCh06G006960 vs. TAIR 10
Match: AT4G17615.1 (calcineurin B-like protein 1 )

HSP 1 Score: 47.8 bits (112), Expect = 6.8e-06
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 38 FSVSEMEALYELFKKRSSAVIDDGLINKQ 67
          FSVSE+EAL+ELFK  SS+V+DDGLINK+
Sbjct: 27 FSVSEVEALFELFKSISSSVVDDGLINKE 55

The following BLAST results are available for this feature:

BLAST of CmaCh06G006960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LAS7	2.3e-06	86.67	Calcineurin B-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=CBL2 PE=1 SV=2	[more]
Q3HRP5	2.3e-06	86.67	Calcineurin B-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CBL2 PE...	[more]
Q8LEM7	2.3e-06	86.67	Calcineurin B-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=CBL3 PE=1 SV=2	[more]
Q75LU8	2.3e-06	86.67	Calcineurin B-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CBL3 PE...	[more]
Q3HRP1	1.5e-05	76.67	Calcineurin B-like protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CBL6 PE...	[more]

BLAST of CmaCh06G006960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KVG6	1.6e-31	96.15	uncharacterized protein LOC111498547 OS=Cucurbita maxima OX=3661 GN=LOC111498547...	[more]
A0A7J7NA76	3.6e-07	59.15	Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_037822 PE=4 SV=1	[more]
A0A0D6QRQ7	2.2e-04	84.38	Uncharacterized protein OS=Araucaria cunninghamii OX=56994 PE=4 SV=1	[more]
A0A103YJS3	2.9e-04	61.22	Calcium-binding EF-hand OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_011...	[more]
A0A0B2S691	3.8e-04	64.58	Calcineurin B-like protein 3 OS=Glycine soja OX=3848 GN=D0Y65_019118 PE=4 SV=1	[more]

BLAST of CmaCh06G006960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005611.1	3.4e-31	96.15	uncharacterized protein LOC111498547 [Cucurbita maxima]	[more]
KAF6164056.1	7.5e-07	59.15	hypothetical protein GIB67_037822 [Kingdonia uniflora]	[more]
KAF9868327.1	3.7e-06	65.52	hypothetical protein H0E87_026892 [Populus deltoides]	[more]
XP_040959772.1	3.2e-05	66.67	calcineurin B-like protein 2 [Gossypium hirsutum]	[more]
KVI10445.1	6.0e-04	61.22	Calcium-binding EF-hand [Cynara cardunculus var. scolymus]	[more]

BLAST of CmaCh06G006960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26570.1	1.6e-07	86.67	calcineurin B-like 3	[more]
AT4G26570.2	1.6e-07	86.67	calcineurin B-like 3	[more]
AT5G55990.1	1.6e-07	86.67	calcineurin B-like protein 2	[more]
AT5G47100.1	2.3e-06	79.31	calcineurin B-like protein 9	[more]
AT4G17615.1	6.8e-06	75.86	calcineurin B-like protein 1	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G006960.1	CmaCh06G006960.1	mRNA