CmaCh06G006870 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G006870
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr06: 3433427 .. 3435896 (+)
RNA-Seq Expression	CmaCh06G006870
Synteny	CmaCh06G006870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAAATAGAGGTATCGAATCCGGTAATCTTAAGAAACCCAGAAAAAAAGTGAAGAGCGAAGCACCGGCGAGACCCGAATTATATACCTGATGAAGATGGACATGAAAAAATGATAATGAAAATCCCTTACAAATTTATTTATTTTTTAATTATCTAAAAATATTTAATTTTTTTAAGTTCTATTAAATTTATAATTCAAATGTAATTAATCATTTGATTTTTTAAAATTAAATTTATTACATACAAAATTTAAAACTTCTTAAATACTTATTATTTTATTTTGCCCCCAAATAATATTAAAAAAATCGATTCCATTGCTCTTTGGAATCAAAACGGCTCTTCTATAATTAATTATTTTCTCCAAATTAAAATAATATTTATTGACGTATGAACTCTTTTCTATATATATTTATGAACAAATATCAAAATCATGCATGAATTAAGACGTTGGAATTAATTTAATAAGTGGATATTTCCACATAAGTATTTTAATGATATTAATAAGTCGAATTTTTTTTCTCTCCATGATGTGTGTATGTATCAATTTTTTATTATAAATGAAAGACTTTTGTTCTTAATTTAAGATTAATATTTGAAAATTATTTTTTTAAGAACAACATTTTATCCAAGTAAATAATTTAGAAATAAATTTTTAGTTAATTTCAATTTATTTAAATTTAAATAAAATAATTAAAAGTTAAGTAATAATTACTCACAAAAATTTATTGAGATCTACTCTATAAAATATTTATCGTTATAACTCGAACATCTTCCTCGAACAGAGAATACAAAAATTTAAAAGAAATTTATAATTTAGTTTTATACAAACTCGTTGTATGGAATACGTCACACATATGTCTCTATATAAAGAATTTGGATCAAAATATTTATAACTATTATAAAATGGACTGTATCAGTAATATTACTTGAATACAATTGCACTAATAAATTTAAATTTTCATATAAGGAATAATATTAAACTATAAATAAAATTATCAAAATTATTATTAAAAATTGGATAGTTAATCCTCACAGCTTTTGGCATGATTCAAATAATTTATTTTGAATGAAACACTAACCATCAAATTTTAGAAAAGTATTTAAAATATCCTCACATACCATCTCCATCGTTGACAATCATCACCCACCAGTAGCGACTATCGATATCGTTCGTCAATTACTCTGATGACCATCTTTAGCGACCACCACATACCCACCTACAAAGACCATAATACACCCTTCGGTAGTGACCATCTCTAATAACCATCATTTCAATATTCATCGACTGCCACCGTGCACCCACTACTAAAGGTCGTGTGTGAAGATAATTCTGGTGACAACCACGCACCTATCATCGACCATGGCAACCACAATTGTTAAACCATCGTGCACCCATTGCTAATAACCATATTTGATGACCACTACTGGTGACCATCACATACCCACCATTAGTGCCCATCTCCAGCAACCACTAAGGTGACACATTCAATGACATTGTCGACAATAATTCTTGTTACCACCTCCAGTAAGTATCGCTAGGGACAACACCAACCACCATCACGGGTGATGGGCCGTCGTAATAGTTAATTATAGAGTTTTAAATGCAAATTTAAATTTATAATTATAGCCAATCAAACAAAATTTAGTATAAAAAACCTTTGAAATATGTAAAAAAAAAAAAAAAACTAATTTAAGCATTTTAAAAATGATTTATGAGATATAAATAGTTGATTTTCATAAATTAATGGGCTAAAACGATAAAAATATTTTTAAATATTTTAAAAACTTTGAAGGATTTTAATAAAATTTTATAAACTTTATTTTTTATAAAATAAAATACTAATCATTTTCATCTAAAATTAATTATAAATAATTATAAATTATAAAAATTTAAAGATATTATTGAGTCATTTTGGGGTATTTTTATTAATTATAAAAAAAAAAAAAAAAGGAATTTAATTAGAAGAGTTTTTATTTTAGAGGGGAGTTGAATCTGATGGTGCCCTCCCACCAAACAGCTCCACCTAATCCAACGGCCACGTCTTCCTCCCCTCCTCCTCCGAAAGAACAACTCCTTTTCCCCTTTTTCTTCCCCAACCAAAACCAAATCCCTAACGCTTTCCGGAAACTGTTGCCTTCATTTCAAGCCTCTCCACAGCCGCCATCGCCTTAAAAACCACCTCCATCTTCCTTCCTTCCTCCCTCCTCTTTCTCTCCCTCGCCATTTCCAGCCACAAATTCACAGCAACGAGCAAGATCCGGCCTCTGCGACGATGTGCTGCTTTGGAAAGGTGTGCATGTTCTGCTCTTGCCTAGTTCTGGTGGCCGTCGCCATCGGATTGCTCTTCGGTTTCGGAGTTTTTAAAGACGGATTCCATAAGATTAAGGATAAGGTCGATTTCTGCGATGGAGGTCTCTGCGGCGGTGGAAGACCTTTCTTCGCTGCGCCTCCTCGTCGCTTCTAG

mRNA sequence

ATGGGAGAAATAGAGGTATCGAATCCGCTCCACCTAATCCAACGGCCACGTCTTCCTCCCCTCCTCCTCCGAAAGAACAACTCCTTTTCCCCTTTTTCTTCCCCAACCAAAACCAAATCCCTAACGCTTTCCGGAAACTGTTGCCTTCATTTCAAGCCTCTCCACAGCCGCCATCGCCTTAAAAACCACCTCCATCTTCCTTCCTTCCTCCCTCCTCTTTCTCTCCCTCGCCATTTCCAGCCACAAATTCACAGCAACGAGCAAGATCCGGCCTCTGCGACGATGTGCTGCTTTGGAAAGGTGTGCATGTTCTGCTCTTGCCTAGTTCTGGTGGCCGTCGCCATCGGATTGCTCTTCGGTTTCGGAGTTTTTAAAGACGGATTCCATAAGATTAAGGATAAGGTCGATTTCTGCGATGGAGGTCTCTGCGGCGGTGGAAGACCTTTCTTCGCTGCGCCTCCTCGTCGCTTCTAG

Coding sequence (CDS)

ATGGGAGAAATAGAGGTATCGAATCCGCTCCACCTAATCCAACGGCCACGTCTTCCTCCCCTCCTCCTCCGAAAGAACAACTCCTTTTCCCCTTTTTCTTCCCCAACCAAAACCAAATCCCTAACGCTTTCCGGAAACTGTTGCCTTCATTTCAAGCCTCTCCACAGCCGCCATCGCCTTAAAAACCACCTCCATCTTCCTTCCTTCCTCCCTCCTCTTTCTCTCCCTCGCCATTTCCAGCCACAAATTCACAGCAACGAGCAAGATCCGGCCTCTGCGACGATGTGCTGCTTTGGAAAGGTGTGCATGTTCTGCTCTTGCCTAGTTCTGGTGGCCGTCGCCATCGGATTGCTCTTCGGTTTCGGAGTTTTTAAAGACGGATTCCATAAGATTAAGGATAAGGTCGATTTCTGCGATGGAGGTCTCTGCGGCGGTGGAAGACCTTTCTTCGCTGCGCCTCCTCGTCGCTTCTAG

Protein sequence

MGEIEVSNPLHLIQRPRLPPLLLRKNNSFSPFSSPTKTKSLTLSGNCCLHFKPLHSRHRLKNHLHLPSFLPPLSLPRHFQPQIHSNEQDPASATMCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPFFAAPPRRF

Homology

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BLAST of CmaCh06G006870 vs. ExPASy TrEMBL
Match: A0A1S3BL26 (uncharacterized protein LOC103491008 OS=Cucumis melo OX=3656 GN=LOC103491008 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPFFAAPP 154
           MCCFGK+CM C+CL+LV VAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPFF APP
Sbjct: 1   MCCFGKLCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPFFPAPP 60

Query: 155 RRF 158
            RF
Sbjct: 61  PRF 63

[Close]

BLAST of CmaCh06G006870 vs. ExPASy TrEMBL
Match: A0A6J1EWB7 (uncharacterized protein LOC111438773 OS=Cucurbita moschata OX=3662 GN=LOC111438773 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-24
Identity = 54/67 (80.60%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLC----GGGRPFF 154
           MCCFGKVCM C+CL+LV VA+G LFGFGVFKDGFHKIKDK DFCDGG+C    GGGRPFF
Sbjct: 1   MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGRPFF 60

Query: 155 AAPPRRF 158
           AAPP RF
Sbjct: 61  AAPPPRF 67

[Close]

BLAST of CmaCh06G006870 vs. ExPASy TrEMBL
Match: A0A0A0L2S1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045170 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.3e-20
Identity = 50/62 (80.65%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGG--RPFFAA 154
           MCC GKVCM C+CL+LV VAIGLLFGFGVFKDGFHKIKDKVDFCDGG CGGG    F  A
Sbjct: 1   MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPA 60

[Close]

BLAST of CmaCh06G006870 vs. ExPASy TrEMBL
Match: A0A6J1E285 (uncharacterized protein LOC111025796 OS=Momordica charantia OX=3673 GN=LOC111025796 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.0e-18
Identity = 46/62 (74.19%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPFFAAPP 154
           MCC GK+CM C CL+ VAVA+GLLFGFGVFKDGFHKIKDKVDFCDG LC GG  F     
Sbjct: 1   MCCGGKLCMLCVCLIAVAVAVGLLFGFGVFKDGFHKIKDKVDFCDGPLCXGGSSFLGFLF 60

Query: 155 RR 157
           RR
Sbjct: 61  RR 62

[Close]

BLAST of CmaCh06G006870 vs. ExPASy TrEMBL
Match: W9QQT2 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_023747 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.1e-17
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCD----GGLCGGGRPFF 154
           MCC G++CM C+CL+L+ + IGLLFGFGVFK+GFHK+KD VDFCD    G  CG GRPFF
Sbjct: 1   MCCGGRMCMLCTCLILLVILIGLLFGFGVFKNGFHKLKDTVDFCDPTVHGSFCGTGRPFF 60

[Close]

BLAST of CmaCh06G006870 vs. NCBI nr
Match: KAG6596774.1 (hypothetical protein SDJN03_09954, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-48
Identity = 94/107 (87.85%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 51  FKPLHSRHRLKNHLHLPSFLPPLSLPRHFQPQIHSNEQDPASATMCCFGKVCMFCSCLVL 110
           F   + RHRL+ HLHLPS LPPLSLPRHF PQIH+NEQDPASATMCCFGKVCMFCSCLVL
Sbjct: 19  FDDHYCRHRLQKHLHLPSSLPPLSLPRHFLPQIHTNEQDPASATMCCFGKVCMFCSCLVL 78

Query: 111 VAVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPFFAAPPRRF 158
           VAVAIGLLFGFG+FKDGFHKIKDKVDFCDG LCG GRPFFAAPPRRF
Sbjct: 79  VAVAIGLLFGFGIFKDGFHKIKDKVDFCDGDLCGRGRPFFAAPPRRF 125

[Close]

BLAST of CmaCh06G006870 vs. NCBI nr
Match: KAG7028302.1 (hypothetical protein SDJN02_09483, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.4 bits (516), Expect = 1.5e-48
Identity = 93/101 (92.08%), Postives = 96/101 (95.05%), Query Frame = 0


Query: 57  RHRLKNHLHLPSFLPPLSLPRHFQPQIHSNEQDPASATMCCFGKVCMFCSCLVLVAVAIG 116
           RHRL+ HLHLPS LPPLSLPRHF PQIH+NEQDPASATMCCFGKVCMFCSCLVLVAVAIG
Sbjct: 64  RHRLQKHLHLPSSLPPLSLPRHFLPQIHTNEQDPASATMCCFGKVCMFCSCLVLVAVAIG 123

Query: 117 LLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPFFAAPPRRF 158
           LLFGFG+FKDGFHKIKDKVDFCDG LCG GRPFFAAPPRRF
Sbjct: 124 LLFGFGIFKDGFHKIKDKVDFCDGDLCGRGRPFFAAPPRRF 164

[Close]

BLAST of CmaCh06G006870 vs. NCBI nr
Match: XP_008449006.1 (PREDICTED: uncharacterized protein LOC103491008 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-26
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPFFAAPP 154
           MCCFGK+CM C+CL+LV VAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPFF APP
Sbjct: 1   MCCFGKLCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPFFPAPP 60

Query: 155 RRF 158
            RF
Sbjct: 61  PRF 63

[Close]

BLAST of CmaCh06G006870 vs. NCBI nr
Match: XP_038905566.1 (uncharacterized protein Os04g0629400 [Benincasa hispida])

HSP 1 Score: 124.4 bits (311), Expect = 8.7e-25
Identity = 57/70 (81.43%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLC-------GGGR 154
           MCCFGKVCM C+CL+LV VAIGLLFGFGVFKDGFHKIKDKVD+CDGGLC       GGGR
Sbjct: 1   MCCFGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDYCDGGLCGGGGGGGGGGR 60

Query: 155 PFFAAPPRRF 158
           PFFAAPP RF
Sbjct: 61  PFFAAPPPRF 70

[Close]

BLAST of CmaCh06G006870 vs. NCBI nr
Match: XP_023553402.1 (uncharacterized protein LOC111810828 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-24
Identity = 54/64 (84.38%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGGRPFF-AAP 154
           MCCFGKVCM C+CL+LV VA+G LFGFGVFKDGFHKIKDK DFCDGG+CGGGRPFF AAP
Sbjct: 1   MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGGGRPFFAAAP 60

Query: 155 PRRF 158
           P RF
Sbjct: 61  PPRF 64

[Close]

BLAST of CmaCh06G006870 vs. TAIR 10
Match: AT3G13275.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-12
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 95  MCCFGKVCMFCSCLVLVAVAIGLLFGFGVFKDGFHKIKDKVDF-CDGGL-CGGG 147
           MCC G++CM C+CL+LV +AIG LFGFGVFKDGFHKI + +   CD    CGGG
Sbjct: 1   MCC-GRICMLCTCLLLVVIAIGFLFGFGVFKDGFHKIHESIHLECDPRFGCGGG 53

The following BLAST results are available for this feature:

BLAST of CmaCh06G006870 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G006870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BL26	1.3e-26	88.89	uncharacterized protein LOC103491008 OS=Cucumis melo OX=3656 GN=LOC103491008 PE=...	[more]
A0A6J1EWB7	1.6e-24	80.60	uncharacterized protein LOC111438773 OS=Cucurbita moschata OX=3662 GN=LOC1114387...	[more]
A0A0A0L2S1	5.3e-20	80.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045170 PE=4 SV=1	[more]
A0A6J1E285	5.0e-18	74.19	uncharacterized protein LOC111025796 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
W9QQT2	1.1e-17	67.19	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_023747 PE=4 SV=1	[more]

BLAST of CmaCh06G006870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596774.1	1.1e-48	87.85	hypothetical protein SDJN03_09954, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7028302.1	1.5e-48	92.08	hypothetical protein SDJN02_09483, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_008449006.1	2.7e-26	88.89	PREDICTED: uncharacterized protein LOC103491008 [Cucumis melo]	[more]
XP_038905566.1	8.7e-25	81.43	uncharacterized protein Os04g0629400 [Benincasa hispida]	[more]
XP_023553402.1	1.5e-24	84.38	uncharacterized protein LOC111810828 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh06G006870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13275.1	1.1e-12	62.96	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36753	TRANSMEMBRANE PROTEIN	coord: 95..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G006870.1	CmaCh06G006870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane