CmaCh06G006800 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G006800
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr06: 3401628 .. 3401900 (+)
RNA-Seq Expression	CmaCh06G006800
Synteny	CmaCh06G006800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCCCTAGCAAAGTGTGGAAGTTCAGATTCCATTTCTTGGCTGCTCTAACCCTATGCCTTACACTCTTCTCCCTCATCCTCCTCGCTCCTAGATTGCTCTCTCTCGTTGCCTACTTTTGGCCTCTCTTCCTCTCCACCGCTCTCTTCCTCCTCGCTGTCCTTCTTTTTGCCAACGCCTCTCTCCCGCCGCCGGATAAAACCGGCGAAGGCCTTCTCAACTACGTCGCCGGACACCTCGACCTAGACGCCTCGCTCAAGACCGATTAG

mRNA sequence

ATGGAGATCCCTAGCAAAGTGTGGAAGTTCAGATTCCATTTCTTGGCTGCTCTAACCCTATGCCTTACACTCTTCTCCCTCATCCTCCTCGCTCCTAGATTGCTCTCTCTCGTTGCCTACTTTTGGCCTCTCTTCCTCTCCACCGCTCTCTTCCTCCTCGCTGTCCTTCTTTTTGCCAACGCCTCTCTCCCGCCGCCGGATAAAACCGGCGAAGGCCTTCTCAACTACGTCGCCGGACACCTCGACCTAGACGCCTCGCTCAAGACCGATTAG

Coding sequence (CDS)

ATGGAGATCCCTAGCAAAGTGTGGAAGTTCAGATTCCATTTCTTGGCTGCTCTAACCCTATGCCTTACACTCTTCTCCCTCATCCTCCTCGCTCCTAGATTGCTCTCTCTCGTTGCCTACTTTTGGCCTCTCTTCCTCTCCACCGCTCTCTTCCTCCTCGCTGTCCTTCTTTTTGCCAACGCCTCTCTCCCGCCGCCGGATAAAACCGGCGAAGGCCTTCTCAACTACGTCGCCGGACACCTCGACCTAGACGCCTCGCTCAAGACCGATTAG

Protein sequence

MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLDLDASLKTD

Homology

[Close]

BLAST of CmaCh06G006800 vs. ExPASy TrEMBL
Match: A0A0A0L7E9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.7e-27
Identity = 72/91 (79.12%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEIPSKV KFRFH L  L L LTLFSL LLAP  LSL+AYFWPLFLSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLDLD-ASLKTD 91
           SLP PDK  EGLL+YVAGH DLD +SLK+D
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 91

[Close]

BLAST of CmaCh06G006800 vs. ExPASy TrEMBL
Match: A0A371EZD3 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_49244 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.4e-19
Identity = 62/98 (63.27%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEIP KV KFRFHFL AL  CLTLFSLIL+APR ++L+AYFWPLFLSTA+ L  V  FA 
Sbjct: 1  MEIPEKVLKFRFHFLGALLFCLTLFSLILMAPRFITLLAYFWPLFLSTAVVLALVFFFAK 60

Query: 61 AS-LPPPDKT-----GEGLLNYVAGH--LDLDASLKTD 91
           S LP  D T     G+GLL+YVAGH  L LD   K+D
Sbjct: 61 TSPLPSADATSFHNAGQGLLDYVAGHHDLPLDTRRKSD 98

[Close]

BLAST of CmaCh06G006800 vs. ExPASy TrEMBL
Match: M5WI68 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.7e-19
Identity = 51/79 (64.56%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPLFLSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 80
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEASGEGLLDYVAG 79

[Close]

BLAST of CmaCh06G006800 vs. ExPASy TrEMBL
Match: A0A314XNV4 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_25186 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.7e-19
Identity = 51/79 (64.56%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPLFLSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 80
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEPSGEGLLDYVAG 79

[Close]

BLAST of CmaCh06G006800 vs. ExPASy TrEMBL
Match: A0A5E4FSR9 (PREDICTED: transmembrane OS=Prunus dulcis OX=3755 GN=ALMOND_2B021217 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.7e-19
Identity = 51/79 (64.56%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPLFLSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 80
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEASGEGLLDYVAG 79

[Close]

BLAST of CmaCh06G006800 vs. NCBI nr
Match: KAG7028299.1 (hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 170.6 bits (431), Expect = 6.0e-39
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEIPSKVWKFRFHFLAALTLCLTLFSL+LLAPRLLSLVAYFWPL LSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLDLDASLKTD 91
          ASLPPPDKTGEGLLNYVAGHLDLDASLKTD
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLDLDASLKTD 90

[Close]

BLAST of CmaCh06G006800 vs. NCBI nr
Match: KAG6596766.1 (hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEIPSKVW+FRFHFLAALTLCLTLFSL+LLAPRLLSLVAYFWPL LSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLDLDASLKTD 91
          ASLPPPDKTGEGLLNYVAGHLDLDASLKTD
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLDLDASLKTD 90

[Close]

BLAST of CmaCh06G006800 vs. NCBI nr
Match: KGN56016.1 (hypothetical protein Csa_010324 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-26
Identity = 72/91 (79.12%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEIPSKV KFRFH L  L L LTLFSL LLAP  LSL+AYFWPLFLSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLDLD-ASLKTD 91
           SLP PDK  EGLL+YVAGH DLD +SLK+D
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 91

[Close]

BLAST of CmaCh06G006800 vs. NCBI nr
Match: KAG6577526.1 (hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015588.1 hypothetical protein SDJN02_23224, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.1 bits (292), Expect = 7.9e-23
Identity = 66/87 (75.86%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEIP KV KFRFH +AAL L L LFSL+LLAP+ LSL+A+FWPL LSTALFLLAVLLF N
Sbjct: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLD--LDA 86
           SLP PDK  EGLLNYVAGH D  LDA
Sbjct: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 87

[Close]

BLAST of CmaCh06G006800 vs. NCBI nr
Match: RDX71417.1 (hypothetical protein CR513_49244, partial [Mucuna pruriens])

HSP 1 Score: 104.0 bits (258), Expect = 6.9e-19
Identity = 62/98 (63.27%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEIP KV KFRFHFL AL  CLTLFSLIL+APR ++L+AYFWPLFLSTA+ L  V  FA 
Sbjct: 1  MEIPEKVLKFRFHFLGALLFCLTLFSLILMAPRFITLLAYFWPLFLSTAVVLALVFFFAK 60

Query: 61 AS-LPPPDKT-----GEGLLNYVAGH--LDLDASLKTD 91
           S LP  D T     G+GLL+YVAGH  L LD   K+D
Sbjct: 61 TSPLPSADATSFHNAGQGLLDYVAGHHDLPLDTRRKSD 98

[Close]

BLAST of CmaCh06G006800 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-12
Identity = 35/79 (44.30%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 1   MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
           MEI +K+ ++RFHF+  + + + + SL+  APR+L+++AYFWPLF STA FL   + F  
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  ASLPPPDKTGEGLLNYVAG 80
                 + TGE L++YVAG
Sbjct: 182 FQQLSEEATGERLMDYVAG 200

[Close]

BLAST of CmaCh06G006800 vs. TAIR 10
Match: AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 3.1e-09
Identity = 42/106 (39.62%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 1   MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
           ME   K+ KF+   + A  L L   +L+  +P  L++++YFWPLFLSTALFL AV  FA 
Sbjct: 1   MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61  ASLPPPDKT------------GEGLLNYVAG--HLDL--DASLKTD 91
            S  P   T             EG+L+YV G  H D+  D+  K D
Sbjct: 61  TSDLPVSSTIIPGEGAGLKVAAEGILDYVVGGQHEDILFDSFTKLD 106

The following BLAST results are available for this feature:

BLAST of CmaCh06G006800 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G006800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7E9	5.7e-27	79.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1	[more]
A0A371EZD3	3.4e-19	63.27	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_49244 P...	[more]
M5WI68	5.7e-19	64.56	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1	[more]
A0A314XNV4	5.7e-19	64.56	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_251...	[more]
A0A5E4FSR9	5.7e-19	64.56	PREDICTED: transmembrane OS=Prunus dulcis OX=3755 GN=ALMOND_2B021217 PE=4 SV=1	[more]

BLAST of CmaCh06G006800 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028299.1	6.0e-39	97.78	hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6596766.1	1.3e-38	96.67	hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN56016.1	1.2e-26	79.12	hypothetical protein Csa_010324 [Cucumis sativus]	[more]
KAG6577526.1	7.9e-23	75.86	hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sorori...	[more]
RDX71417.1	6.9e-19	63.27	hypothetical protein CR513_49244, partial [Mucuna pruriens]	[more]

BLAST of CmaCh06G006800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16400.1	1.8e-12	44.30	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G13175.1	3.1e-09	39.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125:SF4	PROTEIN, PUTATIVE-RELATED	coord: 1..84
None	No IPR available	PANTHER	PTHR34125	OS01G0762900 PROTEIN	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G006800.1	CmaCh06G006800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane