CmaCh06G006670 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G006670
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA-directed RNA polymerases I and III subunit RPAC1
Location	Cma_Chr06: 3307776 .. 3320576 (+)
RNA-Seq Expression	CmaCh06G006670
Synteny	CmaCh06G006670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCGTCGCCTCGTCTTCCGCTGTTTTTGCCGCCTCGTCCTTCTCCGCCGCCGTCAGGAGGCAGCAGCCGAACCCCTCCACCATATCATACCAAGGCCTCCGCCCACTCCCGGGGATCAAATCCAGCCGCAGCCTTGCAGCCGTGAAGAGCCCAAGATCCTTGGTGGTGAAGGCAGAGCTGAACCCATCAGTGGTGATAAGCCTGAGCACAGGGCTGTCCCTGTTCCTGGGGAGGTTCGTGTTCTTCAACTTCCAAAGGGAGAATGTGAGCAAGCAAGTGCCGGAGCAAAATGGGGTGACCCATTTCGAGGCAGGCGATGTGAGGGCGAAGGAGTATGTTAGCTTGTTGAAATCTAACGATCCTGTTGGGTTTAATATTGTTGATGTTCTTGCTTGGGGCTCTATTGGCCATATCGTTGCTTATTATATCTTGGCCACTTCTAGCAATGGCTATGATCCCAAGTTCTTCTAATTGTGGTTTGTATAGCTATTATATCAAATCAATCTCTGCTTTAAACTTAATATCTCTAATGGGGTTTTTGTGGAATGATTGGGAAAAAGAAGGTGGGGTAGTTACTTGTTTGAGTATCATTATTATTGCAATGGTTTCATTTTCGATGTTATTATCTTATTATTGTAATGGTTTCTTTTGATAATTGTTTCGTTGTCGCGGACAGTATAGATGACATGTACAAATGACACGAGATAGACGAATGGGTAGGTAAACGTATGTTTAGGAAGGCAATAGAGATAGTTCAAGGGCTAGAGAGCATCCATGCAGGGTAGGTGCTCGTAGGTGTTGGATACTAGTAACCATATTAGATGAAAATAGGTTGTGATTTCCATGATGCAAATAAAATAGTGGCGACAAACAATTGTTGCTATCAAGCTATGTCAAGGGTCAAGACAGAAGTGTAAAGATACAAAAACAGGATGGTGCATGTAACAGCCTAAACTCACCGCTAGCATACATTATCTTATTTGGGATTTCCCTCAAGTTTTTTTAAACGAGTCTGTTGAGGGAGATTTTCATACCTTATAAAAAAATGTTTCGTTCTCATCCCCAACAGATATGCGATCTCACAATCCACCCTCTTCAGGGTCCTGCGTCCTAGCTTACCCTCGTTCCTCTTTCAATCAATGTGGGAGCTCACAGTGCACATCTAACACATTAATAAGAGTGTTTGATAAAGCCAAGCTAAGACACGAACAAAAAACTAAGCTACAATGTCTTCAATAGGATTAGTGAGAAATTCAATGGACGAGGACCTAAGCCATTGCCTCCGAAGTTGGAGTTGCTTATACATTGCATCATGAAGTCAAACTTCTACACGATATGCAAACATAATTTGGAATAAACACGAAAGGATTCATGTTTTAATAGTGTTTAAATAGATAGATATTCAAACGTTTTAAATGATTTTTTTTTTGAATCCGTTCTTGATGAACATATATGAGGGTAGCTCTTTATGGTATAAATTTGAAATTTAAGATGTATAATTATATTAAAAGAGAGATAAAATAATATTGTAAATAATTAAAATTCAATTATTAAATCGGTTACTAGAAATACTCTTATGATTTAATGCCTTGTTTACCTGATCTCTCCAACTATTATTTCTTCTCTTTCAAAGCCATCGATTCTCTGCATTCCACATTCTTGCACCCATCGTCAAGAATTACAGAGGGGATCTCTGAGGTAAATCAAGTTCTATCCCTTTTCATTTTCCAGATTCAAACACTTTCAAGTTTTCTTTCTTGTTAATTCGATTCGATTCGATTTAGGTTTATCGAGCTAGGGGTTTCTCTGGTTTGTGCGACTGCTTTTTCGTTCTTGTTTTACGAATCTAAAGAACTGTTTTCCATTTTCTTTGCGTTTGAAGGGCCGAGGAGACGAGGGAAAAGTCTAGAGATGACTACTGCAGCTCGACCCACGTGGGCACCGGCTAAAGGTGGAAATGAACAAGGTGGCACTCGAATTTTTGGCCCATCACAGAAATATTCCTCCAGAGACATCGCTTCTCATACGACCTTGAAACCCAGGTGCGTATATTTAAGAAATATAATTCTTAGTTGTATTTGGAAGATGGGGCTGAGGGTGCACTTACTATAGTTTGTTGATCGCGTTTGTTCATTAACTTTTCGTGAAGTTGTGTTCTTTGTACAAGGTCTGTCGTTCTTGGTTGTGTTTAATCGTCTATGTGTTTCGACTTCTGAGGGATAATGATTGTACATCCATAATGAACTCGTTGGGGTCTTTGTTTATGATGTGCACTGAGTTTTCTAGTGAGTGTAATGTTCTTAACTGGAATTCTGAGAACTAAATTGGTTTATGTGTGTGCCTTTCAAGTGATTCCATCTTAGGGTAGTTGGTTTTAATGTGGGTGTGATCTGTTGAACAGAATTTTCATTCATTTTACTTGATCTTTGCCAAGGTGAACTTTTTTTTGGATTGTTGGATTCTGATGTTTCCACTTCTTGGATTATGTTAATGGCCCCTACCCACCAATTCTCAAGGAACTTTGCTTACTCTTAGGTTTAACTCCTGGAGACAACAAAGGTTTTTGTACATTAAAAAACTTTCGCCTTATGGTTGAACTCCAAACTTTTGGGGGAGTCTCTCTAACGTCCCGAGTCCTTACCTCTAGGATCACTGTGGGTGTTAAGCCAAGGTGAAACTTAGAATGATGTTAATTGATTGGCTTTCACTGCTGGTTATCCGCATTTATTTTTCTTCACTAAGCAGGGTAATTACCAATTTAATACATAGTATAATTCCTCTAACTCTGTAGATGAATTTCTATTGTATGAACGAAATTATAGAAGGGGATTTAAGGGAGTTACAAATAAATAAAACGTTTTCATTGGTGTGTATGGAAGTTAAAAGAAAGAATTGAAGGTAAGATTTGACTTAGTATTCCATGAGGAGTTTGAAGGGACAATTGAGTCCAAGATTTGAGAAATGGTTCTTTTTTCGAAGTTATAGATTCTTCTTTTACGTTCCAACCAAATATGTCATAGACTTCCAGGATAAATGTCAGCATTCAGTCATAGAATTTCTCTTTAGTGATCATATAGAAAATTGATGAACATTTAATGAATCAAGTAGAAAAGGGAAAATTGAATTGGCAAAGGTTGAAGATGAAGCCCCCAAAGCTTGACCATGTATTCCACCACTAGTTTTGCAAAGACAGCTGGAGCTGGAGCTGCTGAAATTGAAGTTGGTAGAGTCATTGGAGTGTCTTTTGGGATCTTGTTATTTTGGCTTAAACCTCCAAGCCGAAGGTGCTGTTTACCGTCCAGGAAGGAAGGACCTCCATAACATTATACTAAAGGCAAGGAGGAGCTCTGGCTTGCCCTCAGTGAGATGATCGAAGAAAGATTTAATTTTTTACCTCCACAAACTTTGCAATAAATTACATTCTTGCCTATCACTTCTATCTAACCATTCAATGAATCCTTCACAAACGTCATGAACAGCTTTAAAGTCTCTATATTGGAGAAGAGACTGCCATCAAAAAGCTCACACAATCGTAGCTAATCTGTACTTTAACCTATTATTACAAATGAGGCATATCAGCCATGTCTCAAAATGAGAATTGACTAATCGATTTATTATTGGCTAATGGCTATTTTTCTTTGTTTTATGTTTCCTTGGATATGGTGGTGTTACTTTTCTTCCATGATTTTAAGTCTCTAATCACTTGTCATTAATGATGCATGTAGGAAGGAAGGACAAGATACCCATGATGAATTGCAAAGGAGGAATCTCAGGGACGAGTTAGAAGATCGTGAAAGGAGGCATTTTTCATCAAAGAATAAATCATATGGTAAAGACATCCATTCTTTAGAAAAATATAGAATAATTTTTTTGTTTGTTTTCGTATCATTTCGTATGGTTTTGTTCAAATATCCTTTTTCCATACTGTTGTATGACATGTTTGCAACGAGTTGATCATGTTTCACTTGCATAATTTGCAGATGATAGAGATCATAGAAAAGGAAGCCAACTTCTGTTAGAAGGTTAATTCATCAGTTTCTGTATGCTTACATTTATTAACACATTCAGTAATTGTTTACTTAACCAGTTGTTATATATGTTTATTAGGCGGAAAGAGAGATATTGAAGATCGTATTATTCCACGAAGTTTAGATGCTGACGATTCTGATGTGGACGTGAAAAGTGACAACGAGAGGTTGGTTGGTTTGCTGGTTGGCTGGTTGGCTGGTTGGCTGGCTTTCCATTTTATTAATTTACTAATAAAACTATTTTCCTAGCCTTTTTTCTCTATACTTATTAGAGATAGCTTTAATTGCTTCGGCTTTTTATAATTTGAATCCTTGGTCCAAGATCTGGTAGACTAGTTGTATTGGGGTTGAGTATTGAAGTATCTCTAATGTTGTATAGCAGTGACGATGATGAGGATGACGATGATGAGGATGATACTGAAGCTCTTTTGGCAGAGCTGGAACAAATAAAGAAGGAAAGAGCGGAGGAGAAGCTTCGAAAGGTGAGCCTTTTGTCTATCTAGATAGCGTCACGATCTGAGTTGTGCTTGCAGAACCTTTATTTTTCTCCAAGATTTAAAAAGAATGCACCATGAGTCAAGTGATTAGTAGCTGGGATCACTTCAAGTGGTCGAATCTTTTAAGACTAACGAGCTCTGAAATGCAGAGTTTAAATTTGGTTTCATCAGTTGCTTAAATCTGCATTACGATGTATAGGAAAGACAAGAGCGAGAGGAAGAGCTTAAAGTCAAGGAAGCGGAGTTACTCCGAGGAAATCCACTGCTTAACGAGCAACCCGCCTCTTTTAGTGTCAAAAGAAGGTCAGTTGGCCTAATTTAACCATTTTTTCACAACTACTATGAACATCTATTCTGATGATGCAACTTCCTGTTGGCTTTTGGGTTAGATGGGACGATGATGTTGTGTTCAAGAATCAGGCCCGTGGCGAAACAAAGACTCCTAAGCGCTTTATAAACGATACCATCAGGAACGACTTCCACCGAAAATTCTTGCACAAGTACATGAAGTAACATGGTTATCAAAATCTACTGGCGTTAAAGGATTCAAGTAAGTTCGAGTGGAGACTAAAACTGTATATTTGTTTTATCCGCATTACATAATTCGTAGTGACCTTCAGGTACCAGCCTCTATGAAATATGCATTGAATATTTTCAGTTTGCCTTCTGAATTAGATGAACTATAAGGATCCAAAACTATGTCAAACGAATGATTATTAAAATGCTTTCATGAGAACCTGTCTTAGCTCATACTTTAAATAGCAATAATGATGGTTGATCTCCCAAATATTGGATTGGCTAGGACCCTGTACTTCAAATACTGTAGCCGAGGACCCTGGCTAGGAGAATCCAGACTTCTTGTAAGCCACAGTTCTTTCACCAAATAGAGCTTTGCAAGTTGAAACATGTATACCGCTCTAAAGATCGATGAGAATGTTCAAATTATGTGAATATAGTACAGTAACCCGATTCGAAAAGAAGTTGAGAGATGTTTGCTTAAACTTTTAGGTTCAGTGGAACTTTACTAAATGATTTCAACGATGTAAAATACCGAAACAAAGACTTGGTCTCAGGTTCGGTATTGATCTCGGACTTCCACCAAACAAATCTCGGCAATACTGCAACTTCGACTGCTTGAAATAGCCTTAGATCGTTAAAGTAATCCTTACTCCTTTCTTTGAATGGTCTCTTTGAAACAATACTCAATTGTATTCATCAATGTTTTGTCCAATCCTTCCCAACTTGGACAACTAGTTGTAGATGTTCGGGTGCCTTTCCAGCTTGGTTCGAGAGAGGCGAAATGCCGATGGATCTTCGGGAAGACTTGTGTTACGACAGCTTACCGATTCCATTGGGGAATTTGTTCTACAACTATGTCTCACTATGTGGCTAGACTGTACTCGGAGCTGTATAAAAAAAATCATTGAAACAAACTGTGAATCGAAGATCATAACAAATGGTTGAAGTACATGTACAATAACAGTTTGATTGGTATCAATTTATTATGTACTTATAAATTCCAATTCAATGAAGTAATTAATTTCCATTTTTACTAAATTATGAACTTAAAATTACCAAATTTTTTTATAAGGATGGTTGAGAATACTTTATTTTGTACCGACATAATATTTTAAAATGACCTATTTGAATTTTTATAAGGTTATTTTATAAAATGAGTTTGATATTATTTTTCATTTTAATTTGAAATACTTGGGTTAATAATTAAATTATTCCTAAAATAAATTTTATAATTAATAGCGTCATTTTGGTGAATTATATATACATTATCAAAATAGAGAAAATATTAATTTATAAAAAATATATAAATTGGAGGATCATCGTTAGAAAAATAAACATTTTGTAGGAATTCTAAAAATAATAAAAACTGTTAAAAAATTGAATTTAATAGACCAAATTGATAAATACCATTTTCGAATTTTAAAATTGAATTAAATATAAAAATAAAAGATTTGTTCTTATTTTCCACAAAATTCTTTGTTTTTAAAAACAAAATTTTGAAACATTAATTGGAGTATTTGGTGTAATTTGTTAATTTTTTTTAAAATATATTAAAAATATTATAATATATATTTTATTCACAGTTTAAACCCTAGCCAATTCCACTTCAGATACCTCGTGCCGCTTAAACCTTCCCTCTCCCGCCTAAACCCTCCTCAGCCGTGCCGTTCAGTGCCGCCGCCGCCGTCGTCATTCTCGAATTTGCTTCTCCTCCGTGCTGCGTCAGTCTTCGTCGAAGGTTTATAATGTCCGGTGAAGATAAGAACTTGCATAGTATGTCGGAGTCGGATTCCGAACAAGAAGATGTTGGCAAAGAAGGCATTGAATGGATAATGAACCTTCCAGACGTGCCGATGAAGCTCCCACCACATGTAGAATTGCAGAGGACTCGCGTCGAATGCAAAGCCGATGCTCCCATTCATGTACCCTTCTCTTCCCTCTCCCATGTTTTGTTTGTTTTGTCATCTTACTCTTTTTCATTCGAATTCTAAGAATGATGTTCAATTCAATGAAGTAAATGTTTTGTTTTTGTTTGTCTTTTTTTTTCTTTTAGATGCGGAAGCTAAGTAGAATCTTGTTCAAGTCTTTGCTCCTAAGCTTGAGGAACTATTCTTTTTAAGACGTTTAATTTAGTTATGTAGTAGGTTGAAATGCATGAATAAATATCAACCTATTAAATTAAGTTTCATGTTTTTGGAGAGAAGCGAATTTAATGGTTATGACTTTGTAGGTCTATATTGTTTTTCCATCTCTGTGCTTGATTTTTATTCATAGAATGTGTCTGCCTATGCTTGATACTGTAATAGGGTTGTTTAAATTTTCTTCTCATGGTCCTTGTGGAAAATGTTGTCTTTTGTAGACGGATACGATACAGTATTCTGGAGCATATGCTTCGTTGGGTATTGATAACAGCTTACGACTGGATTCTTTTCGCAAGAACTTCAAAATTGAAGTGATTGATCTCAAAGAGGATGACATGGAATTCGACATGATTGGCATTGACCCATCCCTCGCTAATGCATTTAGGAGAATCCTGATAGCTGAGGTAGGTAATCAAGCACATTGAATTAAAATTAAATTACTTGTTCTTTTTAGATAGATTTTTTATGGACTTTTGGTATATGCCTCCTTGTCACCAATTCTGGTGTGCTACTGTGATTAATATATCAAAAAGCTCTTGAGATTTAGCTTGAAGGCCAGATGTAAATTTGTAGTCCCATGATTGCCCATTTGCTTCATCTGAAGCCTGTGTTTTGTATGGAAGAGACATGCTCACATGATAATGTATGGAAGTTTGGAGTCTCCGTGCCTTATGTAATGGTTAGAAGAATAACTTTGGAATATCGTCTATTCTTCAAAATATGGAAGTTTGTTCATGTTATCGAATCTCATGAATTAGTGATTTTGGTGATAATGGCTTGAGCTACTGGAGTTGTCTTGTTAGACATGACATGGTCCTCGGTGTACATATTATTTCCTTTTCCATTGTAACTTAAAGAAACACCCAGACGAAAGTTAGGAATGGGGCAATCCCATTAACTTCAATGATGATGCTATTGAAATTGAACTTCAGGATTTTCGTTTAAAGAAGTGAAAAATTGATAGAAGTGAGACTTTTTGTTTTATAATAAAATAATAACTATCATGACACAGTTTTGCCTTTTTTCTTCCCTCAATATTTTTTGATTAAATTAAGGCTTATGCCTTGTCTCTCCTGTTGAAAAGCCTTTGGGAATGCTTTTAGACCCTGTTTGGGATTAATTTTACAGGCATTAAAAGTGACTATGGTGAAATTTTAACCCTTTTATTCTCGGGTAAATCTGCTTATTAAATAACCTTAAGAAAACCACTTTTAAAATTACTTCGATCTGTGAAGATCTGTTTTCTGTAGCTTTTAGGATTGACTTCCCAAAAAATATGATAGCTCTTCTTACTAACTTTCCATAATTTCCAGTTTATCCCATATTATTCTTGTATTTCACATTTAAGTTTGAAATTTATACAACGCTTATTTACTAAATATTACAACTAATATTTCTGAAAGCACAGTTGACAATTATTTTAAAAGTTGTAGCTATGCCAAACTAGCCTTAGTCTGTTAGAGCGTTCCATGTGATTAGGGATGTTTATTAATGAATGGATTGTATGTATTTTTTCTGTTGGGATTTTTCATATGAAATTTCCTTCTATGTTAACAATTACAATATTTACATTCTTGCTATGCTGATATGGGTTTGATCTACCTTTTTATGCAGGTTCCCACTATGGCTATTGAAAAAGTATTGGTTGCTAACAATACATCAATAGTCCAAGATGAAGTGCTTGCCCATAGGTTAGGTCTCATCCCGATTCGTGTTGATCCAAGGCTTTTTGAGTACTCAGGTATTTGTGTGTATGTATCTGTACATCTAATGTGCTTATTTCTGCTGATACTGGAGACTTTTATATGCATGTTAAGAAATAATTTCTATTTGGCTGACCCTAATACATTCTGAATACGCTTAACTAATAACTTCTGTTCAAAATTAGATAAAGACACGCCAAATGAGAAAAATACAATTGTTTTTAGACTCCATGTTCGCTGTGAACGTGGAAAACCTCGTCTTACCGGTATTTTTTCTGTTTCCTTTATAATATATGCTAAAATTTCATAATTTTAAACTTTTTTCAATATTTTCTTGTTTCACTACTAATGCTGAATGTATAATGGGTGATTCAGCGACTTCAGAAGCATTGACATGGCTACCAAATGGTAGTGAATTTCCTTTGGTATCTGATAAATCAGTTTCAAACTCAAAGCCCAAAACATATACTTCTTTTAGTTGCAGCCAAGACACGCTGCCAGAATTTGCCAACAATCCAATTGGTCCAAAGGACGGTGATATTATACTTGCTAGACTCAGCTCGGGTCAGGTAACTGACCCGAAAACTTTATCTATTTTCTGTTGAAATATTGGGAAGAAGTGGTGTGCATGGGTAGATGATCAAAGCTGATGAGTTATGCTATAATGTAACATGTCTTAAATTTAAATTGTGTTTTGTACTTGTAATTTTGTTTGCAAATAATCGTGGAGCTCTGTAGGTATTTTAGGTTAATTGAAGAAGCAAATTTGGTATAATCATTACATATGAATATGAAATTGGCATATATAATTTATAACTGGAGTTGATATCACTTCGTGTATGTGGTGCTTGTGCTACCAGACTAATTATTTATACTGCAAGTACCTTCACTTCCAATTGAAATCCATTTTGGCAGTTCCAGTTCCAGTATTATAAATTTCTTTGTACCTTAATATATTGTAATTTTCATATTAGCAAGAAAATAATATTTATAATGGAATTACTCCCGAAGCAATGGGATGTTTGCTATGCTATGATTTTGGGTATATTTCAGTGCTTCATGTGCTATTTTTTCTGAGTAGTTAGCAGGTGTAAGTTTCTTAATTTTTGTTTCAAATATTTATAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACATGCTAAGTGGTCTCCAGTGGCCACTGCTTGGTACAGAATGCTTCCTGAGGTAAGAAAATATGTTAATTTGTTACTCAAAGATACATAGATGTTTTGAAGCCCTAACGAAAGTTGTGATATTAGGTTGTACTTCTGGAAGAGATAGAGGATGAGTTGGCAGAAGAACTCAAAAACAAATGTCCTGTTAATGTCTTCGACATTGAAGATATAGCTAATGGTTAGTTTGCTTCATACATAGGCTATTAATTTATGTTTGTACTTGGAACATTACGGTGGTAATGTTTCGGTGATGGGAAGGATTCTTTAAGATTGAAGTTCTTGTTATGTATGGGCCTCTTTGATGATGTTCCCATTGCTTGTTTCCTGTTCACATTTCTCATATTTTAAAAAACAAGTTTGTTTTTGATAATCATTCTCATTTCTTGTTTCTAAAATTAAAAAAATGTATCTAAAGTTGGGGCCAAATTTCAGAAGCTACAAGAAGTAGTTTCAATGTGTTCCATTTCTTTCCTCCCGTCTTCCATTCCTTTTCCACAATTTTCTAGGGCTCTTTCTTCAAGCTTTCTCCTCTCTCAAGCATAGGCACATACACCTGAGGGGTAAAATTTCTGCTCGATATCTATTCGATTTCTCGTCTTCTGTTTCCTCTTTGATTTCTGCTCTGTTTTCCGCCTTCTTTTTGTTCATTTAATTCTTTGAAAGAGTATTTTGAAATTTCCTCGAGTGTTTGATTCTCCAGCATTCTCTTCAAATTTGTGCTCATAAATTAAATTTCTGCTGATGTTGTGCTGGGTTTTAGTATGCGTTTTGTGAGTTTGATGTGTTTTGTTTATTTTATGGTATTCTGTGGCCGACTATGGAAAAATATGTTTTTTTGTGTATATTTTGTTCTGGTGTATGCCTTTCTTTTATTTTTCCTTGATTTTTCATGCTTCTATACTGTCTTGGAACAAATCACTAGTGGAGCTTCTTTTTCTTCATTTGGTTGGTTCCAATCATTCTTGTCACTTGGATCCCCATTGTTGTGCTGGTTTACTTCCTTGGGAAGTCTAACAGGGAGGGGAGGAAGATTAATGAAGACTTTTGGAGTTGTGGCTAAGATTTGTTCAAGGAAGTGAATTTGGTGGCTGTTGCTTGTGCTGTTTTGGGATGCTTCGCTTTGTGTAGGAAGACTAAGGAGAGTTAGAGTTGCTTAATCCAGGCTGACTTTTGGATTCTGATGGCTAATTTGGGTGGGGTAGAGGAAGGATTTGAGGTTTTGGATCAAAAGGATATTTGGGATTTCTGATGAGGGTTAGATTTGGTAATTGTTTTTGTTCCTCTATGTTGGTTTTCTGACATTCTGTGGCGGCGATGGTTCCTGATTTGAGGTATTAATGGGTTATTTAAGCTTTATTGAAAAGAAGAAACAAGAAAAAGTTACCCAAGCTTTTGTTTCTTGGTTTTTCTTTTTCAAGAAAGAAGAAACATAAATAGTTATGAAACATATTCGCGTTTCTAGTTCTAAAAAAAACAGGAAACAAGAAACAATAATGTTATCAACTGGGGCTTATATAACTAATTTCCCTACTTTTTGGGAGTCTTATTTATATCCTAATGGAGTTTTAGCCTTGAAACTTTTCAAATACTGACAGAAAGTTGTCTTTCAATGAAAAACCAAAAGAGAGTCAAGTTTTTATCCTCTCCCTCGGTATGCTATATCTCCTGCATCCCTTTCATTTCTGATGAATAGATGATGAGTTATTTGGTTCTTTCTTATATTGCAAAGATGGATTTCAAATGGTCGCATGTTGTTGGTCTATTTTTTCCTAATTCAAATTGATTCCTTTTTCTCCCACACTTAATTATTGTAAAATTTTGATTTGTAGGTAAGAAAAGGGCAACTGTTGCACGTCCACGAGCTTGCACATTGTGCAGAGAATGCATAAGAGGAGAAGCATGGGAGAAACGTGTCTCATTGCGTCGGGTGAAGGATCATTTCATTTGTAAGTTATGGATTTATATGCACAACTTAGATGGTAGAACTAGACAGGATAAATAATGGTGCTGATGGTCGACACATCTTTTTTTTGTTGAAGTGACGTTTTTCAAAATCACTTTTAAACATTATAAGTCCAAGTAGAAAATGTATTTTTGTCACAGAAAAAGATTCTTTTAACTGGGTCAAACATACTCCCAAATAAACACCCTTAGTTATCTTTGTTAATGGTTTCAAGAAACTCATTCCTCATTGATTATGTTCATTTTCGTCTTTCCTTTCTTCTGCAGTTAAGATTGAATCAACAGGAGCTTTACCTCCAGAGGTGCTGTTCACTGAAGCTGTAAAGATTTTGGAAGATAAGTGTGAACGTTTAATTGCTGAGCTCTCTTGATAATTCCTGTCCAAAAGAGATGAACGTGTACATTATTTCATCTTATTCAGCAGTCATCAATTTTTGTAATATAGGAGGTTTCATATTCTATTTTTCTTTTTAATTGACAGTAGAATAGTAAGTTTTGCTGATCTCTCTTGATTCCTCCTAGATTTTATGAATGCCAACTTGGAGGTGATCGAATAAGAGAATGGACAAAGATAATGTTATTTCTTCAATGGAAGTTTTAATTATCATCAATTAGTCCTTGGATGTGGAAGGAAAATACCTCAAATTTTCATTCTGGAAAAAAAGGTTTTGGATATTCTATCAGATCCATTTGCGAATGGTTTATATCTAAGTCTGTTTACTTCTAAGGAGCTC

mRNA sequence

ATGGCAGCCGTCGCCTCGTCTTCCGCTGTTTTTGCCGCCTCGTCCTTCTCCGCCGCCGTCAGGAGGCAGCAGCCGAACCCCTCCACCATATCATACCAAGGCCTCCGCCCACTCCCGGGGATCAAATCCAGCCGCAGCCTTGCAGCCGTGAAGAGCCCAAGATCCTTGGTGGTGAAGGCAGAGCTGAACCCATCAGTGGTGATAAGCCTGAGCACAGGGCTGTCCCTGTTCCTGGGGAGGTTCGTGTTCTTCAACTTCCAAAGGGAGAATGTGAGCAAGCAAGTGCCGGAGCAAAATGGGGTGACCCATTTCGAGGCAGGCGATGTGAGGGCGAAGGAGTATGTTAGCTTGTTGAAATCTAACGATCCTGTTGGGTTTAATATTGTTGATGTTCTTGCTTGGGGCTCTATTGGCCATATCGTTGCTTATTATATCTTGGCCACTTCTAGCAATGGCTATGATCCCAAGTTTATCGAGCTAGGGGTTTCTCTGGTTTGTGCGACTGCTTTTTCGTTCTTGTTTTACGAATCTAAAGAACTGTTTTCCATTTTCTTTGCGTTTGAAGGGCCGAGGAGACGAGGGAAAAGTCTAGAGATGACTACTGCAGCTCGACCCACGTGGGCACCGGCTAAAGGTGGAAATGAACAAGGTGGCACTCGAATTTTTGGCCCATCACAGAAATATTCCTCCAGAGACATCGCTTCTCATACGACCTTGAAACCCAGTTTTGCAAAGACAGCTGGAGCTGGAGCTGCTGAAATTGAAGTTGGTAGAGTCATTGGAGTGTCTTTTGGGATCTTGTTATTTTGGCTTAAACCTCCAAGCCGAAGGAAGGAAGGACAAGATACCCATGATGAATTGCAAAGGAGGAATCTCAGGGACGAGTTAGAAGATCGTGAAAGGAGGCATTTTTCATCAAAGAATAAATCATATGATGATAGAGATCATAGAAAAGGAAGCCAACTTCTGTTAGAAGGCGGAAAGAGAGATATTGAAGATCGTATTATTCCACGAAGTTTAGATGCTGACGATTCTGATGTGGACGTGAAAAGTGACAACGAGAGTGACGATGATGAGGATGACGATGATGAGGATGATACTGAAGCTCTTTTGGCAGAGCTGGAACAAATAAAGAAGGAAAGAGCGGAGGAGAAGCTTCGAAAGGAAAGACAAGAGCGAGAGGAAGAGCTTAAAGTCAAGGAAGCGGAGTTACTCCGAGGAAATCCACTGCTTAACGAGCAACCCGCCTCTTTTAGTGTCAAAAGAAGATGGGACGATGATGTTGTGTTCAAGAATCAGGCCCGTGGCGAAACAAAGACTCCTAAGCGCTTTATAAACGATACCATCAGGAACGACTTCCACCGAAAATTCTTGCACAAGTTCAGTGGAACTTTACTAAATGATTTCAACGATGTAAAATACCGAAACAAAGACTTGGTCTCAGCCGTGCCGTTCAGTGCCGCCGCCGCCGTCGTCATTCTCGAATTTGCTTCTCCTCCGTGCTGCGTCAGTCTTCGTCGAAGGTTTATAATGTCCGGTGAAGATAAGAACTTGCATAGTATGTCGGAGTCGGATTCCGAACAAGAAGATGTTGGCAAAGAAGGCATTGAATGGATAATGAACCTTCCAGACGTGCCGATGAAGCTCCCACCACATGTAGAATTGCAGAGGACTCGCGTCGAATGCAAAGCCGATGCTCCCATTCATACGGATACGATACAGTATTCTGGAGCATATGCTTCGTTGGGTATTGATAACAGCTTACGACTGGATTCTTTTCGCAAGAACTTCAAAATTGAAGTGATTGATCTCAAAGAGGATGACATGGAATTCGACATGATTGGCATTGACCCATCCCTCGCTAATGCATTTAGGAGAATCCTGATAGCTGAGGTTCCCACTATGGCTATTGAAAAAGTATTGGTTGCTAACAATACATCAATAGTCCAAGATGAAGTGCTTGCCCATAGGTTAGGTCTCATCCCGATTCGTGTTGATCCAAGGCTTTTTGAGTACTCAGATAAAGACACGCCAAATGAGAAAAATACAATTGTTTTTAGACTCCATGTTCGCTGTGAACGTGGAAAACCTCGTCTTACCGCGACTTCAGAAGCATTGACATGGCTACCAAATGGTAGTGAATTTCCTTTGGTATCTGATAAATCAGTTTCAAACTCAAAGCCCAAAACATATACTTCTTTTAGTTGCAGCCAAGACACGCTGCCAGAATTTGCCAACAATCCAATTGGTCCAAAGGACGGTGATATTATACTTGCTAGACTCAGCTCGGGTCAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACATGCTAAGTGGTCTCCAGTGGCCACTGCTTGGTACAGAATGCTTCCTGAGGTTGTACTTCTGGAAGAGATAGAGGATGAGTTGGCAGAAGAACTCAAAAACAAATGTCCTGTTAATGTCTTCGACATTGAAGATATAGCTAATGGTAAGAAAAGGGCAACTGTTGCACGTCCACGAGCTTGCACATTGTGCAGAGAATGCATAAGAGGAGAAGCATGGGAGAAACGTGTCTCATTGCGTCGGGTGAAGGATCATTTCATTTTTAAGATTGAATCAACAGGAGCTTTACCTCCAGAGGTGCTGTTCACTGAAGCTGTAAAGATTTTGGAAGATAAGTGTGAACGTTTAATTGCTGAGCTCTCTTGATAATTCCTGTCCAAAAGAGATGAACGTGTACATTATTTCATCTTATTCAGCAGTCATCAATTTTTGTAATATAGGAGGTTTCATATTCTATTTTTCTTTTTAATTGACAGTAGAATAGTAAGTTTTGCTGATCTCTCTTGATTCCTCCTAGATTTTATGAATGCCAACTTGGAGGTGATCGAATAAGAGAATGGACAAAGATAATGTTATTTCTTCAATGGAAGTTTTAATTATCATCAATTAGTCCTTGGATGTGGAAGGAAAATACCTCAAATTTTCATTCTGGAAAAAAAGGTTTTGGATATTCTATCAGATCCATTTGCGAATGGTTTATATCTAAGTCTGTTTACTTCTAAGGAGCTC

Coding sequence (CDS)

ATGGCAGCCGTCGCCTCGTCTTCCGCTGTTTTTGCCGCCTCGTCCTTCTCCGCCGCCGTCAGGAGGCAGCAGCCGAACCCCTCCACCATATCATACCAAGGCCTCCGCCCACTCCCGGGGATCAAATCCAGCCGCAGCCTTGCAGCCGTGAAGAGCCCAAGATCCTTGGTGGTGAAGGCAGAGCTGAACCCATCAGTGGTGATAAGCCTGAGCACAGGGCTGTCCCTGTTCCTGGGGAGGTTCGTGTTCTTCAACTTCCAAAGGGAGAATGTGAGCAAGCAAGTGCCGGAGCAAAATGGGGTGACCCATTTCGAGGCAGGCGATGTGAGGGCGAAGGAGTATGTTAGCTTGTTGAAATCTAACGATCCTGTTGGGTTTAATATTGTTGATGTTCTTGCTTGGGGCTCTATTGGCCATATCGTTGCTTATTATATCTTGGCCACTTCTAGCAATGGCTATGATCCCAAGTTTATCGAGCTAGGGGTTTCTCTGGTTTGTGCGACTGCTTTTTCGTTCTTGTTTTACGAATCTAAAGAACTGTTTTCCATTTTCTTTGCGTTTGAAGGGCCGAGGAGACGAGGGAAAAGTCTAGAGATGACTACTGCAGCTCGACCCACGTGGGCACCGGCTAAAGGTGGAAATGAACAAGGTGGCACTCGAATTTTTGGCCCATCACAGAAATATTCCTCCAGAGACATCGCTTCTCATACGACCTTGAAACCCAGTTTTGCAAAGACAGCTGGAGCTGGAGCTGCTGAAATTGAAGTTGGTAGAGTCATTGGAGTGTCTTTTGGGATCTTGTTATTTTGGCTTAAACCTCCAAGCCGAAGGAAGGAAGGACAAGATACCCATGATGAATTGCAAAGGAGGAATCTCAGGGACGAGTTAGAAGATCGTGAAAGGAGGCATTTTTCATCAAAGAATAAATCATATGATGATAGAGATCATAGAAAAGGAAGCCAACTTCTGTTAGAAGGCGGAAAGAGAGATATTGAAGATCGTATTATTCCACGAAGTTTAGATGCTGACGATTCTGATGTGGACGTGAAAAGTGACAACGAGAGTGACGATGATGAGGATGACGATGATGAGGATGATACTGAAGCTCTTTTGGCAGAGCTGGAACAAATAAAGAAGGAAAGAGCGGAGGAGAAGCTTCGAAAGGAAAGACAAGAGCGAGAGGAAGAGCTTAAAGTCAAGGAAGCGGAGTTACTCCGAGGAAATCCACTGCTTAACGAGCAACCCGCCTCTTTTAGTGTCAAAAGAAGATGGGACGATGATGTTGTGTTCAAGAATCAGGCCCGTGGCGAAACAAAGACTCCTAAGCGCTTTATAAACGATACCATCAGGAACGACTTCCACCGAAAATTCTTGCACAAGTTCAGTGGAACTTTACTAAATGATTTCAACGATGTAAAATACCGAAACAAAGACTTGGTCTCAGCCGTGCCGTTCAGTGCCGCCGCCGCCGTCGTCATTCTCGAATTTGCTTCTCCTCCGTGCTGCGTCAGTCTTCGTCGAAGGTTTATAATGTCCGGTGAAGATAAGAACTTGCATAGTATGTCGGAGTCGGATTCCGAACAAGAAGATGTTGGCAAAGAAGGCATTGAATGGATAATGAACCTTCCAGACGTGCCGATGAAGCTCCCACCACATGTAGAATTGCAGAGGACTCGCGTCGAATGCAAAGCCGATGCTCCCATTCATACGGATACGATACAGTATTCTGGAGCATATGCTTCGTTGGGTATTGATAACAGCTTACGACTGGATTCTTTTCGCAAGAACTTCAAAATTGAAGTGATTGATCTCAAAGAGGATGACATGGAATTCGACATGATTGGCATTGACCCATCCCTCGCTAATGCATTTAGGAGAATCCTGATAGCTGAGGTTCCCACTATGGCTATTGAAAAAGTATTGGTTGCTAACAATACATCAATAGTCCAAGATGAAGTGCTTGCCCATAGGTTAGGTCTCATCCCGATTCGTGTTGATCCAAGGCTTTTTGAGTACTCAGATAAAGACACGCCAAATGAGAAAAATACAATTGTTTTTAGACTCCATGTTCGCTGTGAACGTGGAAAACCTCGTCTTACCGCGACTTCAGAAGCATTGACATGGCTACCAAATGGTAGTGAATTTCCTTTGGTATCTGATAAATCAGTTTCAAACTCAAAGCCCAAAACATATACTTCTTTTAGTTGCAGCCAAGACACGCTGCCAGAATTTGCCAACAATCCAATTGGTCCAAAGGACGGTGATATTATACTTGCTAGACTCAGCTCGGGTCAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACATGCTAAGTGGTCTCCAGTGGCCACTGCTTGGTACAGAATGCTTCCTGAGGTTGTACTTCTGGAAGAGATAGAGGATGAGTTGGCAGAAGAACTCAAAAACAAATGTCCTGTTAATGTCTTCGACATTGAAGATATAGCTAATGGTAAGAAAAGGGCAACTGTTGCACGTCCACGAGCTTGCACATTGTGCAGAGAATGCATAAGAGGAGAAGCATGGGAGAAACGTGTCTCATTGCGTCGGGTGAAGGATCATTTCATTTTTAAGATTGAATCAACAGGAGCTTTACCTCCAGAGGTGCTGTTCACTGAAGCTGTAAAGATTTTGGAAGATAAGTGTGAACGTTTAATTGCTGAGCTCTCTTGA

Protein sequence

MAAVASSSAVFAASSFSAAVRRQQPNPSTISYQGLRPLPGIKSSRSLAAVKSPRSLVVKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVSKQVPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFIELGVSLVCATAFSFLFYESKELFSIFFAFEGPRRRGKSLEMTTAARPTWAPAKGGNEQGGTRIFGPSQKYSSRDIASHTTLKPSFAKTAGAGAAEIEVGRVIGVSFGILLFWLKPPSRRKEGQDTHDELQRRNLRDELEDRERRHFSSKNKSYDDRDHRKGSQLLLEGGKRDIEDRIIPRSLDADDSDVDVKSDNESDDDEDDDDEDDTEALLAELEQIKKERAEEKLRKERQEREEELKVKEAELLRGNPLLNEQPASFSVKRRWDDDVVFKNQARGETKTPKRFINDTIRNDFHRKFLHKFSGTLLNDFNDVKYRNKDLVSAVPFSAAAAVVILEFASPPCCVSLRRRFIMSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHVRCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIGPKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLIAELS

Homology

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BLAST of CmaCh06G006670 vs. ExPASy Swiss-Prot
Match: Q32L22 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=POLR1C PE=2 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 4.3e-79
Identity = 169/350 (48.29%), Postives = 221/350 (63.14%), Query Frame = 0


Query: 553 VELQRTRVECKADAPIHTDTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFD 612
           VE  RTRV        +  T  + G Y+  G D++   D F KNF+++V+ + E+ +EFD
Sbjct: 7   VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 66

Query: 613 MIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEY 672
           M+GID ++ANAFRRIL+AEVPTMA+EKVLV NNTSIVQDE+LAHRLGLIPI  DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 126

Query: 673 SDK--DTPNEKNTIVFRLHVRCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKT 732
            ++  +   E +T+ FRL VRC R       +S+      N   +          ++  T
Sbjct: 127 RNQGDEGGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVY----------TRHMT 186

Query: 733 YTSFSCSQDTLPEFANNPIGPKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATA 792
           +       D  PE A   I P   DI++A+L  GQEI+L  H VKG+GK HAK+SPVATA
Sbjct: 187 WVPLGNQADLFPEGA---IRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATA 246

Query: 793 WYRMLPEVVLLEEIEDELAEELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRG 852
            YR+LP++ LLE +E E AEEL       V ++++I  GKK A VA PR  T  RE  R 
Sbjct: 247 SYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVANPRLDTFSREVFRN 306

Query: 853 EAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLIAEL 901
           E  +K V L RV+DHFIF +ESTG LPP+VL +EA+K+L  KC+R + EL
Sbjct: 307 EKLKKVVRLARVRDHFIFSVESTGVLPPDVLVSEAIKVLMGKCQRFLDEL 340

[Close]

BLAST of CmaCh06G006670 vs. ExPASy Swiss-Prot
Match: P52432 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN=Polr1c PE=1 SV=3)

HSP 1 Score: 293.5 bits (750), Expect = 8.1e-78
Identity = 168/350 (48.00%), Postives = 217/350 (62.00%), Query Frame = 0


Query: 553 VELQRTRVECKADAPIHTDTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFD 612
           VE  RTRV        +  T  + G YA  G D++   + F KNF+++V+ + ED +EFD
Sbjct: 7   VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVDVVQMDEDTLEFD 66

Query: 613 MIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEY 672
           M+GID ++ANAFRRIL+AEVPTMA+EKVLV NNTSIVQDE+LAHRLGLIPI  DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 126

Query: 673 SD--KDTPNEKNTIVFRLHVRCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKT 732
            +  ++   E +T+ FRL VRC R       +S+      N   +          ++  T
Sbjct: 127 RNQGEEEGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELYVNHKVY----------TRHMT 186

Query: 733 YTSFSCSQDTLPEFANNPIGPKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATA 792
           +       D  PE     I P   DI++A+L  GQEI+L  H VKG+GK HAK+SPVATA
Sbjct: 187 WVPLGNQADVFPE---GTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATA 246

Query: 793 WYRMLPEVVLLEEIEDELAEELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRG 852
            YR+LP + LLE +E E AEEL       V ++E++  GKK A VA  R  T  RE  R 
Sbjct: 247 SYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLDTFSREIFRH 306

Query: 853 EAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLIAEL 901
           E  +K V L RV+DH+IF +ESTG LPP+VL +EA+KIL  KC R + EL
Sbjct: 307 EKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340

[Close]

BLAST of CmaCh06G006670 vs. ExPASy Swiss-Prot
Match: O15160 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=POLR1C PE=1 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.1e-77
Identity = 165/350 (47.14%), Postives = 219/350 (62.57%), Query Frame = 0


Query: 553 VELQRTRVECKADAPIHTDTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFD 612
           VE  R+RV        +  T  + G Y+  G D++   D F KNF+++V+ + E+ +EFD
Sbjct: 7   VEEMRSRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 66

Query: 613 MIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEY 672
           M+GID ++ANAFRRIL+AEVPTMA+EKVLV NNTSIVQDE+LAHRLGLIPI  DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 126

Query: 673 SDK--DTPNEKNTIVFRLHVRCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKT 732
            ++  +   E +T+ FRL VRC R       +S+      N   +          ++  T
Sbjct: 127 RNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVY----------TRHMT 186

Query: 733 YTSFSCSQDTLPEFANNPIGPKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATA 792
           +       D  PE     I P   DI++A+L  GQEI+L  H VKG+GK HAK+SPVATA
Sbjct: 187 WIPLGNQADLFPE---GTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATA 246

Query: 793 WYRMLPEVVLLEEIEDELAEELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRG 852
            YR+LP++ LLE +E E AEEL       V +++++  GKK A VA PR  T  RE  R 
Sbjct: 247 SYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFRN 306

Query: 853 EAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLIAEL 901
           E  +K V L RV+DH+IF +ESTG LPP+VL +EA+K+L  KC R + EL
Sbjct: 307 EKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340

[Close]

BLAST of CmaCh06G006670 vs. ExPASy Swiss-Prot
Match: Q54SN4 (DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum OX=44689 GN=polr1c PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 1.1e-71
Identity = 150/352 (42.61%), Postives = 213/352 (60.51%), Query Frame = 0


Query: 551 PHVELQRTRVECKADAPIHTDTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDME 610
           P++E +RT+V        +     YSGAY S+G DNS  L+ F++NFKI ++    +++ 
Sbjct: 13  PNLENKRTKVTLTNSGVENARGTYYSGAYTSVGYDNSFNLNRFKENFKINILSESANELV 72

Query: 611 FDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLF 670
           F+MIGID  +ANA RRI+I+E+PTMAIEKV + NNTSI+QDEVLAHRLG+IPI+VDPR F
Sbjct: 73  FEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRLGMIPIKVDPRKF 132

Query: 671 EYSDKDTPNE----KNTIVFRLHVRCER----GK-PRLTATSEALTWLPNGSEFPLVSDK 730
            +     PN+    ++T++F+L V+CE+    GK    TA S+ L W+P   +       
Sbjct: 133 NFK---LPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETALSKHLIWVPTQDQ------- 192

Query: 731 SVSNSKPKTYTSFSCSQDTLPEFANNPIGPKDGDIILARLSSGQEIELEAHAVKGMGKTH 790
                           ++  P   + P  P + DI + +L  GQ I+++ +  K +G+ H
Sbjct: 193 ----------------EEMFPNEEDRP-RPMEDDIPIMKLRPGQVIDIQCYCEKNIGREH 252

Query: 791 AKWSPVATAWYRMLPEVVLLEEIEDELAEELKNKCPVNVFDIEDIANGKKRATVARPRAC 850
            KWSPV TA YR+ P + + + I+ + A +L  KCP  VFDIED      +   ARP  C
Sbjct: 253 IKWSPVCTASYRLQPVISVDKSIKGDKANQLLEKCPKKVFDIED----SGQVVAARPLDC 312

Query: 851 TLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKC 894
           T+CRECIR   +E+ V + RV+DHFIF IESTGAL    +F EA+KI  +KC
Sbjct: 313 TMCRECIRDPEFEQNVKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKC 333

[Close]

BLAST of CmaCh06G006670 vs. ExPASy Swiss-Prot
Match: O94616 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc40 PE=1 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 1.4e-66
Identity = 143/360 (39.72%), Postives = 209/360 (58.06%), Query Frame = 0


Query: 553 VELQRTRVECKADAPIHTDTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFD 612
           V+  RT +   +D      ++ + G Y     DN   LD F+KN K+ +  L ++ M F+
Sbjct: 4   VDRSRTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFE 63

Query: 613 MIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEY 672
           + GID S+ANAFRRILIAE+PT+A E V + NNTSI+QDEVL+HR+GL+PI  DP +F++
Sbjct: 64  ISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKW 123

Query: 673 SDKDTPNEK------NTIVFRLHVRCERGK---------PRLTATSEA----LTWLPNGS 732
                P ++      +T+VF L+ +CE  K          RL   SE     L W P G 
Sbjct: 124 FQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGR 183

Query: 733 EFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIGPKDGDIILARLSSGQEIELEAHA 792
           +                             FA+NPI   + DI++A+L  GQEI+LEAHA
Sbjct: 184 Q--------------------------EERFADNPIRVVNPDIVVAKLRPGQEIDLEAHA 243

Query: 793 VKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKNKCPVNVFDIEDIANGKKRA 852
           + G+G+ HAK+SPVATA YR+LP + +L  IE E A + +   P  V ++E+  +GKK+A
Sbjct: 244 ILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQA 303

Query: 853 TVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKC 894
            VA  R  T+ REC+R   +  +V L RV+DH++F +ESTG + P+VLF +++ +L+ KC
Sbjct: 304 RVADVRKDTVSRECLRHPEFADKVQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKSKC 335

[Close]

BLAST of CmaCh06G006670 vs. ExPASy TrEMBL
Match: A0A6J1L269 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661 GN=LOC111498423 PE=3 SV=1)

HSP 1 Score: 784.3 bits (2024), Expect = 5.6e-223
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0


Query: 511 MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 570
           MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT
Sbjct: 1   MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 571 DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 630
           DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 631 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 690
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 691 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 750
           RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG
Sbjct: 181 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 751 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 810
           PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 811 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 870
           ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 871 ESTGALPPEVLFTEAVKILEDKCERLIAELS 902
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of CmaCh06G006670 vs. ExPASy TrEMBL
Match: A0A6J1FDA3 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=3662 GN=LOC111443051 PE=3 SV=1)

HSP 1 Score: 777.7 bits (2007), Expect = 5.2e-221
Identity = 386/391 (98.72%), Postives = 391/391 (100.00%), Query Frame = 0


Query: 511 MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 570
           MSG+DKNLH+MSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 571 DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 630
           DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 631 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 690
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 691 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 750
           RCERGKPRLTATS+ALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQDTLPEFANNPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 751 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 810
           PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 300

Query: 811 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 870
           ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 871 ESTGALPPEVLFTEAVKILEDKCERLIAELS 902
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of CmaCh06G006670 vs. ExPASy TrEMBL
Match: A0A0A0L637 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis sativus OX=3659 GN=Csa_3G047880 PE=3 SV=1)

HSP 1 Score: 715.7 bits (1846), Expect = 2.4e-202
Identity = 356/392 (90.82%), Postives = 374/392 (95.41%), Query Frame = 0


Query: 511 MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 570
           MSG+DKNLH+MSES+SEQE V KEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 571 DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 630
           DTIQYSGA+AS+G DNSLRLD+FR NFKIEVIDLKEDD+EFDMIGIDP+LANAFRRILI+
Sbjct: 61  DTIQYSGAFASMGFDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIS 120

Query: 631 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 690
           EVPTMAIEKVL ANNTSIVQDEVLAHRLGL+PIRVDPRLF+YSDKD PNE NTIVFRLH 
Sbjct: 121 EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA 180

Query: 691 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTL-PEFANNPI 750
            CERGKPRLT TS+ALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQ+TL  EF+NNPI
Sbjct: 181 CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI 240

Query: 751 GPKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELA 810
           GPKD DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVL+EEIEDELA
Sbjct: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLMEEIEDELA 300

Query: 811 EELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFK 870
           EEL+ KCPVNVFDIEDIA GKKRATVARPR CTLCRECIRG+AWEKRV+LRRVKDHFIFK
Sbjct: 301 EELEKKCPVNVFDIEDIA-GKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFK 360

Query: 871 IESTGALPPEVLFTEAVKILEDKCERLIAELS 902
           IESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 IESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of CmaCh06G006670 vs. ExPASy TrEMBL
Match: A0A1S4DX61 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis melo OX=3656 GN=LOC103491032 PE=3 SV=1)

HSP 1 Score: 711.8 bits (1836), Expect = 3.5e-201
Identity = 354/392 (90.31%), Postives = 370/392 (94.39%), Query Frame = 0


Query: 511 MSGEDKNLH-SMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIH 570
           MSG+DKNLH  M+ES+SEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECK DAPIH
Sbjct: 1   MSGKDKNLHIMMTESESEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKGDAPIH 60

Query: 571 TDTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILI 630
           TDTIQYSGA+AS+G DNSLRLD+FR NFKIEVI+LK DD+EFDMIGIDP+LANAFRRILI
Sbjct: 61  TDTIQYSGAFASMGFDNSLRLDNFRNNFKIEVINLKGDDIEFDMIGIDPALANAFRRILI 120

Query: 631 AEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLH 690
           AEVPTMAIEKVL ANNTSIVQDEVLAHRLGLIPIRVDPRLF+YSDKD PNE NTIVFRLH
Sbjct: 121 AEVPTMAIEKVLFANNTSIVQDEVLAHRLGLIPIRVDPRLFKYSDKDAPNENNTIVFRLH 180

Query: 691 VRCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPI 750
            RCERGKPRLT  SEALTWLPNGSEFPLVSDKS+ NSKP+TYTSFSCSQD LPEF+ N I
Sbjct: 181 ARCERGKPRLTVKSEALTWLPNGSEFPLVSDKSIPNSKPQTYTSFSCSQDKLPEFSKNSI 240

Query: 751 GPKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELA 810
           GPKD DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEV+LLEEIEDELA
Sbjct: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVLLLEEIEDELA 300

Query: 811 EELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFK 870
           EELK KCPVNVFDIEDIA GKKRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFK
Sbjct: 301 EELKRKCPVNVFDIEDIA-GKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFK 360

Query: 871 IESTGALPPEVLFTEAVKILEDKCERLIAELS 902
           IESTGALPP VLFTEAVKILEDKCERLIAELS
Sbjct: 361 IESTGALPPNVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of CmaCh06G006670 vs. ExPASy TrEMBL
Match: A0A6J1DXI7 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3673 GN=LOC111025015 PE=3 SV=1)

HSP 1 Score: 703.7 bits (1815), Expect = 9.6e-199
Identity = 347/381 (91.08%), Postives = 363/381 (95.28%), Query Frame = 0


Query: 521 MSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAYA 580
           MS+S+SEQ   GKEGIEWIMNLPDVPMKLPPH+E+QRTRVECKADAPIHTDTIQYSGAYA
Sbjct: 1   MSDSESEQV-AGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYA 60

Query: 581 SLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIAEVPTMAIEKV 640
           S+G+DNSLRLD FR NFKIEVIDL EDD+EFDMIGIDP+LANAFRRILIAEVPTMAIEKV
Sbjct: 61  SMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKV 120

Query: 641 LVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHVRCERGKPRLT 700
           LVANNTS++QDEVLAHRLGLIPI VDPRLFEYSDKDTPNEKNTIVFRLH RCERGKPRLT
Sbjct: 121 LVANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLT 180

Query: 701 ATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIGPKDGDIILAR 760
            TS+ LTWLPNGSEFPLVSDKSV NSKPKTYTSFSCSQDTLPEF+NN IGPKD DII+AR
Sbjct: 181 VTSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIAR 240

Query: 761 LSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKNKCPVNV 820
           L  GQEIELEAHAVKGMGKTHAKWSPVATAWY+MLPEVVL EEIEDELAEELK KCPV+V
Sbjct: 241 LGPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDV 300

Query: 821 FDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEV 880
           FDIEDIANGKKRA VARPR+CTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEV
Sbjct: 301 FDIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEV 360

Query: 881 LFTEAVKILEDKCERLIAELS 902
           LFTEAVKILEDKCERLIAELS
Sbjct: 361 LFTEAVKILEDKCERLIAELS 380

[Close]

BLAST of CmaCh06G006670 vs. NCBI nr
Match: KAG6596753.1 (DNA-directed RNA polymerases I and III subunit RPAC1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1110.1 bits (2870), Expect = 0.0e+00
Identity = 591/680 (86.91%), Postives = 611/680 (89.85%), Query Frame = 0


Query: 225 SQKYSSRDIASHTTLKPSFAKTAGAGAAEIEVGRVIGVSFGILLFWLKPPSRRKEGQDTH 284
           +++   +DIASHTTLKP                                   RKEGQDTH
Sbjct: 29  AEETRKKDIASHTTLKP-----------------------------------RKEGQDTH 88

Query: 285 DELQRRNLRDELEDRERRHFSSKNKSYDDRDHRKGSQLLLEGGKRDIEDRIIPRSLDADD 344
           DELQRRNLRDELEDRERRHFSSKNKSYDDRDHRKGSQLLLEGGKRDIEDRIIPRSLDADD
Sbjct: 89  DELQRRNLRDELEDRERRHFSSKNKSYDDRDHRKGSQLLLEGGKRDIEDRIIPRSLDADD 148

Query: 345 SDVDVKSDNESDDDEDDDDEDDTEALLAELEQIKKERAEEKLRKERQEREEELKVKEAEL 404
           SDVDVKSDNESDDDEDDDDEDDTEALLAELEQIKKERAEEKLRKERQEREEELKVKEAEL
Sbjct: 149 SDVDVKSDNESDDDEDDDDEDDTEALLAELEQIKKERAEEKLRKERQEREEELKVKEAEL 208

Query: 405 LRGNPLLNEQPASFSVKRRWDDDVVFKNQARGETKTPKRFINDTIRNDFHRKFLHKFSGT 464
           LRGNPLLNEQPASFSVKRRWDDDVVFKNQARGETKTPKRFINDTIRNDFHRKFLHK+   
Sbjct: 209 LRGNPLLNEQPASFSVKRRWDDDVVFKNQARGETKTPKRFINDTIRNDFHRKFLHKYLVP 268

Query: 465 LLNDFNDVKYRNKDLVSAVPFSAAAAVVILEFASP---PCCVSLRRRFIMSGEDKNLHSM 524
           L    + +    +   S  P S++ ++++L  A+        SL  RFIMSG+DKNLH+M
Sbjct: 269 LKPSLSRLN-PPQPCRSVPPPSSSFSILLLRRAASFFVDLLPSLGLRFIMSGKDKNLHNM 328

Query: 525 SESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAYAS 584
           SESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAYAS
Sbjct: 329 SESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAYAS 388

Query: 585 LGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIAEVPTMAIEKVL 644
           LGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIAEVPTMAIEKVL
Sbjct: 389 LGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIAEVPTMAIEKVL 448

Query: 645 VANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHVRCERGKPRLTA 704
           VANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHVRCERGKPRLTA
Sbjct: 449 VANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHVRCERGKPRLTA 508

Query: 705 TSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIGPKDGDIILARL 764
           TS+ALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQDTLPEFANNPIGPKDGDIILARL
Sbjct: 509 TSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIGPKDGDIILARL 568

Query: 765 SSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKNKCPVNVF 824
           SSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAEELKNKCPVNVF
Sbjct: 569 SSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAEELKNKCPVNVF 628

Query: 825 DIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVL 884
           DIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVL
Sbjct: 629 DIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVL 672

Query: 885 FTEAVKILEDKCERLIAELS 902
           FTEAVKILEDKCERLIAELS
Sbjct: 689 FTEAVKILEDKCERLIAELS 672

[Close]

BLAST of CmaCh06G006670 vs. NCBI nr
Match: XP_023005438.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita maxima])

HSP 1 Score: 784.3 bits (2024), Expect = 1.2e-222
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0


Query: 511 MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 570
           MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT
Sbjct: 1   MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 571 DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 630
           DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 631 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 690
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 691 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 750
           RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG
Sbjct: 181 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 751 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 810
           PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 811 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 870
           ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 871 ESTGALPPEVLFTEAVKILEDKCERLIAELS 902
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of CmaCh06G006670 vs. NCBI nr
Match: XP_022936430.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_022936440.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_022936448.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata])

HSP 1 Score: 777.7 bits (2007), Expect = 1.1e-220
Identity = 386/391 (98.72%), Postives = 391/391 (100.00%), Query Frame = 0


Query: 511 MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 570
           MSG+DKNLH+MSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 571 DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 630
           DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 631 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 690
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 691 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 750
           RCERGKPRLTATS+ALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQDTLPEFANNPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 751 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 810
           PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 300

Query: 811 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 870
           ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 871 ESTGALPPEVLFTEAVKILEDKCERLIAELS 902
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of CmaCh06G006670 vs. NCBI nr
Match: XP_023540473.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo] >XP_023540474.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 776.9 bits (2005), Expect = 1.8e-220
Identity = 386/391 (98.72%), Postives = 390/391 (99.74%), Query Frame = 0


Query: 511 MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 570
           MSG+DKNLH+MSESDSE EDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEHEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 571 DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 630
           DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 631 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 690
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 691 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 750
           RCERGKPRLTATS+ALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQDTLPEFANNPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 751 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 810
           PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 811 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 870
           ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 871 ESTGALPPEVLFTEAVKILEDKCERLIAELS 902
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of CmaCh06G006670 vs. NCBI nr
Match: KAG7028290.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 768.5 bits (1983), Expect = 6.6e-218
Identity = 384/391 (98.21%), Postives = 389/391 (99.49%), Query Frame = 0


Query: 511 MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 570
           MSG+ KNLH+MSESDSEQ DVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT
Sbjct: 1   MSGKGKNLHNMSESDSEQ-DVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 571 DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 630
           DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 631 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 690
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 691 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 750
           RCERGKPRLTATS+ALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQDTLPEFANNPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 751 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 810
           PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 300

Query: 811 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 870
           ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 871 ESTGALPPEVLFTEAVKILEDKCERLIAELS 902
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 390

[Close]

BLAST of CmaCh06G006670 vs. TAIR 10
Match: AT1G60620.1 (RNA polymerase I subunit 43 )

HSP 1 Score: 505.8 bits (1301), Expect = 7.4e-143
Identity = 251/365 (68.77%), Postives = 296/365 (81.10%), Query Frame = 0


Query: 539 IMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAYASLGIDNSLRLDSFRKNFK 598
           I +LPDVP  LPPH+ELQRTRV CK D+ IH   I +SGAY+S+G+DNS+RL++F ++FK
Sbjct: 23  IFDLPDVPTGLPPHLELQRTRVVCKKDSNIHPTAITFSGAYSSMGVDNSVRLENFSEDFK 82

Query: 599 IEVIDLKEDDMEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRL 658
           ++VI L E DM FDMIG+   +ANAFRRIL+AE+P+MAIEKV VANNTS++QDEVLAHRL
Sbjct: 83  VDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRL 142

Query: 659 GLIPIRVDPRLFEY-SDKDTPNEKNTIVFRLHVRCERGKPRLTATSEALTWLPNGSEFPL 718
           GLIPI  DPRLFEY S+ D PNEKNTIVF+LHV+C +G PR    +  L WLPNGSE  L
Sbjct: 143 GLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLPNGSE--L 202

Query: 719 VSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIGPKDGDIILARLSSGQEIELEAHAVKGM 778
           + +   S + PKTYTSF+ SQD+ PEFA NPI P   DI++A+L  GQEIELEAHAVKG+
Sbjct: 203 IKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHAVKGI 262

Query: 779 GKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKNKCPVNVFDIEDIANGKKRATVAR 838
           GKTHAKWSPVATAWYRMLPEVVLL+E E + AEEL   CP  VFDIED+  G+KRATVAR
Sbjct: 263 GKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATVAR 322

Query: 839 PRACTLCRECIR-GEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERL 898
           PR C+LCRECIR G  WE +V LRRVK+HFIF IESTG+ PPEVLF EAVKILEDKCER+
Sbjct: 323 PRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILEDKCERV 382

Query: 899 IAELS 902
           I+ELS
Sbjct: 383 ISELS 385

[Close]

BLAST of CmaCh06G006670 vs. TAIR 10
Match: AT1G60850.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 476.9 bits (1226), Expect = 3.7e-134
Identity = 240/360 (66.67%), Postives = 285/360 (79.17%), Query Frame = 0


Query: 539 IMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAY-ASLGIDNSLRLDSFRKNF 598
           I +LPDVP  LPPH++ Q+TRV  K +AP HT +  YSG Y +S   D++++L +F  NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 599 KIEVIDLKEDDMEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHR 658
           K++V+ L + DMEFDMIGID + ANAFRRILIAEVP+MAIEKVL+A NTS++ DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 659 LGLIPIRVDPRLFEY-SDKDTPNEKNTIVFRLHVRCERGKPRLTATSEALTWLPNGSEFP 718
           +GLIPI  DPRLFEY S+ D  NEKNTIVF+LHV+C + +PRL   +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 719 LVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIGPKDGDIILARLSSGQEIELEAHAVKG 778
           L+ +     SKPKTYTSFSCSQD+LPEFANNPI P D DI++A+L+ GQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 779 MGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKNKCPVNVFDIEDIANGKKRATVA 838
           +GKTHAKWSPV TAWYRM PEVVL  E+EDELAE L N CP NVFDIED+  GKKRATVA
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVA 314

Query: 839 RPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERL 897
           +PR CTLC+EC+R +     V L  VK+HFIF IESTG+LPPEVLFTEAVKILE KCE +
Sbjct: 315 QPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372

[Close]

BLAST of CmaCh06G006670 vs. TAIR 10
Match: AT1G60850.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 476.9 bits (1226), Expect = 3.7e-134
Identity = 240/360 (66.67%), Postives = 285/360 (79.17%), Query Frame = 0


Query: 539 IMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAY-ASLGIDNSLRLDSFRKNF 598
           I +LPDVP  LPPH++ Q+TRV  K +AP HT +  YSG Y +S   D++++L +F  NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 599 KIEVIDLKEDDMEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHR 658
           K++V+ L + DMEFDMIGID + ANAFRRILIAEVP+MAIEKVL+A NTS++ DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 659 LGLIPIRVDPRLFEY-SDKDTPNEKNTIVFRLHVRCERGKPRLTATSEALTWLPNGSEFP 718
           +GLIPI  DPRLFEY S+ D  NEKNTIVF+LHV+C + +PRL   +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 719 LVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIGPKDGDIILARLSSGQEIELEAHAVKG 778
           L+ +     SKPKTYTSFSCSQD+LPEFANNPI P D DI++A+L+ GQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 779 MGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKNKCPVNVFDIEDIANGKKRATVA 838
           +GKTHAKWSPV TAWYRM PEVVL  E+EDELAE L N CP NVFDIED+  GKKRATVA
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVA 314

Query: 839 RPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERL 897
           +PR CTLC+EC+R +     V L  VK+HFIF IESTG+LPPEVLFTEAVKILE KCE +
Sbjct: 315 QPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372

[Close]

BLAST of CmaCh06G006670 vs. TAIR 10
Match: AT1G60850.3 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 342.4 bits (877), Expect = 1.1e-93
Identity = 172/262 (65.65%), Postives = 208/262 (79.39%), Query Frame = 0


Query: 539 IMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAY-ASLGIDNSLRLDSFRKNF 598
           I +LPDVP  LPPH++ Q+TRV  K +AP HT +  YSG Y +S   D++++L +F  NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 599 KIEVIDLKEDDMEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHR 658
           K++V+ L + DMEFDMIGID + ANAFRRILIAEVP+MAIEKVL+A NTS++ DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 659 LGLIPIRVDPRLFEY-SDKDTPNEKNTIVFRLHVRCERGKPRLTATSEALTWLPNGSEFP 718
           +GLIPI  DPRLFEY S+ D  NEKNTIVF+LHV+C + +PRL   +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 719 LVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIGPKDGDIILARLSSGQEIELEAHAVKG 778
           L+ +     SKPKTYTSFSCSQD+LPEFANNPI P D DI++A+L+ GQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 779 MGKTHAKWSPVATAWYRMLPEV 799
           +GKTHAKWSPV TAWYRM PEV
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEV 274

[Close]

BLAST of CmaCh06G006670 vs. TAIR 10
Match: AT3G13200.1 (Cwf15 / Cwc15 cell cycle control family protein )

HSP 1 Score: 325.5 bits (833), Expect = 1.4e-88
Identity = 185/264 (70.08%), Postives = 209/264 (79.17%), Query Frame = 0


Query: 199 MTTAARPTWAPAKGGNEQGGTRIFGPSQKYSSRDIASHTTLKPSFAKTAGAGAAEIEVGR 258
           MTTAARPTWAPAKGGNEQGG RIFGPSQKYSSRD+A+HTTLKP                 
Sbjct: 1   MTTAARPTWAPAKGGNEQGGARIFGPSQKYSSRDVAAHTTLKP----------------- 60

Query: 259 VIGVSFGILLFWLKPPSRRKEGQDTHDELQRRNLRDELEDRERRHFSSKNKSY-DDRDHR 318
                             R+EGQ T +ELQ+ NLRDELE+RERRHFSSK+KSY DDRD R
Sbjct: 61  ------------------RREGQHTQEELQKINLRDELEERERRHFSSKDKSYNDDRDRR 120

Query: 319 KGSQLLLEGGKRDIEDRIIPRSLDADDSDVDVKSDNESDDDEDDDDEDDTEALLAELEQI 378
           +GSQLLLE  KRD E+RIIPRS+DADDSDVD+KSD++SDD+ DDDDEDDTEAL+AEL+QI
Sbjct: 121 RGSQLLLEDSKRDPEERIIPRSVDADDSDVDIKSDDDSDDESDDDDEDDTEALMAELDQI 180

Query: 379 KKERAEEKLRKERQEREEELKVKEAELLRGNPLLNEQPASFSVKRRWDDDVVFKNQARGE 438
           KKER EE+LRKE++++ EEL  KE ELL+GNPLLN  P SFSVKRRWDDDVVFKNQARGE
Sbjct: 181 KKERVEERLRKEKEQQMEELNAKEEELLKGNPLLN-TPTSFSVKRRWDDDVVFKNQARGE 228

Query: 439 TKTPKRFINDTIRNDFHRKFLHKF 462
            K PKRFINDTIRNDFHRKFLH++
Sbjct: 241 MKAPKRFINDTIRNDFHRKFLHRY 228

The following BLAST results are available for this feature:

BLAST of CmaCh06G006670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32L22	4.3e-79	48.29	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=PO...	[more]
P52432	8.1e-78	48.00	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN...	[more]
O15160	1.1e-77	47.14	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=...	[more]
Q54SN4	1.1e-71	42.61	DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum...	[more]
O94616	1.4e-66	39.72	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pomb...	[more]

BLAST of CmaCh06G006670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L269	5.6e-223	100.00	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1FDA3	5.2e-221	98.72	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=36...	[more]
A0A0A0L637	2.4e-202	90.82	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis sativus OX=3659 ...	[more]
A0A1S4DX61	3.5e-201	90.31	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1DXI7	9.6e-199	91.08	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3...	[more]

BLAST of CmaCh06G006670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596753.1	0.0e+00	86.91	DNA-directed RNA polymerases I and III subunit RPAC1, partial [Cucurbita argyros...	[more]
XP_023005438.1	1.2e-222	100.00	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita maxima]	[more]
XP_022936430.1	1.1e-220	98.72	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_02...	[more]
XP_023540473.1	1.8e-220	98.72	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo...	[more]
KAG7028290.1	6.6e-218	98.21	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita argyrosperma sub...	[more]

BLAST of CmaCh06G006670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60620.1	7.4e-143	68.77	RNA polymerase I subunit 43	[more]
AT1G60850.2	3.7e-134	66.67	DNA-directed RNA polymerase family protein	[more]
AT1G60850.1	3.7e-134	66.67	DNA-directed RNA polymerase family protein	[more]
AT1G60850.3	1.1e-93	65.65	DNA-directed RNA polymerase family protein	[more]
AT3G13200.1	1.4e-88	70.08	Cwf15 / Cwc15 cell cycle control family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 367..403
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 297..346
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 297..366
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 347..366
None	No IPR available	PANTHER	PTHR11800:SF14	BNAA01G22480D PROTEIN	coord: 534..901
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 534..901
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 608..899 e-value: 6.8E-110 score: 381.1
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 610..893 e-value: 8.3E-26 score: 91.0
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 641..785 e-value: 2.9E-21 score: 75.9
IPR000549	Photosystem I PsaG/PsaK protein	PFAM	PF01241	PSI_PSAK	coord: 64..153 e-value: 1.1E-20 score: 73.3
IPR000549	Photosystem I PsaG/PsaK protein	PROSITE	PS01026	PHOTOSYSTEM_I_PSAGK	coord: 125..142
IPR023618	Photosystem I PsaG/PsaK domain, chloroplastic	GENE3D	1.10.286.40		coord: 64..158 e-value: 2.6E-46 score: 157.9
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 634..782 e-value: 3.7E-106 score: 356.6
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 633..786
IPR017494	Photosystem I PsaG, plant	TIGRFAM	TIGR03051	TIGR03051	coord: 67..154 e-value: 6.5E-42 score: 139.9
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 599..892 e-value: 3.7E-106 score: 356.6
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 595..900
IPR006973	Pre-mRNA-splicing factor Cwf15/Cwc15	PFAM	PF04889	Cwf_Cwc_15	coord: 199..461 e-value: 9.1E-73 score: 245.0
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 622..662
IPR033901	DNA-directed RNA polymerases I and III subunit AC40	CDD	cd07032	RNAP_I_II_AC40	coord: 597..899 e-value: 4.13931E-139 score: 413.913

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G006670.1	CmaCh06G006670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006360	transcription by RNA polymerase I
biological_process	GO:0006383	transcription by RNA polymerase III
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005666	RNA polymerase III complex
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0016020	membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001054	RNA polymerase I activity
molecular_function	GO:0001056	RNA polymerase III activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity