CmaCh06G006490 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G006490
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr06: 3218478 .. 3218828 (+)
RNA-Seq Expression	CmaCh06G006490
Synteny	CmaCh06G006490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCTGAATTGCCTCTCGTGTCAACTCTTCTTGCAGAGATCGGACTCCAACAAAGACCTCGAGCAGAATGAATACTTCACCGATCAGGCCAAGTCGCCGGACAGAAGCTGGACGGGAAACCTCTCGTTTCGCCCTCCCACTCGCCAAAACAGCGACGGGTTTCGGGTCCGGACGGAGAATAAGGTGGCGCCGATGGGCCACCGCCGTCTTCACAGCACTGGCACCGTCGCTTTCGGCGGCCCTGGTAAGGAGCCGAGGCTGATTAGAAGCGCGGGGATGAGGAGGGATTGGAGCTTTGAGGATCTTCGAGCCATCCGAGAGGAAAAGGAATCATCTCCCAATTCCTAA

mRNA sequence

ATGAGTCTGAATTGCCTCTCGTGTCAACTCTTCTTGCAGAGATCGGACTCCAACAAAGACCTCGAGCAGAATGAATACTTCACCGATCAGGCCAAGTCGCCGGACAGAAGCTGGACGGGAAACCTCTCGTTTCGCCCTCCCACTCGCCAAAACAGCGACGGGTTTCGGGTCCGGACGGAGAATAAGGTGGCGCCGATGGGCCACCGCCGTCTTCACAGCACTGGCACCGTCGCTTTCGGCGGCCCTGGTAAGGAGCCGAGGCTGATTAGAAGCGCGGGGATGAGGAGGGATTGGAGCTTTGAGGATCTTCGAGCCATCCGAGAGGAAAAGGAATCATCTCCCAATTCCTAA

Coding sequence (CDS)

ATGAGTCTGAATTGCCTCTCGTGTCAACTCTTCTTGCAGAGATCGGACTCCAACAAAGACCTCGAGCAGAATGAATACTTCACCGATCAGGCCAAGTCGCCGGACAGAAGCTGGACGGGAAACCTCTCGTTTCGCCCTCCCACTCGCCAAAACAGCGACGGGTTTCGGGTCCGGACGGAGAATAAGGTGGCGCCGATGGGCCACCGCCGTCTTCACAGCACTGGCACCGTCGCTTTCGGCGGCCCTGGTAAGGAGCCGAGGCTGATTAGAAGCGCGGGGATGAGGAGGGATTGGAGCTTTGAGGATCTTCGAGCCATCCGAGAGGAAAAGGAATCATCTCCCAATTCCTAA

Protein sequence

MSLNCLSCQLFLQRSDSNKDLEQNEYFTDQAKSPDRSWTGNLSFRPPTRQNSDGFRVRTENKVAPMGHRRLHSTGTVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEKESSPNS

Homology

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BLAST of CmaCh06G006490 vs. ExPASy TrEMBL
Match: A0A6J1GL99 (uncharacterized protein LOC111454968 OS=Cucurbita moschata OX=3662 GN=LOC111454968 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 6.8e-57
Identity = 111/116 (95.69%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MSLNCLSCQLFLQRSDSNKDLEQNEYFTDQAKSPDRSWTGNLSFRPPTRQNSDGFRVRTE 60
           MSLNCLSCQLFLQRSDS+KDLEQ+EYFTDQAKSPDRSW+GNLSFRPPTRQNSDGFRVRTE
Sbjct: 1   MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRTE 60

Query: 61  NKVAPMGHRRLHSTGTVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEKESSPNS 117
           NKVAPMGHRRLHSTG VAFGGPGKEPRLIRSAGMRRDWSFEDLRAIRE+KESSPNS
Sbjct: 61  NKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDKESSPNS 116

[Close]

BLAST of CmaCh06G006490 vs. ExPASy TrEMBL
Match: A0A6J1L834 (uncharacterized protein LOC111500186 OS=Cucurbita maxima OX=3661 GN=LOC111500186 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-24
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 1   MSLNCLSCQLFLQRSDSNKDLEQ--NEYFTDQAKSPDRSWTGNLSFRPPTRQNSDGFRVR 60
           M+LNCLSCQL LQR+DS +D +     Y++ Q +   RSW+GNLSFRPP R   +  R  
Sbjct: 1   MTLNCLSCQL-LQRTDSERDPDPQLQNYYSGQIEPSGRSWSGNLSFRPPDRPKKEALRAL 60

Query: 61  TENKVAPMGHRRLHSTGTVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEK 111
            E++  P+  RRLHS+G ++ G   KEP+L+RS+GMRRDWSFEDLRAIREEK
Sbjct: 61  PEDQAPPVAPRRLHSSGPISLG--SKEPKLVRSSGMRRDWSFEDLRAIREEK 109

[Close]

BLAST of CmaCh06G006490 vs. ExPASy TrEMBL
Match: A0A0A0L198 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011635 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.0e-24
Identity = 72/123 (58.54%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 1   MSLNCLSCQLFLQRSDSNKDLE---QNEYFTDQAKSPDRSWTGNLSFRPPTRQNSD---- 60
           MSLNCLSCQ+ LQR+DS +  +   Q  Y +D+  S +RSW+GNL  RP           
Sbjct: 1   MSLNCLSCQI-LQRTDSERHRDRQVQTYYTSDEFNSSERSWSGNLCLRPNRGGGGGGGGR 60

Query: 61  GFRVRTENKVAPMGHRRLHSTGTVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEKESS 117
           GFR   +NKVAP+GHRR      V+FG  GKEPRLIRS+GMRRDWSFEDLRAIREEK+ S
Sbjct: 61  GFRGMADNKVAPIGHRR-----AVSFG--GKEPRLIRSSGMRRDWSFEDLRAIREEKQPS 115

[Close]

BLAST of CmaCh06G006490 vs. ExPASy TrEMBL
Match: A0A5A7UAS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001620 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.5e-23
Identity = 72/120 (60.00%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 1   MSLNCLSCQLFLQRSDSNKDLE---QNEYFTDQAKSPDRSWTGNLSFRPPTRQNSDG-FR 60
           MSLNCLSCQL LQR+DS +  +   Q  Y +D+     RSW+GNLS     RQN  G FR
Sbjct: 1   MSLNCLSCQL-LQRTDSERHRDRQIQTYYTSDEFDPSQRSWSGNLSL----RQNRGGVFR 60

Query: 61  VRTENKVAPMGHRRLHSTGTVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEKESSPNS 117
              +NKVAP+ HRR      V+FG  GKEPRL+RS+GMRRDWSFEDLR IREEKE SPNS
Sbjct: 61  GMADNKVAPVCHRR-----AVSFG--GKEPRLVRSSGMRRDWSFEDLRTIREEKEPSPNS 108

[Close]

BLAST of CmaCh06G006490 vs. ExPASy TrEMBL
Match: A0A1S3BJN6 (uncharacterized protein LOC103490783 OS=Cucumis melo OX=3656 GN=LOC103490783 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.5e-23
Identity = 72/120 (60.00%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 1   MSLNCLSCQLFLQRSDSNKDLE---QNEYFTDQAKSPDRSWTGNLSFRPPTRQNSDG-FR 60
           MSLNCLSCQL LQR+DS +  +   Q  Y +D+     RSW+GNLS     RQN  G FR
Sbjct: 1   MSLNCLSCQL-LQRTDSERHRDRQIQTYYTSDEFDPSQRSWSGNLSL----RQNRGGVFR 60

Query: 61  VRTENKVAPMGHRRLHSTGTVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEKESSPNS 117
              +NKVAP+ HRR      V+FG  GKEPRL+RS+GMRRDWSFEDLR IREEKE SPNS
Sbjct: 61  GMADNKVAPVCHRR-----AVSFG--GKEPRLVRSSGMRRDWSFEDLRTIREEKEPSPNS 108

[Close]

BLAST of CmaCh06G006490 vs. NCBI nr
Match: XP_022952265.1 (uncharacterized protein LOC111454968 [Cucurbita moschata] >KAG6596735.1 hypothetical protein SDJN03_09915, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028271.1 hypothetical protein SDJN02_09452, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.6 bits (584), Expect = 1.4e-56
Identity = 111/116 (95.69%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MSLNCLSCQLFLQRSDSNKDLEQNEYFTDQAKSPDRSWTGNLSFRPPTRQNSDGFRVRTE 60
           MSLNCLSCQLFLQRSDS+KDLEQ+EYFTDQAKSPDRSW+GNLSFRPPTRQNSDGFRVRTE
Sbjct: 1   MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRTE 60

Query: 61  NKVAPMGHRRLHSTGTVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEKESSPNS 117
           NKVAPMGHRRLHSTG VAFGGPGKEPRLIRSAGMRRDWSFEDLRAIRE+KESSPNS
Sbjct: 61  NKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDKESSPNS 116

[Close]

BLAST of CmaCh06G006490 vs. NCBI nr
Match: XP_023539506.1 (uncharacterized protein LOC111800149 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 3.1e-56
Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MSLNCLSCQLFLQRSDSNKDLEQNEYFTDQAKSPDRSWTGNLSFRPPTRQNSDGFRVRTE 60
           MSLNCLSCQLFLQRSDS+KDLEQ+EYFTDQAKSPDRSW+GNLSFRPPTRQNSDGFRVRTE
Sbjct: 1   MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRTE 60

Query: 61  NKVAPMGHRRLHSTGTVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEKESSPNS 117
           NKVAP GHRRLHSTG VAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEKESSPNS
Sbjct: 61  NKVAPTGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEKESSPNS 116

[Close]

BLAST of CmaCh06G006490 vs. NCBI nr
Match: XP_038905810.1 (uncharacterized protein LOC120091761 [Benincasa hispida])

HSP 1 Score: 126.3 bits (316), Expect = 1.7e-25
Identity = 71/116 (61.21%), Postives = 84/116 (72.41%), Query Frame = 0


Query: 1   MSLNCLSCQLFLQRSDSNKDLE---QNEYFTDQAKSPDRSWTGNLSFRPPTRQNSDGFRV 60
           MSLNCLSCQ+ LQR+DS +  +   Q  Y +D+  S +RSW+GNLSFRP  R N  GFR 
Sbjct: 1   MSLNCLSCQI-LQRTDSERHRDQQIQTYYASDEFDSSERSWSGNLSFRPHDRHNRGGFRG 60

Query: 61  RTENKVAPMGHRRLHSTGTVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEKESS 114
             ENKVAP+ HRR      V+FG  GKEPRL+RS+GMRRDWSFEDLR IREE+E S
Sbjct: 61  LPENKVAPISHRR-----AVSFG--GKEPRLVRSSGMRRDWSFEDLRTIREEREPS 108

[Close]

BLAST of CmaCh06G006490 vs. NCBI nr
Match: XP_023007608.1 (uncharacterized protein LOC111500186 [Cucurbita maxima])

HSP 1 Score: 122.5 bits (306), Expect = 2.4e-24
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 1   MSLNCLSCQLFLQRSDSNKDLEQ--NEYFTDQAKSPDRSWTGNLSFRPPTRQNSDGFRVR 60
           M+LNCLSCQL LQR+DS +D +     Y++ Q +   RSW+GNLSFRPP R   +  R  
Sbjct: 1   MTLNCLSCQL-LQRTDSERDPDPQLQNYYSGQIEPSGRSWSGNLSFRPPDRPKKEALRAL 60

Query: 61  TENKVAPMGHRRLHSTGTVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEK 111
            E++  P+  RRLHS+G ++ G   KEP+L+RS+GMRRDWSFEDLRAIREEK
Sbjct: 61  PEDQAPPVAPRRLHSSGPISLG--SKEPKLVRSSGMRRDWSFEDLRAIREEK 109

[Close]

BLAST of CmaCh06G006490 vs. NCBI nr
Match: KAG6577703.1 (hypothetical protein SDJN03_25277, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015746.1 hypothetical protein SDJN02_23384, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 5.4e-24
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 1   MSLNCLSCQLFLQRSDSNK--DLEQNEYFTDQAKSPDRSWTGNLSFRPPTRQNSDGFRVR 60
           M+LNCLSCQL LQR+DS +  D +   Y++ Q +   RSW+GNLSFRPP R   +  R  
Sbjct: 1   MTLNCLSCQL-LQRTDSERDPDPQHQNYYSVQIEPSGRSWSGNLSFRPPDRPKKEPLRAL 60

Query: 61  TENKVAPMGHRRLHSTGTVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEK 111
            E++  P+  RRLHS+G ++ G   KEP+L+RS+GMRRDWSFEDLRAIREEK
Sbjct: 61  PEDQAPPVAPRRLHSSGPISLG--SKEPKLVRSSGMRRDWSFEDLRAIREEK 109

[Close]

BLAST of CmaCh06G006490 vs. TAIR 10
Match: AT2G35215.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46770.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-11
Identity = 45/112 (40.18%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 1   MSLNCLSCQLFLQRSDSNKDLEQNEYFTDQAKSPDRSWTGNL---SFRPPTRQNSDGFRV 60
           MSLNCL+C + LQR+DS++D+   +         D S+  N    +F    R  S    V
Sbjct: 1   MSLNCLACHI-LQRTDSDRDMGSRK---------DSSFKENFATSAFEKMVRNRSSLPVV 60

Query: 61  RTENKVAPMGHRRLHSTGTVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREE 110
           R  NK    GHRRL+S   + + G   EP+L+RS+G+RRDWSFEDL+  +++
Sbjct: 61  RRVNK----GHRRLYSADIMVY-GELDEPKLVRSSGIRRDWSFEDLKKHKDQ 97

[Close]

BLAST of CmaCh06G006490 vs. TAIR 10
Match: AT5G46770.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-08
Identity = 49/129 (37.98%), Postives = 68/129 (52.71%), Query Frame = 0


Query: 1   MSLNCLSCQLFLQRSDSNKDLE-----------QNEYFTDQAKSP--DRSWTGNLSFRPP 60
           MSLNCLSCQ  L R+DSNKD++            N        +P   R+W+GNLS R  
Sbjct: 1   MSLNCLSCQA-LPRTDSNKDVDLSGPGPPRVEINNVLGKTCCVNPIGGRNWSGNLSPRIY 60

Query: 61  TRQNSDGFRVRTE-NKVAPMGHRRLHS-TGTVAFGGPGK--EPRLIRSAGMRRDWSFEDL 111
            +    G  +  +  KV  + H RL    G+     P +  +P+L+RS G+RR+WSFE+L
Sbjct: 61  EKIGRPGSSLAHKMKKVKKIHHVRLSGPVGSSPSNVPTRPEQPKLVRSTGVRRNWSFENL 120

The following BLAST results are available for this feature:

BLAST of CmaCh06G006490 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G006490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GL99	6.8e-57	95.69	uncharacterized protein LOC111454968 OS=Cucurbita moschata OX=3662 GN=LOC1114549...	[more]
A0A6J1L834	1.2e-24	56.25	uncharacterized protein LOC111500186 OS=Cucurbita maxima OX=3661 GN=LOC111500186...	[more]
A0A0A0L198	2.0e-24	58.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011635 PE=4 SV=1	[more]
A0A5A7UAS3	6.5e-23	60.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BJN6	6.5e-23	60.00	uncharacterized protein LOC103490783 OS=Cucumis melo OX=3656 GN=LOC103490783 PE=...	[more]

BLAST of CmaCh06G006490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952265.1	1.4e-56	95.69	uncharacterized protein LOC111454968 [Cucurbita moschata] >KAG6596735.1 hypothet...	[more]
XP_023539506.1	3.1e-56	95.69	uncharacterized protein LOC111800149 [Cucurbita pepo subsp. pepo]	[more]
XP_038905810.1	1.7e-25	61.21	uncharacterized protein LOC120091761 [Benincasa hispida]	[more]
XP_023007608.1	2.4e-24	56.25	uncharacterized protein LOC111500186 [Cucurbita maxima]	[more]
KAG6577703.1	5.4e-24	56.25	hypothetical protein SDJN03_25277, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh06G006490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35215.1	2.5e-11	40.18	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G46770.1	3.4e-08	37.98	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..88
None	No IPR available	PANTHER	PTHR36019	PLANT/PROTEIN	coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G006490.1	CmaCh06G006490.1	mRNA