CmaCh06G005990 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G005990
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ELL-associated factor 1-like
Location	Cma_Chr06: 2889457 .. 2889846 (-)
RNA-Seq Expression	CmaCh06G005990
Synteny	CmaCh06G005990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAGAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGTCCGCGATAAAACTCACTGCGTTCCTCCGCCTCTGCGTCTCTCGTCGACAAAATTCCCGACGGCTGCGATCATTCGGTTCCGACGATCGGACGGTAGGGCTACGGAGTTTCCTAGAAGATGAGAGAATAGTTGAGAATCGTTCCGTCAGAAAGCTTGAGCGTGCTTCGAGTTCAAGCTATGTAAATTTTGAAGACGATGTCGATAAGCGATCTCAGATTTTTATCGATAAATTTCTCCGTCAATTGAGGTTAGAACGACAAATTTCTTTGCAATTAAGATACTGTAGAATCAATAGCTCTGAAACGGAATCTGAAGAGAAATCGCCGCCGTATCCGTCGATTCGATGA

mRNA sequence

ATGGCACAGAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGTCCGCGATAAAACTCACTGCGTTCCTCCGCCTCTGCGTCTCTCGTCGACAAAATTCCCGACGGCTGCGATCATTCGGTTCCGACGATCGGACGGTAGGGCTACGGAGTTTCCTAGAAGATGAGAGAATAGTTGAGAATCGTTCCGTCAGAAAGCTTGAGCGTGCTTCGAGTTCAAGCTATGTAAATTTTGAAGACGATGTCGATAAGCGATCTCAGATTTTTATCGATAAATTTCTCCGTCAATTGAGGTTAGAACGACAAATTTCTTTGCAATTAAGATACTGTAGAATCAATAGCTCTGAAACGGAATCTGAAGAGAAATCGCCGCCGTATCCGTCGATTCGATGA

Coding sequence (CDS)

ATGGCACAGAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGTCCGCGATAAAACTCACTGCGTTCCTCCGCCTCTGCGTCTCTCGTCGACAAAATTCCCGACGGCTGCGATCATTCGGTTCCGACGATCGGACGGTAGGGCTACGGAGTTTCCTAGAAGATGAGAGAATAGTTGAGAATCGTTCCGTCAGAAAGCTTGAGCGTGCTTCGAGTTCAAGCTATGTAAATTTTGAAGACGATGTCGATAAGCGATCTCAGATTTTTATCGATAAATTTCTCCGTCAATTGAGGTTAGAACGACAAATTTCTTTGCAATTAAGATACTGTAGAATCAATAGCTCTGAAACGGAATCTGAAGAGAAATCGCCGCCGTATCCGTCGATTCGATGA

Protein sequence

MAQKKSPLLFRLKKSAIKLTAFLRLCVSRRQNSRRLRSFGSDDRTVGLRSFLEDERIVENRSVRKLERASSSSYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRINSSETESEEKSPPYPSIR

Homology

[Close]

BLAST of CmaCh06G005990 vs. ExPASy TrEMBL
Match: A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 8.7e-37
Identity = 94/130 (72.31%), Postives = 105/130 (80.77%), Query Frame = 0


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLR----LCVSRRQNSRRLRSFGSDDRTVGLRSFLEDER 60
           MA+KKSPL+ RLKK+  K+TA LR    LC++RR+ S RLRSF   DRTVGLRSFLEDE 
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDEE 60

Query: 61  IVENRSVRKLERASSSSYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRINSSET 120
           I EN S+R+LERASS  Y N EDDVDKRSQIFID FLR+LRLERQISLQLRY RINSS T
Sbjct: 61  IGENCSMRRLERASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSGT 120

Query: 121 ESEEKSPPYP 127
           E EE+SPP P
Sbjct: 121 EDEERSPPPP 130

[Close]

BLAST of CmaCh06G005990 vs. ExPASy TrEMBL
Match: A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.1e-31
Identity = 82/125 (65.60%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVSRRQNSRRLRSFGSDDRTVGLRSFLEDE-RIVE 60
           MA+KKSP+  RLKK+ IKLTA +RLC+  R+ S+RL SF SDDR VG+R  LED+ RI E
Sbjct: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60

Query: 61  NRSVRKLERASSSSYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRINSSETESE 120
           N   RKLERASSS Y  +E+DVD+R++IFI+ F RQLRLERQISLQLRY R+NS ETE E
Sbjct: 61  NSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYE 120

Query: 121 EKSPP 125
           + SPP
Sbjct: 121 QISPP 125

[Close]

BLAST of CmaCh06G005990 vs. ExPASy TrEMBL
Match: A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.0e-29
Identity = 80/125 (64.00%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVSRRQNSRRLRSFGS-DDRTVGLRSFLEDE-RIV 60
           MA+KKSP+  RL+K+ +KL A LRLC+  RQ SRRL SF S DD+ VG+R  LED+ RI 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  ENRSVRKLERASSSSYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRINSSETES 120
           E+  VRKLERASSS Y  +E+DVD+R++IFI+ F RQLRLERQISLQLRY R+NS ETE 
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EEKSP 124
           E++SP
Sbjct: 121 EQRSP 125

[Close]

BLAST of CmaCh06G005990 vs. ExPASy TrEMBL
Match: A0A1R3J730 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.4e-12
Identity = 56/125 (44.80%), Postives = 73/125 (58.40%), Query Frame = 0


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLRL--------CVSRRQNSRRLRSFGSDDRTVGLRSFL 60
           M ++   +L R KK+  KL + L L        C  RR + R   +   +DR +GL SFL
Sbjct: 1   MGREDGSILSRFKKAVKKLNSLLSLDLTKWRLSCFLRRASGRWRPTLSFNDR-LGLHSFL 60

Query: 61  EDERIVENRSVRKLERASSSSYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRIN 118
           EDE      SVR L+R    SY   +DDVDKR++IFI  F RQL LERQ+SL+LRYCR  
Sbjct: 61  EDEETNGRSSVRALQRV--RSYGAGDDDVDKRAEIFISNFRRQLWLERQVSLELRYCRTT 120

[Close]

BLAST of CmaCh06G005990 vs. ExPASy TrEMBL
Match: A0A1R3IU67 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09786 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 9.7e-12
Identity = 55/125 (44.00%), Postives = 73/125 (58.40%), Query Frame = 0


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLRL--------CVSRRQNSRRLRSFGSDDRTVGLRSFL 60
           M ++   +L R KK+  KL + L L        C  RR + +   +   +DR +GL SFL
Sbjct: 1   MGREDGSILSRFKKAVKKLNSLLSLDLTKWRLSCFLRRASGKWRPTLSFNDR-LGLHSFL 60

Query: 61  EDERIVENRSVRKLERASSSSYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRIN 118
           EDE      SVR L+R    SY   +DDVDKR++IFI  F RQL LERQ+SL+LRYCR  
Sbjct: 61  EDEETNGTSSVRALQRV--RSYGAGDDDVDKRAEIFISNFRRQLWLERQVSLELRYCRTR 120

[Close]

BLAST of CmaCh06G005990 vs. NCBI nr
Match: KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237.3 bits (604), Expect = 7.5e-59
Identity = 125/129 (96.90%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVSRRQNSRRLRSFGSDDRTVGLRSFLEDERIVEN 60
           MAQKKSPLLFRLKKSAIKLTAFLRLCV+RRQNSRRLRSFGSDDRT GLRSFLEDERIVEN
Sbjct: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDDRTAGLRSFLEDERIVEN 60

Query: 61  RSVRKLERASSSSYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRINSSETESEE 120
           RSVRKLERASS+SYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCR+NSSETESEE
Sbjct: 61  RSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESEE 120

Query: 121 KSPPYPSIR 130
           KSPPYPSIR
Sbjct: 121 KSPPYPSIR 129

[Close]

BLAST of CmaCh06G005990 vs. NCBI nr
Match: XP_022145292.1 (uncharacterized protein LOC111014780 [Momordica charantia])

HSP 1 Score: 162.9 bits (411), Expect = 1.8e-36
Identity = 94/130 (72.31%), Postives = 105/130 (80.77%), Query Frame = 0


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLR----LCVSRRQNSRRLRSFGSDDRTVGLRSFLEDER 60
           MA+KKSPL+ RLKK+  K+TA LR    LC++RR+ S RLRSF   DRTVGLRSFLEDE 
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDEE 60

Query: 61  IVENRSVRKLERASSSSYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRINSSET 120
           I EN S+R+LERASS  Y N EDDVDKRSQIFID FLR+LRLERQISLQLRY RINSS T
Sbjct: 61  IGENCSMRRLERASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSGT 120

Query: 121 ESEEKSPPYP 127
           E EE+SPP P
Sbjct: 121 EDEERSPPPP 130

[Close]

BLAST of CmaCh06G005990 vs. NCBI nr
Match: KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-31
Identity = 82/125 (65.60%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVSRRQNSRRLRSFGSDDRTVGLRSFLEDE-RIVE 60
           MA+KKSP+  RLKK+ IKLTA +RLC+  R+ S+RL SF SDDR VG+R  LED+ RI E
Sbjct: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60

Query: 61  NRSVRKLERASSSSYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRINSSETESE 120
           N   RKLERASSS Y  +E+DVD+R++IFI+ F RQLRLERQISLQLRY R+NS ETE E
Sbjct: 61  NSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYE 120

Query: 121 EKSPP 125
           + SPP
Sbjct: 121 QISPP 125

[Close]

BLAST of CmaCh06G005990 vs. NCBI nr
Match: KAG7015798.1 (hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 6.2e-29
Identity = 79/127 (62.20%), Postives = 94/127 (74.02%), Query Frame = 0


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVSRRQNSRRLRSFGSDDRTVGLRSFLEDERIVEN 60
           MA+  +P++ R+KK+  KLTAF+RLC   R  SRR+RSF SD RT GLRS L DE IVE 
Sbjct: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 60

Query: 61  RSVRKLERASSSSYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRINSSETESEE 120
            SVRKLER  SS   + EDDVD+R+QIFID F RQL LERQISL+LRY  INSSE + E 
Sbjct: 61  CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEA 120

Query: 121 KSPPYPS 128
           +SPP+ S
Sbjct: 121 RSPPFSS 127

[Close]

BLAST of CmaCh06G005990 vs. NCBI nr
Match: KAG6577759.1 (hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 3.1e-28
Identity = 78/127 (61.42%), Postives = 93/127 (73.23%), Query Frame = 0


Query: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVSRRQNSRRLRSFGSDDRTVGLRSFLEDERIVEN 60
           MA+  +P++ R+KK+  KLTAF+RLC   R  SRR+RSF SD RT GLRS L DE IVE 
Sbjct: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 60

Query: 61  RSVRKLERASSSSYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRINSSETESEE 120
            SVRKLER  SS   + EDDVD+R+QIFID F RQL LERQISL+L Y  INSSE + E 
Sbjct: 61  CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLMYYGINSSEIDYEA 120

Query: 121 KSPPYPS 128
           +SPP+ S
Sbjct: 121 RSPPFSS 127

[Close]

BLAST of CmaCh06G005990 vs. TAIR 10
Match: AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 8.7e-05
Identity = 27/72 (37.50%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 42  DDRTVGLRSFLEDERIVENRSVRKLERASSSSYVNFEDDVDKRSQIFIDKFLRQLRLERQ 101
           +DR     +F E+E      S   L R  S    + ++D+D ++++FI  F RQL++ERQ
Sbjct: 52  NDRPGLTAAFTENEPDSTGSSRGALYRTVSYDQ-SSDEDIDNKAEMFIANFYRQLKIERQ 111

Query: 102 ISLQLRYCRINS 114
           ISL+L+YC+ N+
Sbjct: 112 ISLELKYCQGNN 122

The following BLAST results are available for this feature:

BLAST of CmaCh06G005990 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G005990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CW64	8.7e-37	72.31	uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A5D3CHZ5	1.1e-31	65.60	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L4Z8	3.0e-29	64.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1	[more]
A0A1R3J730	4.4e-12	44.80	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1	[more]
A0A1R3IU67	9.7e-12	44.00	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09786 PE=4 ...	[more]

BLAST of CmaCh06G005990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596691.1	7.5e-59	96.90	hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022145292.1	1.8e-36	72.31	uncharacterized protein LOC111014780 [Momordica charantia]	[more]
KAA0052985.1	2.3e-31	65.60	hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144...	[more]
KAG7015798.1	6.2e-29	62.20	hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577759.1	3.1e-28	61.42	hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh06G005990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57510.1	8.7e-05	37.50	unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 78..110 e-value: 2.9E-6 score: 26.7
None	No IPR available	PANTHER	PTHR33098	COTTON FIBER (DUF761)	coord: 6..117
None	No IPR available	PANTHER	PTHR33098:SF64	OS08G0448100 PROTEIN	coord: 6..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G005990.1	CmaCh06G005990.1	mRNA