CmaCh06G005950 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G005950
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr06: 2880557 .. 2882780 (-)
RNA-Seq Expression	CmaCh06G005950
Synteny	CmaCh06G005950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCACTCCGGTGAGTGCATTGACCACCGCTGAACCGCCAAGAAGCAACATGGCTGTTACTAGGATGTTTGTCATGAAGCAGAAAACAAGGAAGACTATATGTGCAGGAGTTCCCCAACTGATAGATACCACACAGAAACATAGCCAAATAAGAGGCATGGCCAAAGGAGCAGAACAAAAACTTGTAGAACAACATGTAGATGGAACTTCCTAACTTACCGAGCTCTTACAATTTCACAAACTGTGTGAGCATTTGGGGCCTTCCTTTTGATCTCTATAGCCATTATTCCAAATAGAAGAACCTGAATCATTTGTCAATGCACTCATTTATCCACTAACACACTCACTGTACCTGTAACACCTGTAACGGCCTAAGTCCACTGCTAATAGATATCGTCCTCTTTAGGTTTTCCCTTCCGAGCTTCCCCTCAAGGTTTTAAAACGCATCTACTAGGAAGAGGTTTCCACACCCTTATAAGGAATGCTTCGTTCCCCTCCCAGCGTCCTTGCTGGCACACCGCCCGGTATCTGACTTTGATACCATTTGTAATAGCCAAAGCCCACCGCTAGTAGATGTTGTCCATTTCAACCCATTACGTATCGCCGCCAGCCTCGCGGTTTTAAAACGCGTCTACTATAGAGAGGATCTAGCCCTACTCCAACCAGTGACTAGTTGAAAGATAAAACTCAAAGAGCACAATATTTGCTAACGATGAACTTGGGCTATTACAACACCATAGTCGTCACTTGAAGTTGACTGATAGTTGTTTTGTTGTTATTGATCATCCTAACTTTTTTTCTTAATTCTTAGTGAAAACCAAATATAGAAATGATCAGAATAGCAAACTTAGCCCCTAATATTCTCCTAACTTCGACTAATAAGCTATAAGCTAAAAACTTGGGGATGAACTTGCCTGAATGGTAGCCCCACTAGCATACCAGAATGGTCCACTAACTCCATACTCCCAAGCAACATTGGAGCTCTGTAAAATGGTGGCAGCCCATGTCCACTTCATAAACAAACAAACCATTCATATCAGCCAAACCAAGCCAACCACATACACAAACCACAAACATAAGAATCTGCCAAAGTTACCTGAGACACAATCACACTAGCAATTAGCCCCGTCTTCACACTCCTGCCTGCTGTGTTGAACCATTCTGATGTCTTCTTACTCCCTATGTATCGATTCTCCAGCCATACCTGCACCACCCCGTTGTCAACAATTTAGTCTCTGAACTTTCGTTTATAACAATTTAGTTCATTTCGTAAGTAATTACTTCTTAGATGAACAAGGAGTAACAATCAGGGCTCAAAGAAGAGGAGGGCAAGAATTGGAGTGGAAAGTGAGGAAGCTAACCAAGAAAGATGTGAAGACAGCGAAAAAAGCTCCAAAGCCAAGAATAACAGAATAGCCAATGCCCTGATCAAGAACAGCCTGGCCGTTGAAGAAGCTGCTCTGCCGCACACAGCCGGCAGCCGTCGCTTGGTAGTACTTGTCGGCGAAGTCAAATGGTGGGCACTTAGGCACAGAAGCAGCCATGGTTATTGAACCAATGGAATAGCTTGATAGCTACCGCTAGTTAATGGCTTTAAACTCTTCAGCAGCTAAAGTGGACTTCAGTGAAGTTGACTTGCCAGACCTGTGAAAGAGAAGGCAAAGAAATGAGAAAAGTCTTTGAACAATGTACTGTTCACAATTTGAAATATCTTTTTTGTTCGTACGAGCTACGAGTTCAAAAGTTCGAATCTCTAGTCCCTATGAGTTTAAATCACAAACTCGAAACTGAAGAACCCGAACTCGAAGTTTGGCCCTTTCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTATGTAATTTGCTACTAAGAACTGTTTTTGAGTTGAAATCTTTGATGCAGATACTTATGGACAACTTGCAAGATGCAGCTCAGTCAAACAGGGCAGGAATCTTTTGGAGGTGGGCCAATTGGTATCTTTCTTGATGACATCAATTGAATATTATAAGAGGTAATTTTGCGTCTGAATGTTGATGAAGAACTTGTTGAGGCACTTAATTATAATAGTTGCTATATTTAAACAAGTATGCAGTGAACTGAATAAGAAAGCTATTAAATAGTTAAATTGTGTGCAAATTTGAACCGCCAAAGAACAATAAAATGCTAAACCAAGCTGGCTACCAGTCAAGTTTGTAATAAATTCAGTTGGCGACAGATCATAATTAA

mRNA sequence

ATGTTCACTCCGGTGAGTGCATTGACCACCGCTGAACCGCCAAGAAGCAACATGGCTGTTACTAGGATGTTTGTCATGAAGCAGAAAACAAGGAAGACTATATGTGCAGGAGTTCCCCAACTGATAGATACCACACAGAAACATAGCCAAATAAGAGGCATGGCCAAAGGAGCAGAACAAAAACTTGTAGAACAACATGAAGCTAACCAAGAAAGATGTGAAGACAGCGAAAAAAGCTCCAAAGCCAAGAATAACAGAATAGCCAATGCCCTGATCAAGAACAGCCTGGCCGTTGAAGAAGCTGCTCTGCCGCACACAGCCGGCAGCCGTCGCTTGGTAGTACTTGTCGGCGAAGTCAAATGGTGGGCACTTAGGCACAGAAGCAGCCATGATACTTATGGACAACTTGCAAGATGCAGCTCAGTCAAACAGGGCAGGAATCTTTTGGAGGTGGGCCAATTGTTGGCGACAGATCATAATTAA

Coding sequence (CDS)

ATGTTCACTCCGGTGAGTGCATTGACCACCGCTGAACCGCCAAGAAGCAACATGGCTGTTACTAGGATGTTTGTCATGAAGCAGAAAACAAGGAAGACTATATGTGCAGGAGTTCCCCAACTGATAGATACCACACAGAAACATAGCCAAATAAGAGGCATGGCCAAAGGAGCAGAACAAAAACTTGTAGAACAACATGAAGCTAACCAAGAAAGATGTGAAGACAGCGAAAAAAGCTCCAAAGCCAAGAATAACAGAATAGCCAATGCCCTGATCAAGAACAGCCTGGCCGTTGAAGAAGCTGCTCTGCCGCACACAGCCGGCAGCCGTCGCTTGGTAGTACTTGTCGGCGAAGTCAAATGGTGGGCACTTAGGCACAGAAGCAGCCATGATACTTATGGACAACTTGCAAGATGCAGCTCAGTCAAACAGGGCAGGAATCTTTTGGAGGTGGGCCAATTGTTGGCGACAGATCATAATTAA

Protein sequence

MFTPVSALTTAEPPRSNMAVTRMFVMKQKTRKTICAGVPQLIDTTQKHSQIRGMAKGAEQKLVEQHEANQERCEDSEKSSKAKNNRIANALIKNSLAVEEAALPHTAGSRRLVVLVGEVKWWALRHRSSHDTYGQLARCSSVKQGRNLLEVGQLLATDHN

Homology

[Close]

BLAST of CmaCh06G005950 vs. ExPASy TrEMBL
Match: A0A371EA15 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_58750 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.9e-06
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 2   FTPVSALTTAEPPRSNMAVTRMFVMKQKTRKTICAGVPQL 42
           FTPV+A TTAEPP SN+AVT +FV KQK RKT CA VPQL
Sbjct: 132 FTPVNAFTTAEPPSSNIAVTIIFVKKQKNRKTTCAEVPQL 171

[Close]

BLAST of CmaCh06G005950 vs. NCBI nr
Match: RDX62876.1 (hypothetical protein CR513_58750, partial [Mucuna pruriens])

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-05
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 2   FTPVSALTTAEPPRSNMAVTRMFVMKQKTRKTICAGVPQL 42
           FTPV+A TTAEPP SN+AVT +FV KQK RKT CA VPQL
Sbjct: 132 FTPVNAFTTAEPPSSNIAVTIIFVKKQKNRKTTCAEVPQL 171

The following BLAST results are available for this feature:

BLAST of CmaCh06G005950 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G005950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371EA15	9.9e-06	75.00	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_58750 P...	[more]

BLAST of CmaCh06G005950 vs. NCBI nr


Match Name	E-value	Identity	Description
RDX62876.1	2.0e-05	75.00	hypothetical protein CR513_58750, partial [Mucuna pruriens]	[more]

BLAST of CmaCh06G005950 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G005950.1	CmaCh06G005950.1	mRNA