CmaCh06G004940 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G004940
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	small RNA-binding protein 11, chloroplastic-like
Location	Cma_Chr06: 2319140 .. 2321936 (+)
RNA-Seq Expression	CmaCh06G004940
Synteny	CmaCh06G004940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGGCAGAATTGGGCTTCGAATCTTTTATACGACCACTCGTCGCCGTCGCTTCTCCAGTCCAACCTCCGGCCGCCATTTTTTCATCTCTCTTTACTCGAAGACACAAGGGCATAGGTTCACTCTGGTACTACTACTATGGCGGCAATCAGAAAAGCGATGGCGATTTCCTCCAATCGTTGTGTTCTTCCCTCTGTATTTACTCCGCCGTCTCGTCTCATCTCGTTCAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGTAAGCTCAACATTCCTTCTCTCTATTCTTCTGTTAATTTTTCAGTTCATCATTTCCACCTACTGTTGCAGTCTATGTTTCATAATTGAAATTGCAATTTTTGCTGCGAGTTCCTCTGTTCCGTGAATTGAACCAACTGTGTAGCTTGCACGAGAGACTGTGAATTGTTCGGATGTCTCTGTGATGTCCGTACGTTATGTTTGTAAAATATACTTGTTTTGATCTTACTACTGAAAGTATGGCTGGGTAAACGTGGATTTCTGTATTAATTTACTTCAGGAAACCAAGATCGTGGAAAACTCTAGAGAAACTTTTTATATTGATACTCATTCCAAAATTGATATCTGTTCTATATATTATAAAGGATAGACATCTTATGAATACGGATACTTAATATGATTTATCTTTAGCAATTATGCCCGAACTGATTTGCCACTTGCTGTAATTCACACAGCATTCATGATCATTTTAAAGCTATCGACCCAAGCTTTGGAGAAATTGGATATGAAGGGAGTTTTCATTGCTTCTAGACTTTTAGTGGCTTCTCATCTATAGTATTTTCCAGGAAATTCAAATATGTGTAGGCGCAGACCACCCATCTAGAATCAATTGTTTGTATTTCTTTGTATGATCCTTGCTTTTGTTATTTCATTTTTTTTTCCCCAAAGGAACCATGGTCCTTTTGCTTAGATCGTTCCATTTTTCAGTCCTGAAGATGGAAGAGAACACTGTTTCTTCGTCGAGCTTCAATTGTTAATTCCTCCTCAAATCTGTAAATTTGTTTCCATAATTTATTGAAAGCTTCAGCATTCACATGCTTGTGTCCTAGAATTTTCTCCATTCTTTTTTGAGTTTGCTACAATTTCTTCAATCTTCATAAACTATTACAGCTTCTCTTCTTCCATGAGCCTGAACTCTCTAAATCTATCTGCAATTGTATTGAAGACATACTTTGATTGCTATTACTCATTGTACTTGACCACCAAAACCAACCACGCAGCACCGTAAAGCGCTAGAAGTAGAAGCTTTCTTAAATTCTCATAAGAAGATAACCTAGTGTCCAAGAATGCATATGCAGCTTTTACAAATCTAGGACGTATAAGGTTCTTTAAGTTCAAAATAATCTGTTGTGGATATCATTTATGGGTGATCTACACCTAGAGAGACCAAGAATGTACATACAGCTTAAGCTTAACCTTGATCGTGGTAAACGGTTAGTGTGTTCTTGTTCTGCCGGACTGCCCACATCAACTTGTTTTGTAGTGGGATTTCTGGATTTTCAAGGAACTTACCCAATATTTATCCCCCTTTCATTGTTAACTTTTGATCTCAAGTTTCTTTCCCATTCGGGAAGATTCTCACATGTCACATGGTGTGAGATCCCACATCTGTTGGGGAGGAGAATGAAACATCTTTTGTAAGGGTGTGGACCTCCCTAGCAGATGCGTTTTAAAAACTTTGATGGGAAGTCCGAAAGAAAAGGTTCAAATAAGACAATATCTGCTAGCGGTAGGGTTAGGCTGTTACACATAGATTAATAGAATTGTTTCCTATTATTGTGAGAAGGAATAGAATCATTTGTCTATACCAATGCCCTTGAAATTTTTGCTATTGACTTTTTATCAGTCTACTTATTACAACTCCTTATTCCATATGGAAATCCTCTTTCTTGAATATTTTGCTATAGGACTTTCATTTTACACCTCGGACAAAGGACTGTCGGAAGCCTTTTCTCAATATGGTCAGGTTGTTGAAGGTGAATTCCATTCAAATACTTCAGCTTTCATGTCTAACCATGGCAATTTAGTTTCATGGAGCATAACACAACTTTCTCAATTCCAGCTAAAGTTGTGATGGACAGAGTATCTGATAAGTCAAAGGGATTCGGATTCGTCACCTTTGCATCTGAAGACGAAGCTCATACAGCTCTGACCGAGATGAACGGAAAGGTCTGCACTTTTCTCTATTTCATTACTTTTAATCTTAGAAATCTAAGTCTTATCGTTATTCGTTGCAGTCTTTGAACGGAAGGGTTATTTTCGTGGACTATGCAAAACCGACGTCCAATTTTCGTGGTGGAATTCCGATAGCGAGAGGACCTCCTGAGGAGAAAACTGATGAATGATTGCTCATAAAACTTCACGCTCGGTCGTTTATCAAAAGAAATTAGCTGAAAAGGGAATGAACAACCCATGTAGATGTGCATAAAAAGTGTGGTTCAGACATGTTTCAGCAATTTGCTTTATGCCAGAGACGTAAAAGGCTACAGGAAAAAAGGTCAGCTTGCAGGAATCTTTAAAATTCGATGAAATTAGACAAACAGATTGATTTTTTATAGTATTTTAAGTTTGCTTCTTATTTGTTAAGTATCTAATTAGCCGCAGTTAAACTGATATTCAGACATTTTTCCATGTATTTCTTAGTTTTCTGGTTGCCATATTGTGATAGTAATCTTTCTTTTCGCAGCAATTGTCCGTTAGTCTCATGGTTTTGTTTGAAATCTCATCGTGGTTTTCACTTCCAAATATCTAATATAGTCC

mRNA sequence

GCGGCAGAATTGGGCTTCGAATCTTTTATACGACCACTCGTCGCCGTCGCTTCTCCAGTCCAACCTCCGGCCGCCATTTTTTCATCTCTCTTTACTCGAAGACACAAGGGCATAGGTTCACTCTGGTACTACTACTATGGCGGCAATCAGAAAAGCGATGGCGATTTCCTCCAATCGTTGTGTTCTTCCCTCTGTATTTACTCCGCCGTCTCGTCTCATCTCGTTCAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGACTTTCATTTTACACCTCGGACAAAGGACTGTCGGAAGCCTTTTCTCAATATGGTCAGGTTGTTGAAGCTAAAGTTGTGATGGACAGAGTATCTGATAAGTCAAAGGGATTCGGATTCGTCACCTTTGCATCTGAAGACGAAGCTCATACAGCTCTGACCGAGATGAACGGAAAGTCTTTGAACGGAAGGGTTATTTTCGTGGACTATGCAAAACCGACGTCCAATTTTCGTGGTGGAATTCCGATAGCGAGAGGACCTCCTGAGGAGAAAACTGATGAATGATTGCTCATAAAACTTCACGCTCGGTCGTTTATCAAAAGAAATTAGCTGAAAAGGGAATGAACAACCCATGTAGATGTGCATAAAAAGTGTGGTTCAGACATGTTTCAGCAATTTGCTTTATGCCAGAGACGTAAAAGGCTACAGGAAAAAAGGTCAGCTTGCAGGAATCTTTAAAATTCGATGAAATTAGACAAACAGATTGATTTTTTATAGTATTTTAAGTTTGCTTCTTATTTGTTAAGTATCTAATTAGCCGCAGTTAAACTGATATTCAGACATTTTTCCATGTATTTCTTAGTTTTCTGGTTGCCATATTGTGATAGTAATCTTTCTTTTCGCAGCAATTGTCCGTTAGTCTCATGGTTTTGTTTGAAATCTCATCGTGGTTTTCACTTCCAAATATCTAATATAGTCC

Coding sequence (CDS)

ATGGCGGCAATCAGAAAAGCGATGGCGATTTCCTCCAATCGTTGTGTTCTTCCCTCTGTATTTACTCCGCCGTCTCGTCTCATCTCGTTCAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGACTTTCATTTTACACCTCGGACAAAGGACTGTCGGAAGCCTTTTCTCAATATGGTCAGGTTGTTGAAGCTAAAGTTGTGATGGACAGAGTATCTGATAAGTCAAAGGGATTCGGATTCGTCACCTTTGCATCTGAAGACGAAGCTCATACAGCTCTGACCGAGATGAACGGAAAGTCTTTGAACGGAAGGGTTATTTTCGTGGACTATGCAAAACCGACGTCCAATTTTCGTGGTGGAATTCCGATAGCGAGAGGACCTCCTGAGGAGAAAACTGATGAATGA

Protein sequence

MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGGIPIARGPPEEKTDE

Homology

[Close]

BLAST of CmaCh06G004940 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 9.1e-34
Identity = 72/101 (71.29%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 31  RGIASKLFVGGLSFYTSDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAH 90
           RG+ASKLF+GGLSF T+++GLSEAFS+ GQVVEA++VMDRVSD+SKGFGFVTFAS DEA 
Sbjct: 30  RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89

Query: 91  TALTEMNGKSLNGRVIFVDYAKPTSNF--RGGIPIARGPPE 130
            AL E NG+ LNGR IFVDYAK   +    GG PIARGPP+
Sbjct: 90  KALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130

[Close]

BLAST of CmaCh06G004940 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.7e-20
Identity = 57/122 (46.72%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 4   IRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQVVE 63
           +R+ ++ SSN  V        S L S R ++SKLFVGGLS+ T D  L +AF+ +G+V E
Sbjct: 11  LRQGVSQSSNGPV-------TSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTE 70

Query: 64  AKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYA-----KPTSNFR 121
           A V+ DR + +S+GFGFV+F+ ED A+ A+ EM+GK LNGR I V+ A      P S+F 
Sbjct: 71  ATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFG 125

[Close]

BLAST of CmaCh06G004940 vs. ExPASy Swiss-Prot
Match: Q28IQ9 (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.8e-19
Identity = 50/96 (52.08%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 36  KLFVGGLSFYTSDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTE 95
           KLFVGGL+F T+++ L + FS+YGQV E  VV DR S +S+GFGFVTF + ++A  A+  
Sbjct: 7   KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query: 96  MNGKSLNGRVIFVDYAKPTSN-----FRGGIPIARG 127
           MNGKS++GR I VD A  +SN     +RGG    RG
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSNDRRGGYRGGSSGGRG 102

[Close]

BLAST of CmaCh06G004940 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-18
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 36  KLFVGGLSFYTSDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTE 95
           KLF+ GLSFYTS+K L  AF  +G++VE K++MD++S +SKG+ F+ + +E+ A TAL E
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 96  MNGKSLNGRVIFVDYAKPTSNFR 119
           MNGK +NG +I VD AK T  FR
Sbjct: 343 MNGKIINGWMIVVDVAK-TKPFR 364

[Close]

BLAST of CmaCh06G004940 vs. ExPASy Swiss-Prot
Match: P60826 (Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-18
Identity = 49/96 (51.04%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 36  KLFVGGLSFYTSDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTE 95
           KLFVGGLSF T+++ L + FS+YGQ+ E  VV DR + +S+GFGFVTF + D+A  A+  
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 96  MNGKSLNGRVIFVDYAKPTSN-----FRGGIPIARG 127
           MNGKS++GR I VD A  +S+     +RGG    RG
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRG 102

[Close]

BLAST of CmaCh06G004940 vs. ExPASy TrEMBL
Match: A0A6J1KYF3 (small RNA-binding protein 11, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498283 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.7e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60
           MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ
Sbjct: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTDE
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of CmaCh06G004940 vs. ExPASy TrEMBL
Match: A0A6J1F5P0 (small RNA-binding protein 11, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441037 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 4.8e-62
Identity = 126/134 (94.03%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60
           MAAIRKAMA+SS+R VL S+F PPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ
Sbjct: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVV DRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPT+NFRGG
Sbjct: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTDE
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of CmaCh06G004940 vs. ExPASy TrEMBL
Match: A0A5A7TKK4 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004160 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.8e-56
Identity = 114/134 (85.07%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60
           M AIRKA+AISSNR VLPS+F PPSRL+SFRGIA+KLFVGGLS+YT+DKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120
           V+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGK LNGRVIFV+YAKPT++ RG 
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]

BLAST of CmaCh06G004940 vs. ExPASy TrEMBL
Match: A0A1S3B7I3 (glycine-rich RNA-binding protein 4, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486638 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.8e-56
Identity = 114/134 (85.07%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60
           M AIRKA+AISSNR VLPS+F PPSRL+SFRGIA+KLFVGGLS+YT+DKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120
           V+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGK LNGRVIFV+YAKPT++ RG 
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]

BLAST of CmaCh06G004940 vs. ExPASy TrEMBL
Match: A0A0A0LE31 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.0e-56
Identity = 113/134 (84.33%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60
           M AIRKAMAI+SNR VLPS+F PPSRL+S+RGIA+KLFVGGLS+YT+DKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAMAITSNRRVLPSLFPPPSRLVSYRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120
           V+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGK LNGRVIFV+YAKPT++ RG 
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSSRGA 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]

BLAST of CmaCh06G004940 vs. NCBI nr
Match: XP_023005174.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 265.0 bits (676), Expect = 3.5e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60
           MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ
Sbjct: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTDE
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of CmaCh06G004940 vs. NCBI nr
Match: XP_038903502.1 (small RNA-binding protein 11, chloroplastic [Benincasa hispida])

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-62
Identity = 126/134 (94.03%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60
           M AIRKAMAISSNRCVLPS+FT PSRL+SFRGIASKLFVGGLSFYT+DKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAMAISSNRCVLPSLFTLPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGK LNGRVIFVDYAKPTS FR G
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSKFRSG 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTDE
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of CmaCh06G004940 vs. NCBI nr
Match: XP_023538908.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.1 bits (632), Expect = 4.4e-62
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60
           MAAIRKAMAISS+R VL S+F PPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ
Sbjct: 1   MAAIRKAMAISSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVV DRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPT+NFRGG
Sbjct: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTDE
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of CmaCh06G004940 vs. NCBI nr
Match: XP_022933740.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 246.9 bits (629), Expect = 9.9e-62
Identity = 126/134 (94.03%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60
           MAAIRKAMA+SS+R VL S+F PPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ
Sbjct: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVV DRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPT+NFRGG
Sbjct: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTDE
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of CmaCh06G004940 vs. NCBI nr
Match: KAG7028125.1 (Small RNA-binding protein 11, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246.9 bits (629), Expect = 9.9e-62
Identity = 125/134 (93.28%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60
           MAAIRKAMA+SS+R VL S+F PPSRLISFRGIASKLFVGGLSFYTSDKGL+EAFSQYGQ
Sbjct: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120
           VVEAKVVMDRVSDKSKGFGFVTFAS+DEAHTALTEMNGKSLNGRVIFVDYAKPT+NFRGG
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTDE
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of CmaCh06G004940 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 144.4 bits (363), Expect = 6.4e-35
Identity = 72/101 (71.29%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 31  RGIASKLFVGGLSFYTSDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAH 90
           RG+ASKLF+GGLSF T+++GLSEAFS+ GQVVEA++VMDRVSD+SKGFGFVTFAS DEA 
Sbjct: 30  RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89

Query: 91  TALTEMNGKSLNGRVIFVDYAKPTSNF--RGGIPIARGPPE 130
            AL E NG+ LNGR IFVDYAK   +    GG PIARGPP+
Sbjct: 90  KALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130

[Close]

BLAST of CmaCh06G004940 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 98.6 bits (244), Expect = 4.0e-21
Identity = 57/122 (46.72%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 4   IRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQVVE 63
           +R+ ++ SSN  V        S L S R ++SKLFVGGLS+ T D  L +AF+ +G+V E
Sbjct: 11  LRQGVSQSSNGPV-------TSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTE 70

Query: 64  AKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYA-----KPTSNFR 121
           A V+ DR + +S+GFGFV+F+ ED A+ A+ EM+GK LNGR I V+ A      P S+F 
Sbjct: 71  ATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFG 125

[Close]

BLAST of CmaCh06G004940 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 98.6 bits (244), Expect = 4.0e-21
Identity = 57/122 (46.72%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 4   IRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQVVE 63
           +R+ ++ SSN  V        S L S R ++SKLFVGGLS+ T D  L +AF+ +G+V E
Sbjct: 11  LRQGVSQSSNGPV-------TSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTE 70

Query: 64  AKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYA-----KPTSNFR 121
           A V+ DR + +S+GFGFV+F+ ED A+ A+ EM+GK LNGR I V+ A      P S+F 
Sbjct: 71  ATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFG 125

[Close]

BLAST of CmaCh06G004940 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-19
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 36  KLFVGGLSFYTSDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTE 95
           KLF+ GLSFYTS+K L  AF  +G++VE K++MD++S +SKG+ F+ + +E+ A TAL E
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 96  MNGKSLNGRVIFVDYAKPTSNFR 119
           MNGK +NG +I VD AK T  FR
Sbjct: 343 MNGKIINGWMIVVDVAK-TKPFR 364

[Close]

BLAST of CmaCh06G004940 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-19
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 25  SRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFA 84
           S L S R +++KLF+GGLS+ T D  L +AF+ +G VV+AKV++DR + +S+GFGFV F 
Sbjct: 25  SMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84

Query: 85  SEDEAHTALTEMNGKSLNGRVIFVDYA--KPTSNFRGG 121
            E  A  A++EM+GK LNGR I V+ A  +P+  + GG
Sbjct: 85  DEGAATAAISEMDGKELNGRHIRVNPANDRPSGGYGGG 122

The following BLAST results are available for this feature:

BLAST of CmaCh06G004940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFZ6	9.1e-34	71.29	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9LIS2	5.7e-20	46.72	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q28IQ9	4.8e-19	52.08	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 S...	[more]
Q8L440	1.8e-18	54.22	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
P60826	2.4e-18	51.04	Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 ...	[more]

BLAST of CmaCh06G004940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KYF3	1.7e-67	100.00	small RNA-binding protein 11, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1F5P0	4.8e-62	94.03	small RNA-binding protein 11, chloroplastic-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A5A7TKK4	1.8e-56	85.07	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B7I3	1.8e-56	85.07	glycine-rich RNA-binding protein 4, mitochondrial isoform X1 OS=Cucumis melo OX=...	[more]
A0A0A0LE31	3.0e-56	84.33	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV...	[more]

BLAST of CmaCh06G004940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005174.1	3.5e-67	100.00	small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima]	[more]
XP_038903502.1	1.2e-62	94.03	small RNA-binding protein 11, chloroplastic [Benincasa hispida]	[more]
XP_023538908.1	4.4e-62	94.78	small RNA-binding protein 11, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022933740.1	9.9e-62	94.03	small RNA-binding protein 11, chloroplastic-like [Cucurbita moschata]	[more]
KAG7028125.1	9.9e-62	93.28	Small RNA-binding protein 11, chloroplastic [Cucurbita argyrosperma subsp. argyr...	[more]

BLAST of CmaCh06G004940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06210.1	6.4e-35	71.29	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	4.0e-21	46.72	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	4.0e-21	46.72	glycine-rich RNA-binding protein 4	[more]
AT3G20930.1	1.3e-19	54.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G13850.4	2.2e-19	48.98	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 36..109 e-value: 1.7E-27 score: 107.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 37..106 e-value: 1.2E-21 score: 76.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 35..113 score: 20.883369
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 32..131 e-value: 1.1E-29 score: 105.2
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..133
None	No IPR available	PANTHER	PTHR15241:SF335	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE	coord: 1..133
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 35..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G004940.1	CmaCh06G004940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901002	positive regulation of response to salt stress
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding