CmaCh06G004280 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G004280
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Peptidylprolyl isomerase
Location	Cma_Chr06: 1973556 .. 1974627 (-)
RNA-Seq Expression	CmaCh06G004280
Synteny	CmaCh06G004280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCCAGTTATTGGAAAGGGTTCTATGGTCGGTCCGCGACCTTGGATACCGAAGACGTCCTTGGAGTGATTTATAACGGCTAATGGGTTCCAGTTATTGGATAGGGTTCTATGGTCGGTCCGCGACCTTGGATACCGAAGACGTCCTTGGAGTGATTTATAACGGCTAATGGGTTCCAGTTATTGGATAGGGTTCTATGGTCGGTCCGCGACCTTGGATACCGAAGACGTCCTTGGAGTGATTTATAACGGCTAATGGGTTCCAGTTATTGGATAGGGTTCTATGGTCGGTCCGCGACCTTGGATACCGAAGACGCGGCTAATGGGTTCCAGTTATTGGATAGGGTTCTATGGTCGGTCCGCGACCTTGGATACCGAAGACGTCCTTAATGGGTTCCAGTTATTGGATAGGGTTCTATGGTCGGTCCGCGACCTTGGATACCGAAGACGTCCTTAGAGTGATCTCGTAGTTCCAATGGGGGTGGAGACGATGGGGTCGGTCCATAGATCTTCCTTCTTTTGGCCGCATTTCGATGAATCTTTCTACCCACCGCTATTAAATTATTGAACTCAATATTTTTTATAATTTAGAGAAATAAATCCATAAGATAAAAGAAAAACAAATTTTGGATTGTGGGTAATGTCAAATGTGGCAGAGTATGATCTGGGCCACCTGAAATTGTGGATAAGATTGTAGAGATATCTTCCTCTTTCTCTCAACAGAGAGCTTCGGAAGAACTTTTATGAACTAATATCCATGAATCCCATTTCATAACTCTCATTAATAGATACAATGGAGCTCTTCCTTCTTCCATCATACAAACAGAATCCCACCATTTTCTACAAACCCCTTACCCCTTTTCCCATTATCGGTCTCTTTTTCCCTCTCTTTCTCTGTTTCTTGTGTTTTCTTTTCATGGGTTTCTTTCAGAATGTGTTAATATCTTTGAATCTGCAGGGAAGAGACGGCCATCTCTTTTCCCTTGTCGATGCTCATTATCGTCCCCTCATGGCGGACCTTCAGAACAAGCCAAAGAATCGCTGCGGTGTGAGGGAAGAAGGGCATTGA

mRNA sequence

ATGGGTTCCAGTTATTGGAAAGGGTTCTATGGGTTCTATGGTCGGTCCGCGACCTTGGATACCGAAGACGTCCTTGGAGGTTCTATGGTCGGTCCGCGACCTTGGATACCGAAGACGCGGCTAATGGGTTCCAGTTATTGGATAGGGTTCTATGGTCGGTCCGCGACCTTGGATACCGAAGACGTCCTTAATGGGTTCCAGTTATTGGATAGGGTTCTATGATACAATGGAGCTCTTCCTTCTTCCATCATACAAACAGAATCCCACCATTTTCTACAAACCCCTTACCCCTTTTCCCATTATCGGTCTCTTTTTCCCTCTCTTTCTCTGTTTCTTGTGTTTTCTTTTCATGGGTTTCTTTCAGAATGTGTTAATATCTTTGAATCTGCAGGGAAGAGACGGCCATCTCTTTTCCCTTGTCGATGCTCATTATCGTCCCCTCATGGCGGACCTTCAGAACAAGCCAAAGAATCGCTGCGGTGTGAGGGAAGAAGGGCATTGA

Coding sequence (CDS)

ATGGTCGGTCCGCGACCTTGGATACCGAAGACGTCCTTAATGGGTTCCAGTTATTGGATAGGGTTCTATGATACAATGGAGCTCTTCCTTCTTCCATCATACAAACAGAATCCCACCATTTTCTACAAACCCCTTACCCCTTTTCCCATTATCGGTCTCTTTTTCCCTCTCTTTCTCTGTTTCTTGTGTTTTCTTTTCATGGGTTTCTTTCAGAATGTGTTAATATCTTTGAATCTGCAGGGAAGAGACGGCCATCTCTTTTCCCTTGTCGATGCTCATTATCGTCCCCTCATGGCGGACCTTCAGAACAAGCCAAAGAATCGCTGCGGTGTGAGGGAAGAAGGGCATTGA

Protein sequence

MVGPRPWIPKTSLMGSSYWIGFYDTMELFLLPSYKQNPTIFYKPLTPFPIIGLFFPLFLCFLCFLFMGFFQNVLISLNLQGRDGHLFSLVDAHYRPLMADLQNKPKNRCGVREEGH

Homology

[Close]

BLAST of CmaCh06G004280 vs. ExPASy TrEMBL
Match: A0A6J1L3J7 (Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111498801 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 31/36 (86.11%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 26 MELFLLPSYKQNPTIFYKPLTPFPIIGLFFP-LFLC 61
          MELFLLPSYKQNPTIFYKPLTPFPIIG   P LF C
Sbjct: 1  MELFLLPSYKQNPTIFYKPLTPFPIIGKRRPSLFPC 36

[Close]

BLAST of CmaCh06G004280 vs. ExPASy TrEMBL
Match: A0A6J1G514 (Peptidylprolyl isomerase OS=Cucurbita moschata OX=3662 GN=LOC111450798 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 31/36 (86.11%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 26 MELFLLPSYKQNPTIFYKPLTPFPIIGLFFP-LFLC 61
          MELFLLPSYKQNPTIFYKPLTPFPIIG   P LF C
Sbjct: 1  MELFLLPSYKQNPTIFYKPLTPFPIIGKRRPSLFPC 36

[Close]

BLAST of CmaCh06G004280 vs. NCBI nr
Match: XP_022946868.1 (peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-05
Identity = 31/36 (86.11%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 26 MELFLLPSYKQNPTIFYKPLTPFPIIGLFFP-LFLC 61
          MELFLLPSYKQNPTIFYKPLTPFPIIG   P LF C
Sbjct: 1  MELFLLPSYKQNPTIFYKPLTPFPIIGKRRPSLFPC 36

[Close]

BLAST of CmaCh06G004280 vs. NCBI nr
Match: XP_023540090.1 (peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-05
Identity = 31/36 (86.11%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 26 MELFLLPSYKQNPTIFYKPLTPFPIIGLFFP-LFLC 61
          MELFLLPSYKQNPTIFYKPLTPFPIIG   P LF C
Sbjct: 1  MELFLLPSYKQNPTIFYKPLTPFPIIGKRRPSLFPC 36

[Close]

BLAST of CmaCh06G004280 vs. NCBI nr
Match: XP_023005943.1 (peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-05
Identity = 31/36 (86.11%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 26 MELFLLPSYKQNPTIFYKPLTPFPIIGLFFP-LFLC 61
          MELFLLPSYKQNPTIFYKPLTPFPIIG   P LF C
Sbjct: 1  MELFLLPSYKQNPTIFYKPLTPFPIIGKRRPSLFPC 36

[Close]

BLAST of CmaCh06G004280 vs. NCBI nr
Match: KAG6596524.1 (Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-05
Identity = 31/36 (86.11%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 26 MELFLLPSYKQNPTIFYKPLTPFPIIGLFFP-LFLC 61
          MELFLLPSYKQNPTIFYKPLTPFPIIG   P LF C
Sbjct: 1  MELFLLPSYKQNPTIFYKPLTPFPIIGKRRPSLFPC 36

The following BLAST results are available for this feature:

BLAST of CmaCh06G004280 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G004280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L3J7	2.1e-05	86.11	Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111498801 PE=4 SV=1	[more]
A0A6J1G514	2.1e-05	86.11	Peptidylprolyl isomerase OS=Cucurbita moschata OX=3662 GN=LOC111450798 PE=4 SV=1	[more]

BLAST of CmaCh06G004280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946868.1	4.3e-05	86.11	peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic-like [Cucurbita mosc...	[more]
XP_023540090.1	4.3e-05	86.11	peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic-like [Cucurbita pepo...	[more]
XP_023005943.1	4.3e-05	86.11	peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic-like [Cucurbita maxi...	[more]
KAG6596524.1	4.3e-05	86.11	Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic, partial [Cucurbita ...	[more]

BLAST of CmaCh06G004280 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G004280.1	CmaCh06G004280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity