CmaCh06G003910 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G003910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Transcription initiation factor TFIID subunit 8
Location	Cma_Chr06: 1807702 .. 1808715 (-)
RNA-Seq Expression	CmaCh06G003910
Synteny	CmaCh06G003910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGATGGGGCTAGGAATAACATGAAGTCGAAAGAACAACAAAGCTCTGATTCGAGAAAATGCAGAGGCAATGAGTTTGGACGAGAGGTGTCGAGAATTGCTGTGGCTCAGATATGTAATAGTGCAGGGTTTCAGAGATTCAAGGGGTCAGCTCTAGACGCATTGGTCGACATCGCCATCAAGTACCTTCGCCATTTGGGTAAGATAGCAGCATTCTATGCTAATTTGGCTGGTAGAATTGAGTGCAATGTTTTTGATATAATTAGAGCGCTTGAAGAGTTGGAATCATCACAGGGGTTTCAGGAGGCTTGGGAACCAATTCAATGTCTTGCTAATTCAGGGTCAGTGAAGAACATTGTTCGGTACGTGAATTCAGTTGAAGAGATCCCTTTTGCTCACCCATTACCATGTTTCCCTGTGATCAGAAACAGGAAGGCAATTCCAAGTTTTCTTCAGATTGGTGAATCCCCACCTGGCAAACACATTGCCAATTGGTTACCAGCTTTCCCTGATGCTCGTACTTACGACCCTTCAACTTTGTGGAGGAGGAGCCCGAGTGAGCTGTGTGCCGAGAAGATGGAGGTGTCGAGGCAGGGAAGGAAGGCAGAGAAATCCGTGTCGGGTTTGCAGAAGAGATTGGTTTCCTGTGGTTCAGCAAGAAATGGTAATGGGGAGATTGAGTTATCAGGAGGTGAGAGTAATCCATTCCTTGGGACACGTTTGCAAGAGATGGAAGATGGGACTGCCATGGATGGGATAAGCCGTTTGTCTGTGCCAGAGGTGGTTGCTCCTGCCATTGAAGCGACTAATGGCAGGCCTCCTGTTCGTTTCAAGTTAGAAACTAGCAAAACCTTTCTTAGAGGATCTAGGAATTTGAATGCTAAAATGGCAGGGAACAGGGAATCAGTGTTCTGGATAAGACGAGATGATGAAAGAGATGAAAAGAAGAGGAGAGTTGAATACATTCCCAGACATTCTGAAAACTCTCATGAGGAGCTCAACCAGTCATGA

mRNA sequence

ATGAGCGATGGGGCTAGGAATAACATGAAGTCGAAAGAACAACAAAGCTCTGATTCGAGAAAATGCAGAGGCAATGAGTTTGGACGAGAGGTGTCGAGAATTGCTGTGGCTCAGATATGTAATAGTGCAGGGTTTCAGAGATTCAAGGGGTCAGCTCTAGACGCATTGGTCGACATCGCCATCAAGTACCTTCGCCATTTGGGTAAGATAGCAGCATTCTATGCTAATTTGGCTGGTAGAATTGAGTGCAATGTTTTTGATATAATTAGAGCGCTTGAAGAGTTGGAATCATCACAGGGGTTTCAGGAGGCTTGGGAACCAATTCAATGTCTTGCTAATTCAGGGTCAGTGAAGAACATTGTTCGGTACGTGAATTCAGTTGAAGAGATCCCTTTTGCTCACCCATTACCATGTTTCCCTGTGATCAGAAACAGGAAGGCAATTCCAAGTTTTCTTCAGATTGGTGAATCCCCACCTGGCAAACACATTGCCAATTGGTTACCAGCTTTCCCTGATGCTCGTACTTACGACCCTTCAACTTTGTGGAGGAGGAGCCCGAGTGAGCTGTGTGCCGAGAAGATGGAGGTGTCGAGGCAGGGAAGGAAGGCAGAGAAATCCGTGTCGGGTTTGCAGAAGAGATTGGTTTCCTGTGGTTCAGCAAGAAATGGTAATGGGGAGATTGAGTTATCAGGAGGTGAGAGTAATCCATTCCTTGGGACACGTTTGCAAGAGATGGAAGATGGGACTGCCATGGATGGGATAAGCCGTTTGTCTGTGCCAGAGGTGGTTGCTCCTGCCATTGAAGCGACTAATGGCAGGCCTCCTGTTCGTTTCAAGTTAGAAACTAGCAAAACCTTTCTTAGAGGATCTAGGAATTTGAATGCTAAAATGGCAGGGAACAGGGAATCAGTGTTCTGGATAAGACGAGATGATGAAAGAGATGAAAAGAAGAGGAGAGTTGAATACATTCCCAGACATTCTGAAAACTCTCATGAGGAGCTCAACCAGTCATGA

Coding sequence (CDS)

ATGAGCGATGGGGCTAGGAATAACATGAAGTCGAAAGAACAACAAAGCTCTGATTCGAGAAAATGCAGAGGCAATGAGTTTGGACGAGAGGTGTCGAGAATTGCTGTGGCTCAGATATGTAATAGTGCAGGGTTTCAGAGATTCAAGGGGTCAGCTCTAGACGCATTGGTCGACATCGCCATCAAGTACCTTCGCCATTTGGGTAAGATAGCAGCATTCTATGCTAATTTGGCTGGTAGAATTGAGTGCAATGTTTTTGATATAATTAGAGCGCTTGAAGAGTTGGAATCATCACAGGGGTTTCAGGAGGCTTGGGAACCAATTCAATGTCTTGCTAATTCAGGGTCAGTGAAGAACATTGTTCGGTACGTGAATTCAGTTGAAGAGATCCCTTTTGCTCACCCATTACCATGTTTCCCTGTGATCAGAAACAGGAAGGCAATTCCAAGTTTTCTTCAGATTGGTGAATCCCCACCTGGCAAACACATTGCCAATTGGTTACCAGCTTTCCCTGATGCTCGTACTTACGACCCTTCAACTTTGTGGAGGAGGAGCCCGAGTGAGCTGTGTGCCGAGAAGATGGAGGTGTCGAGGCAGGGAAGGAAGGCAGAGAAATCCGTGTCGGGTTTGCAGAAGAGATTGGTTTCCTGTGGTTCAGCAAGAAATGGTAATGGGGAGATTGAGTTATCAGGAGGTGAGAGTAATCCATTCCTTGGGACACGTTTGCAAGAGATGGAAGATGGGACTGCCATGGATGGGATAAGCCGTTTGTCTGTGCCAGAGGTGGTTGCTCCTGCCATTGAAGCGACTAATGGCAGGCCTCCTGTTCGTTTCAAGTTAGAAACTAGCAAAACCTTTCTTAGAGGATCTAGGAATTTGAATGCTAAAATGGCAGGGAACAGGGAATCAGTGTTCTGGATAAGACGAGATGATGAAAGAGATGAAAAGAAGAGGAGAGTTGAATACATTCCCAGACATTCTGAAAACTCTCATGAGGAGCTCAACCAGTCATGA

Protein sequence

MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIAIKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSGSVKNIVRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPSTLWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGTRLQEMEDGTAMDGISRLSVPEVVAPAIEATNGRPPVRFKLETSKTFLRGSRNLNAKMAGNRESVFWIRRDDERDEKKRRVEYIPRHSENSHEELNQS

Homology

[Close]

BLAST of CmaCh06G003910 vs. ExPASy Swiss-Prot
Match: Q9SYZ9 (Transcription initiation factor TFIID subunit 8 OS=Arabidopsis thaliana OX=3702 GN=TAF8 PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.4e-54
Identity = 137/358 (38.27%), Postives = 201/358 (56.15%), Query Frame = 0


Query: 7   NNMKSKEQQSSDSRKCRG----NEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIAIK 66
           N  +++E   +D+    G     EF    ++ AVAQ+C S G++ FK  AL++L   A++
Sbjct: 2   NTERAQEGDRNDAASSSGCSESYEFSHAAAKAAVAQVCESVGYENFKDPALESLSGFALQ 61

Query: 67  YLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSGSVKNIVR 126
           Y+  LGK A  +ANL GR +CNVFDII AL++L  + G Q        L  S  ++ I+ 
Sbjct: 62  YILQLGKTATSFANLTGRSQCNVFDIILALDDLTDNNGEQGISSESCSLGRSIKLREIID 121

Query: 127 YVNSVEEIPFAHPLPCFPVI---RNRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPS 186
           +VNS EE+PF+ PLP FPV    R+RK IPSF++IGE+PPGKHI  WLPAFPD  TY  +
Sbjct: 122 FVNSSEEVPFSQPLPSFPVAISDRSRKMIPSFVEIGETPPGKHIPLWLPAFPDPHTYKET 181

Query: 187 TLWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARN------GNGEIELSGGE 246
            +W    S+   +K+E +RQ RKAE+++  LQ++LV   S+RN         + E+   E
Sbjct: 182 PMWIERVSDPRGDKIEQARQRRKAERALLSLQRKLVCKISSRNPVWGDMDGVKEEMRDDE 241

Query: 247 SNPFLGTRLQEMEDGTAMDGISR--LSVPEVVAPAIEAT-------------NGRPPVRF 306
           S       L+ +  G  ++ ++R  LSV E  APA+EA                +P    
Sbjct: 242 S------ELRSVSSGEKVESLNRDGLSVIEAFAPAMEAARDGFSSEAHTEWKKNKPVALS 301

Query: 307 KLETSKTFLRGSRNLNAKMAGNRESVFWIRRDDERDEKKRRVEYIPRHSENSHEELNQ 337
           KL T K FL    +L+ +M G    + ++R +D RD+K+RR E+I R    +  +LNQ
Sbjct: 302 KLRTEKKFLGQPLDLSLQMKGEDRPISFVREED-RDDKRRRAEFILRQCMENPVDLNQ 352

[Close]

BLAST of CmaCh06G003910 vs. ExPASy Swiss-Prot
Match: Q5F489 (Transcription initiation factor TFIID subunit 3 OS=Gallus gallus OX=9031 GN=TAF3 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-07
Identity = 33/118 (27.97%), Postives = 59/118 (50.00%), Query Frame = 0


Query: 27  FGREVSRIAVAQICNSAGFQRFKGSALDALVDIAIKYLRHLGKIAAFYANLAGRIECNVF 86
           + R + R++VAQIC + G+   + SA D L D+  +YL+ LG+    Y  L GR +  + 
Sbjct: 5   YSRWLLRVSVAQICQALGWDSVQVSACDLLTDVLQRYLQGLGRGCHRYCELYGRTDPILD 64

Query: 87  DIIRALEELESSQGFQEAWEPIQCLANSGSVKNIVRYVNSVEEIPFAHPLPCFPVIRN 145
           D+  A + +                    ++  +  Y++++E + FAH +P FPV +N
Sbjct: 65  DVGDAFKLM------------------GVNLHELEDYIHNIEPVTFAHQIPSFPVSKN 104

[Close]

BLAST of CmaCh06G003910 vs. ExPASy Swiss-Prot
Match: Q5VWG9 (Transcription initiation factor TFIID subunit 3 OS=Homo sapiens OX=9606 GN=TAF3 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.7e-07
Identity = 32/118 (27.12%), Postives = 58/118 (49.15%), Query Frame = 0


Query: 27  FGREVSRIAVAQICNSAGFQRFKGSALDALVDIAIKYLRHLGKIAAFYANLAGRIECNVF 86
           + R + R++VAQIC + G+   + SA   L D+  +YL+ LG+    Y+ L GR +  + 
Sbjct: 5   YSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPILD 64

Query: 87  DIIRALEELESSQGFQEAWEPIQCLANSGSVKNIVRYVNSVEEIPFAHPLPCFPVIRN 145
           D+  A + +                    S+  +  Y++++E + F H +P FPV +N
Sbjct: 65  DVGEAFQLM------------------GVSLHELEDYIHNIEPVTFPHQIPSFPVSKN 104

[Close]

BLAST of CmaCh06G003910 vs. ExPASy Swiss-Prot
Match: Q5HZG4 (Transcription initiation factor TFIID subunit 3 OS=Mus musculus OX=10090 GN=Taf3 PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 8.2e-07
Identity = 31/118 (26.27%), Postives = 58/118 (49.15%), Query Frame = 0


Query: 27  FGREVSRIAVAQICNSAGFQRFKGSALDALVDIAIKYLRHLGKIAAFYANLAGRIECNVF 86
           + R + R++VAQIC + G+   + SA   L D+  +YL+ LG+    Y+ L GR +  + 
Sbjct: 5   YSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPILD 64

Query: 87  DIIRALEELESSQGFQEAWEPIQCLANSGSVKNIVRYVNSVEEIPFAHPLPCFPVIRN 145
           D+  A + +                    ++  +  Y++++E + F H +P FPV +N
Sbjct: 65  DVGEAFQLM------------------GVNLHELEDYIHNIEPVTFPHQIPSFPVSKN 104

[Close]

BLAST of CmaCh06G003910 vs. ExPASy Swiss-Prot
Match: Q9P6P0 (Transcription initiation factor TFIID subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=taf3 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 8.4e-04
Identity = 29/97 (29.90%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 33  RIAVAQICNSAGFQRFKGSALDALVDIAIKYLRHLGKIAAFYANLAGRIECNVFDIIRAL 92
           RI  +Q   +AG  R K S L++  DI I+Y+R L + A   A +  R  C++ D+  A+
Sbjct: 15  RIFCSQTLRAAGIDRTKVSLLNSFTDITIRYIRLLSETAMAKAEVGRRSCCDLGDLRLAM 74

Query: 93  EELESSQGFQEAWEPIQCLANSGSVKNIVRYVNSVEE 130
           EE+    G +E  + +    N   V  + R    V++
Sbjct: 75  EEIGLLNGSEEDVKTLVEWFNGPQVAELRRVSGFVQD 111

[Close]

BLAST of CmaCh06G003910 vs. ExPASy TrEMBL
Match: A0A6J1KY58 (Transcription initiation factor TFIID subunit 8 OS=Cucurbita maxima OX=3661 GN=LOC111498627 PE=3 SV=1)

HSP 1 Score: 666.4 bits (1718), Expect = 6.4e-188
Identity = 337/337 (100.00%), Postives = 337/337 (100.00%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIA 60
           MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIA
Sbjct: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIA 60

Query: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSGSVKNI 120
           IKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSGSVKNI
Sbjct: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSGSVKNI 120

Query: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPST 180
           VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPST
Sbjct: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPST 180

Query: 181 LWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240
           LWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT
Sbjct: 181 LWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240

Query: 241 RLQEMEDGTAMDGISRLSVPEVVAPAIEATNGRPPVRFKLETSKTFLRGSRNLNAKMAGN 300
           RLQEMEDGTAMDGISRLSVPEVVAPAIEATNGRPPVRFKLETSKTFLRGSRNLNAKMAGN
Sbjct: 241 RLQEMEDGTAMDGISRLSVPEVVAPAIEATNGRPPVRFKLETSKTFLRGSRNLNAKMAGN 300

Query: 301 RESVFWIRRDDERDEKKRRVEYIPRHSENSHEELNQS 338
           RESVFWIRRDDERDEKKRRVEYIPRHSENSHEELNQS
Sbjct: 301 RESVFWIRRDDERDEKKRRVEYIPRHSENSHEELNQS 337

[Close]

BLAST of CmaCh06G003910 vs. ExPASy TrEMBL
Match: A0A6J1GQQ1 (Transcription initiation factor TFIID subunit 8 OS=Cucurbita moschata OX=3662 GN=LOC111455334 PE=3 SV=1)

HSP 1 Score: 622.9 bits (1605), Expect = 8.1e-175
Identity = 318/338 (94.08%), Postives = 325/338 (96.15%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIA 60
           MSDGARN MKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFK SALDALVDIA
Sbjct: 1   MSDGARNIMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA 60

Query: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSGSVKNI 120
           IKYLRHLGKIAAFYANLAGRIECNVFDIIR LEELESSQGFQEAWEPIQCLA SGSVKNI
Sbjct: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLAKSGSVKNI 120

Query: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPST 180
           VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGE+PPG HIA+WLPAFPDA TYDPST
Sbjct: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGETPPGTHIADWLPAFPDAHTYDPST 180

Query: 181 LWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240
           LWRRSPSE CAEKME++RQ RKAEKS+SGLQKRLVSCGSARNGNGEIELSGGESNPFLGT
Sbjct: 181 LWRRSPSEPCAEKMEMARQRRKAEKSMSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240

Query: 241 RLQEMEDGTAMDGISRLSVPEVVAPAIEATNGRPPVRFKLETSKTFLRGSRNLNAKMAGN 300
            LQEMEDG+AMDGIS LSVPEVVAPAIEA NGRPPVRFKLETSKTFLRGSRNLNAKMAGN
Sbjct: 241 CLQEMEDGSAMDGISHLSVPEVVAPAIEAINGRPPVRFKLETSKTFLRGSRNLNAKMAGN 300

Query: 301 RESVFWIRRDDERDEKKRRVEYIPRHS-ENSHEELNQS 338
           RESVFW+RRDDERDEKKRRVEYIPRHS ENSHEELN S
Sbjct: 301 RESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS 338

[Close]

BLAST of CmaCh06G003910 vs. ExPASy TrEMBL
Match: A0A6J1GMG0 (Transcription initiation factor TFIID subunit 8 OS=Cucurbita moschata OX=3662 GN=LOC111455334 PE=3 SV=1)

HSP 1 Score: 612.1 bits (1577), Expect = 1.4e-171
Identity = 318/355 (89.58%), Postives = 325/355 (91.55%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIA 60
           MSDGARN MKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFK SALDALVDIA
Sbjct: 1   MSDGARNIMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA 60

Query: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSGSVKNI 120
           IKYLRHLGKIAAFYANLAGRIECNVFDIIR LEELESSQGFQEAWEPIQCLA SGSVKNI
Sbjct: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLAKSGSVKNI 120

Query: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPST 180
           VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGE+PPG HIA+WLPAFPDA TYDPST
Sbjct: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGETPPGTHIADWLPAFPDAHTYDPST 180

Query: 181 LWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240
           LWRRSPSE CAEKME++RQ RKAEKS+SGLQKRLVSCGSARNGNGEIELSGGESNPFLGT
Sbjct: 181 LWRRSPSEPCAEKMEMARQRRKAEKSMSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240

Query: 241 RLQEMEDGTAMDGISRLSVPEVVAPAIEATNG-----------------RPPVRFKLETS 300
            LQEMEDG+AMDGIS LSVPEVVAPAIEA NG                 RPPVRFKLETS
Sbjct: 241 CLQEMEDGSAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLETS 300

Query: 301 KTFLRGSRNLNAKMAGNRESVFWIRRDDERDEKKRRVEYIPRHS-ENSHEELNQS 338
           KTFLRGSRNLNAKMAGNRESVFW+RRDDERDEKKRRVEYIPRHS ENSHEELN S
Sbjct: 301 KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS 355

[Close]

BLAST of CmaCh06G003910 vs. ExPASy TrEMBL
Match: A0A6J1KVR9 (Transcription initiation factor TFIID subunit 8 OS=Cucurbita maxima OX=3661 GN=LOC111498627 PE=3 SV=1)

HSP 1 Score: 592.8 bits (1527), Expect = 8.9e-166
Identity = 309/337 (91.69%), Postives = 309/337 (91.69%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIA 60
           MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIA
Sbjct: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIA 60

Query: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSGSVKNI 120
           IKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSG     
Sbjct: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSG----- 120

Query: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPST 180
                                  NRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPST
Sbjct: 121 -----------------------NRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPST 180

Query: 181 LWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240
           LWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT
Sbjct: 181 LWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240

Query: 241 RLQEMEDGTAMDGISRLSVPEVVAPAIEATNGRPPVRFKLETSKTFLRGSRNLNAKMAGN 300
           RLQEMEDGTAMDGISRLSVPEVVAPAIEATNGRPPVRFKLETSKTFLRGSRNLNAKMAGN
Sbjct: 241 RLQEMEDGTAMDGISRLSVPEVVAPAIEATNGRPPVRFKLETSKTFLRGSRNLNAKMAGN 300

Query: 301 RESVFWIRRDDERDEKKRRVEYIPRHSENSHEELNQS 338
           RESVFWIRRDDERDEKKRRVEYIPRHSENSHEELNQS
Sbjct: 301 RESVFWIRRDDERDEKKRRVEYIPRHSENSHEELNQS 309

[Close]

BLAST of CmaCh06G003910 vs. ExPASy TrEMBL
Match: A0A6J1GRA3 (Transcription initiation factor TFIID subunit 8 OS=Cucurbita moschata OX=3662 GN=LOC111455334 PE=3 SV=1)

HSP 1 Score: 538.5 bits (1386), Expect = 2.0e-149
Identity = 290/355 (81.69%), Postives = 297/355 (83.66%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIA 60
           MSDGARN MKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFK SALDALVDIA
Sbjct: 1   MSDGARNIMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA 60

Query: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSGSVKNI 120
           IKYLRHLGKIAAFYANLAGRIECNVFDIIR LEELESSQGFQEAWEPIQCLA SG     
Sbjct: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLAKSG----- 120

Query: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPST 180
                                  NRKAIPSFLQIGE+PPG HIA+WLPAFPDA TYDPST
Sbjct: 121 -----------------------NRKAIPSFLQIGETPPGTHIADWLPAFPDAHTYDPST 180

Query: 181 LWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240
           LWRRSPSE CAEKME++RQ RKAEKS+SGLQKRLVSCGSARNGNGEIELSGGESNPFLGT
Sbjct: 181 LWRRSPSEPCAEKMEMARQRRKAEKSMSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240

Query: 241 RLQEMEDGTAMDGISRLSVPEVVAPAIEATNG-----------------RPPVRFKLETS 300
            LQEMEDG+AMDGIS LSVPEVVAPAIEA NG                 RPPVRFKLETS
Sbjct: 241 CLQEMEDGSAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLETS 300

Query: 301 KTFLRGSRNLNAKMAGNRESVFWIRRDDERDEKKRRVEYIPRHS-ENSHEELNQS 338
           KTFLRGSRNLNAKMAGNRESVFW+RRDDERDEKKRRVEYIPRHS ENSHEELN S
Sbjct: 301 KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS 327

[Close]

BLAST of CmaCh06G003910 vs. NCBI nr
Match: XP_023005710.1 (transcription initiation factor TFIID subunit 8-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 666.4 bits (1718), Expect = 1.3e-187
Identity = 337/337 (100.00%), Postives = 337/337 (100.00%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIA 60
           MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIA
Sbjct: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIA 60

Query: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSGSVKNI 120
           IKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSGSVKNI
Sbjct: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSGSVKNI 120

Query: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPST 180
           VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPST
Sbjct: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPST 180

Query: 181 LWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240
           LWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT
Sbjct: 181 LWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240

Query: 241 RLQEMEDGTAMDGISRLSVPEVVAPAIEATNGRPPVRFKLETSKTFLRGSRNLNAKMAGN 300
           RLQEMEDGTAMDGISRLSVPEVVAPAIEATNGRPPVRFKLETSKTFLRGSRNLNAKMAGN
Sbjct: 241 RLQEMEDGTAMDGISRLSVPEVVAPAIEATNGRPPVRFKLETSKTFLRGSRNLNAKMAGN 300

Query: 301 RESVFWIRRDDERDEKKRRVEYIPRHSENSHEELNQS 338
           RESVFWIRRDDERDEKKRRVEYIPRHSENSHEELNQS
Sbjct: 301 RESVFWIRRDDERDEKKRRVEYIPRHSENSHEELNQS 337

[Close]

BLAST of CmaCh06G003910 vs. NCBI nr
Match: XP_022953779.1 (transcription initiation factor TFIID subunit 8-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 622.9 bits (1605), Expect = 1.7e-174
Identity = 318/338 (94.08%), Postives = 325/338 (96.15%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIA 60
           MSDGARN MKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFK SALDALVDIA
Sbjct: 1   MSDGARNIMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA 60

Query: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSGSVKNI 120
           IKYLRHLGKIAAFYANLAGRIECNVFDIIR LEELESSQGFQEAWEPIQCLA SGSVKNI
Sbjct: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLAKSGSVKNI 120

Query: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPST 180
           VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGE+PPG HIA+WLPAFPDA TYDPST
Sbjct: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGETPPGTHIADWLPAFPDAHTYDPST 180

Query: 181 LWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240
           LWRRSPSE CAEKME++RQ RKAEKS+SGLQKRLVSCGSARNGNGEIELSGGESNPFLGT
Sbjct: 181 LWRRSPSEPCAEKMEMARQRRKAEKSMSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240

Query: 241 RLQEMEDGTAMDGISRLSVPEVVAPAIEATNGRPPVRFKLETSKTFLRGSRNLNAKMAGN 300
            LQEMEDG+AMDGIS LSVPEVVAPAIEA NGRPPVRFKLETSKTFLRGSRNLNAKMAGN
Sbjct: 241 CLQEMEDGSAMDGISHLSVPEVVAPAIEAINGRPPVRFKLETSKTFLRGSRNLNAKMAGN 300

Query: 301 RESVFWIRRDDERDEKKRRVEYIPRHS-ENSHEELNQS 338
           RESVFW+RRDDERDEKKRRVEYIPRHS ENSHEELN S
Sbjct: 301 RESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS 338

[Close]

BLAST of CmaCh06G003910 vs. NCBI nr
Match: XP_023540161.1 (transcription initiation factor TFIID subunit 8-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 621.3 bits (1601), Expect = 4.8e-174
Identity = 322/355 (90.70%), Postives = 327/355 (92.11%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIA 60
           MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGF RFK SALDALVDIA
Sbjct: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFHRFKESALDALVDIA 60

Query: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSGSVKNI 120
           IKYLRHLGKIAA YANLAGRIECNVFDIIR LEELESSQGFQEAWEPIQCLANSGSVKNI
Sbjct: 61  IKYLRHLGKIAALYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSGSVKNI 120

Query: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPST 180
           VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGE+PPGKHIA+WLPAFPDA TYDPST
Sbjct: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGETPPGKHIADWLPAFPDAHTYDPST 180

Query: 181 LWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240
           LWRRSPSE CAEKME++RQ RKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT
Sbjct: 181 LWRRSPSEPCAEKMEMARQRRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240

Query: 241 RLQEMEDGTAMDGISRLSVPEVVAPAIEATNG-----------------RPPVRFKLETS 300
            LQEMEDGTAMDGIS LSVPEVVAPAIEA NG                 RPPVRFKLETS
Sbjct: 241 CLQEMEDGTAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLETS 300

Query: 301 KTFLRGSRNLNAKMAGNRESVFWIRRDDERDEKKRRVEYIPRHS-ENSHEELNQS 338
           KTFLRGSRNLNAKMAGNRESVFW+RRDDERDEKKRRVEYIPRHS ENSHEELNQS
Sbjct: 301 KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSQENSHEELNQS 355

[Close]

BLAST of CmaCh06G003910 vs. NCBI nr
Match: KAG6596483.1 (Transcription initiation factor TFIID subunit 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 617.1 bits (1590), Expect = 9.1e-173
Identity = 320/355 (90.14%), Postives = 327/355 (92.11%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIA 60
           MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFK SALDALVDIA
Sbjct: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA 60

Query: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSGSVKNI 120
           IKYLRHLGKIAAFYANLAGRIECNVFDIIR LEELESSQGFQEAWEPIQCLANSGSVKNI
Sbjct: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSGSVKNI 120

Query: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPST 180
           VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQI E+PPG HIA+WLPAFPDA TYDPST
Sbjct: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIVETPPGTHIADWLPAFPDAHTYDPST 180

Query: 181 LWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240
           LWRRSPSELCAEKME++RQ RKAEKS+SGLQKRLVSCGSARNGNGEIELSGGESNPFLGT
Sbjct: 181 LWRRSPSELCAEKMEMARQRRKAEKSMSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240

Query: 241 RLQEMEDGTAMDGISRLSVPEVVAPAIEATNG-----------------RPPVRFKLETS 300
            LQEMEDG+AMDGIS LSVPEVVAPAIEA NG                 RPPVRFKLETS
Sbjct: 241 CLQEMEDGSAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLETS 300

Query: 301 KTFLRGSRNLNAKMAGNRESVFWIRRDDERDEKKRRVEYIPRHS-ENSHEELNQS 338
           KTFLRGSRNLNAKMAGNRESVFW+RRDDERDEKKRRVEYIPRHS ENSHEELN S
Sbjct: 301 KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS 355

[Close]

BLAST of CmaCh06G003910 vs. NCBI nr
Match: KAG7028031.1 (Transcription initiation factor TFIID subunit 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 615.1 bits (1585), Expect = 3.5e-172
Identity = 317/355 (89.30%), Postives = 327/355 (92.11%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIA 60
           MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFK SALDALVDIA
Sbjct: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKESALDALVDIA 60

Query: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSGSVKNI 120
           IKYLRHLGKIAAFYANLAGRIECNVFDIIR LEELESSQGFQEAWEPIQCLANSGSVKNI
Sbjct: 61  IKYLRHLGKIAAFYANLAGRIECNVFDIIRGLEELESSQGFQEAWEPIQCLANSGSVKNI 120

Query: 121 VRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPST 180
           VRYVNSVEEIPFAHPLPCFPVIRNR+AIPSFLQIGE+PPGKHIA+WLPAFPDA TYDPST
Sbjct: 121 VRYVNSVEEIPFAHPLPCFPVIRNRRAIPSFLQIGETPPGKHIADWLPAFPDAHTYDPST 180

Query: 181 LWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARNGNGEIELSGGESNPFLGT 240
           LWRRSP E CAEKME+SRQ RKAEKS+SGLQKRL+SCGSARNGNGEIEL+GGESNPFLGT
Sbjct: 181 LWRRSPGEPCAEKMEMSRQRRKAEKSMSGLQKRLLSCGSARNGNGEIELTGGESNPFLGT 240

Query: 241 RLQEMEDGTAMDGISRLSVPEVVAPAIEATNG-----------------RPPVRFKLETS 300
            LQEMEDG+AMDGIS LSVPEVVAPAIEA NG                 RPPVRFKLET+
Sbjct: 241 CLQEMEDGSAMDGISHLSVPEVVAPAIEAINGCGLAKNEDDKARILPIERPPVRFKLETT 300

Query: 301 KTFLRGSRNLNAKMAGNRESVFWIRRDDERDEKKRRVEYIPRHS-ENSHEELNQS 338
           KTFLRGSRNLNAKMAGNRESVFW+RRDDERDEKKRRVEYIPRHS ENSHEELN S
Sbjct: 301 KTFLRGSRNLNAKMAGNRESVFWVRRDDERDEKKRRVEYIPRHSEENSHEELNLS 355

[Close]

BLAST of CmaCh06G003910 vs. TAIR 10
Match: AT4G34340.1 (TBP-associated factor 8 )

HSP 1 Score: 214.9 bits (546), Expect = 9.7e-56
Identity = 137/358 (38.27%), Postives = 201/358 (56.15%), Query Frame = 0


Query: 7   NNMKSKEQQSSDSRKCRG----NEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIAIK 66
           N  +++E   +D+    G     EF    ++ AVAQ+C S G++ FK  AL++L   A++
Sbjct: 2   NTERAQEGDRNDAASSSGCSESYEFSHAAAKAAVAQVCESVGYENFKDPALESLSGFALQ 61

Query: 67  YLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWEPIQCLANSGSVKNIVR 126
           Y+  LGK A  +ANL GR +CNVFDII AL++L  + G Q        L  S  ++ I+ 
Sbjct: 62  YILQLGKTATSFANLTGRSQCNVFDIILALDDLTDNNGEQGISSESCSLGRSIKLREIID 121

Query: 127 YVNSVEEIPFAHPLPCFPVI---RNRKAIPSFLQIGESPPGKHIANWLPAFPDARTYDPS 186
           +VNS EE+PF+ PLP FPV    R+RK IPSF++IGE+PPGKHI  WLPAFPD  TY  +
Sbjct: 122 FVNSSEEVPFSQPLPSFPVAISDRSRKMIPSFVEIGETPPGKHIPLWLPAFPDPHTYKET 181

Query: 187 TLWRRSPSELCAEKMEVSRQGRKAEKSVSGLQKRLVSCGSARN------GNGEIELSGGE 246
            +W    S+   +K+E +RQ RKAE+++  LQ++LV   S+RN         + E+   E
Sbjct: 182 PMWIERVSDPRGDKIEQARQRRKAERALLSLQRKLVCKISSRNPVWGDMDGVKEEMRDDE 241

Query: 247 SNPFLGTRLQEMEDGTAMDGISR--LSVPEVVAPAIEAT-------------NGRPPVRF 306
           S       L+ +  G  ++ ++R  LSV E  APA+EA                +P    
Sbjct: 242 S------ELRSVSSGEKVESLNRDGLSVIEAFAPAMEAARDGFSSEAHTEWKKNKPVALS 301

Query: 307 KLETSKTFLRGSRNLNAKMAGNRESVFWIRRDDERDEKKRRVEYIPRHSENSHEELNQ 337
           KL T K FL    +L+ +M G    + ++R +D RD+K+RR E+I R    +  +LNQ
Sbjct: 302 KLRTEKKFLGQPLDLSLQMKGEDRPISFVREED-RDDKRRRAEFILRQCMENPVDLNQ 352

[Close]

BLAST of CmaCh06G003910 vs. TAIR 10
Match: AT5G15570.1 (Bromodomain transcription factor )

HSP 1 Score: 156.8 bits (395), Expect = 3.2e-38
Identity = 102/294 (34.69%), Postives = 150/294 (51.02%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSA---------------GF 60
           ++ G     + +E Q   S   RGN+F   ++R+A AQIC S                 F
Sbjct: 2   INGGGEGGSQRRELQGKRSMS-RGNDFAYALARMATAQICESVEINSYQESSQSREGLRF 61

Query: 61  QRFKGSALDALVDIAIKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAW 120
             F+ +AL+ L D+ I+Y++++GK A FY N+AGR+E N  DI++ALE+L S  GF  A 
Sbjct: 62  SSFQETALETLTDVVIQYIQNIGKTAQFYVNMAGRVESNALDIVQALEDLGSGLGFDGAH 121

Query: 121 EPIQCLANSGSVKNIVRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGESPPGKHIAN 180
           +   CLA+SG VK+I+RY    EEIPF + LP FP  R ++  PSF  IG  PP +HI  
Sbjct: 122 DVEHCLADSGVVKDIIRYTGEAEEIPFVYSLPRFPFNRGKRPAPSFSDIGVEPPDEHIPV 181

Query: 181 WLPAFPDARTYDPSTLWRRSPSELCAEKMEVSRQGRKAEKSVSGLQK-----RLVSCGSA 240
           WLPAFP+ +  + S        E+  +K+E   Q R    S+  +Q+     RL    S 
Sbjct: 182 WLPAFPETKMSNGS-------EEINVDKIERDVQSRDNGSSLMSVQQSVDVDRLKVQKSM 241

Query: 241 RNGNGEIELSGGESNPFLGTRLQEMEDGTAMDGISRLSVPEVVAPAIEATNGRP 275
              + +  +   E NPFL   +   E   +   +SR+  P  +     +TN  P
Sbjct: 242 DQKDVQKPIEEPEGNPFLAAPIWVGEKNVS---LSRVVCPSELRKEEISTNHLP 284

[Close]

BLAST of CmaCh06G003910 vs. TAIR 10
Match: AT3G02160.1 (Bromodomain transcription factor )

HSP 1 Score: 155.2 bits (391), Expect = 9.2e-38
Identity = 80/193 (41.45%), Postives = 112/193 (58.03%), Query Frame = 0


Query: 1   MSDGARNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNS--------------AGFQ 60
           M++G       + +     +  RGN+F   ++R+AVAQIC S                F 
Sbjct: 17  MNNGVGEGGSQQRELHGKRKLFRGNDFAFSIARMAVAQICESVEVNPYQESQTREGVRFS 76

Query: 61  RFKGSALDALVDIAIKYLRHLGKIAAFYANLAGRIECNVFDIIRALEELESSQGFQEAWE 120
            F+ SALD L D+A++Y++ +GK A  YANLAGR++ N  DI++ALE+L S  GF    +
Sbjct: 77  SFQESALDTLTDVAVQYIQSIGKTAHLYANLAGRVDGNSLDILQALEDLGSGLGFAGVSD 136

Query: 121 PIQCLANSGSVKNIVRYVNSVEEIPFAHPLPCFPVIRNRKAIPSFLQIGESPPGKHIANW 180
              CLA+SG VK+I+RY    EEIPF + LP FP  + +K  PSF ++G  PP +HI  W
Sbjct: 137 TDHCLADSGVVKDIIRYTGEAEEIPFVYSLPRFPFSKEKKPAPSFSEVGAEPPDEHIPVW 196

[Close]

BLAST of CmaCh06G003910 vs. TAIR 10
Match: AT1G31240.1 (Bromodomain transcription factor )

HSP 1 Score: 89.4 bits (220), Expect = 6.2e-18
Identity = 67/220 (30.45%), Postives = 102/220 (46.36%), Query Frame = 0


Query: 6   RNNMKSKEQQSSDSRKCRGNEFGREVSRIAVAQICNSAGFQRFKGSALDALVDIAIKYLR 65
           R N K K +++SD       EF   +++IAV+QIC S G++    SAL+ L     K+L+
Sbjct: 5   RRNSKLKFEETSDQSPTSTAEFSFSLTKIAVSQICQSIGYKATDASALNTLTLTTTKFLQ 64

Query: 66  HLGKIAAFYANLAGRIECNVFDIIRALEELESSQ------GFQEAWEPIQCLANSGSVKN 125
            L ++A+ ++N A R E N+FDI+  L+++  S       G        QCL  S  ++N
Sbjct: 65  SLAELASSFSNTANRTEVNLFDIVNGLQDIALSTSDCFPGGSTVHDIESQCLIKSAVLRN 124

Query: 126 IVRYVNSVEEIPFAHPLPCFPVIRNRKAIPSF------LQIGESPPGKHIANWLPAFPD- 185
           +  +V    EIPFA PLP       R+   SF      + +  S     +  WLP FPD 
Sbjct: 125 LSDFVTYAPEIPFAKPLP------RRERDGSFGGDLDHVAVTRSVDVTSVPAWLPPFPDS 184

Query: 186 -------ARTYDPSTLWRRSPS----ELCAEKMEVSRQGR 202
                  ++      LW  S S    E+  E ++    GR
Sbjct: 185 SLCSDRCSKDNRSDHLWENSDSVIRREILPESLKSKSGGR 218

The following BLAST results are available for this feature:

BLAST of CmaCh06G003910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYZ9	1.4e-54	38.27	Transcription initiation factor TFIID subunit 8 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q5F489	2.8e-07	27.97	Transcription initiation factor TFIID subunit 3 OS=Gallus gallus OX=9031 GN=TAF3...	[more]
Q5VWG9	3.7e-07	27.12	Transcription initiation factor TFIID subunit 3 OS=Homo sapiens OX=9606 GN=TAF3 ...	[more]
Q5HZG4	8.2e-07	26.27	Transcription initiation factor TFIID subunit 3 OS=Mus musculus OX=10090 GN=Taf3...	[more]
Q9P6P0	8.4e-04	29.90	Transcription initiation factor TFIID subunit 3 OS=Schizosaccharomyces pombe (st...	[more]

BLAST of CmaCh06G003910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KY58	6.4e-188	100.00	Transcription initiation factor TFIID subunit 8 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GQQ1	8.1e-175	94.08	Transcription initiation factor TFIID subunit 8 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GMG0	1.4e-171	89.58	Transcription initiation factor TFIID subunit 8 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KVR9	8.9e-166	91.69	Transcription initiation factor TFIID subunit 8 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GRA3	2.0e-149	81.69	Transcription initiation factor TFIID subunit 8 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CmaCh06G003910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005710.1	1.3e-187	100.00	transcription initiation factor TFIID subunit 8-like isoform X1 [Cucurbita maxim...	[more]
XP_022953779.1	1.7e-174	94.08	transcription initiation factor TFIID subunit 8-like isoform X2 [Cucurbita mosch...	[more]
XP_023540161.1	4.8e-174	90.70	transcription initiation factor TFIID subunit 8-like isoform X1 [Cucurbita pepo ...	[more]
KAG6596483.1	9.1e-173	90.14	Transcription initiation factor TFIID subunit 8, partial [Cucurbita argyrosperma...	[more]
KAG7028031.1	3.5e-172	89.30	Transcription initiation factor TFIID subunit 8, partial [Cucurbita argyrosperma...	[more]

BLAST of CmaCh06G003910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34340.1	9.7e-56	38.27	TBP-associated factor 8	[more]
AT5G15570.1	3.2e-38	34.69	Bromodomain transcription factor	[more]
AT3G02160.1	9.2e-38	41.45	Bromodomain transcription factor	[more]
AT1G31240.1	6.2e-18	30.45	Bromodomain transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006565	Bromodomain associated domain	SMART	SM00576	17neu3	coord: 25..101 e-value: 3.6E-25 score: 99.6
IPR006565	Bromodomain associated domain	PFAM	PF07524	Bromo_TP	coord: 26..95 e-value: 1.1E-19 score: 70.2
IPR019473	Transcription factor TFIID, subunit 8, C-terminal	PFAM	PF10406	TAF8_C	coord: 162..207 e-value: 1.6E-7 score: 31.8
IPR019473	Transcription factor TFIID, subunit 8, C-terminal	CDD	cd08049	TAF8	coord: 162..214 e-value: 1.9126E-9 score: 51.1195
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 23..107 e-value: 7.6E-21 score: 75.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 36..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR46338:SF1	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8	coord: 1..336
IPR037818	Transcription initiation factor TFIID subunit 8	PANTHER	PTHR46338	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8	coord: 1..336

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G003910.1	CmaCh06G003910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0046982	protein heterodimerization activity