CmaCh06G003180 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G003180
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	conserved peptide upstream open reading frame 52
Location	Cma_Chr06: 1501042 .. 1501547 (-)
RNA-Seq Expression	CmaCh06G003180
Synteny	CmaCh06G003180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCGGTGCCTATTGATCTCCTCCTTGGCTCTCTGCTTCCTTCTTTGACTTCTTTCCATGGTGGTTCCTCGTCGCATCGTCTGAAGCGGCTTGAAAAGGGTGATCGACGTGGTAATCTTAGTTAACACGGTGTTCTTTTAGCGCATTTCGTTCTCTATTCGTATTTGCAGTCTTCTATTTTCTCCTTCTTTTGTCCGTTCGACGTTTTTGGAATTCCTTGAGAAATTACACTCGTAAGGTGTAGGAGTTTCTTTTTTGATCTTGAGATCTTTAGGCGGAAGCCTCTGAAATCGAGTTCCTGGGAATTTGGCTCCTCGTTAGGAGGGTTTTTGCAATCCTGATTCTTGTGCAAGGTATTGTGCTATAATCTTTTTATATTCTTGAGATCTTGAAGTTGCTCCGTGCTTTTTTGTAAGCACCTGGATCGAGTTTCTTTCGGGATTCTTTTATGATATCCTGGATATATATGCAGGTTCTAGCAGATTTGTTGTGCACTACATAA

mRNA sequence

ATGCCTTCGGTGCCTATTGATCTCCTCCTTGGCTCTCTGCTTCCTTCTTTGACTTCTTTCCATGGTGGTTCCTCGTCGCATCGTCTGAAGCGGCTTGAAAAGGGTGATCGACGTGTCTTCTATTTTCTCCTTCTTTTGTCCGTTCGACGTTTTTGGAATTCCTTGAGAAATTACACTCGTAAGGCGGAAGCCTCTGAAATCGAGTTCCTGGGAATTTGGCTCCTCGTTAGGAGGGTTCTAGCAGATTTGTTGTGCACTACATAA

Coding sequence (CDS)

ATGCCTTCGGTGCCTATTGATCTCCTCCTTGGCTCTCTGCTTCCTTCTTTGACTTCTTTCCATGGTGGTTCCTCGTCGCATCGTCTGAAGCGGCTTGAAAAGGGTGATCGACGTGTCTTCTATTTTCTCCTTCTTTTGTCCGTTCGACGTTTTTGGAATTCCTTGAGAAATTACACTCGTAAGGCGGAAGCCTCTGAAATCGAGTTCCTGGGAATTTGGCTCCTCGTTAGGAGGGTTCTAGCAGATTTGTTGTGCACTACATAA

Protein sequence

MPSVPIDLLLGSLLPSLTSFHGGSSSHRLKRLEKGDRRVFYFLLLLSVRRFWNSLRNYTRKAEASEIEFLGIWLLVRRVLADLLCTT

Homology

[Close]

BLAST of CmaCh06G003180 vs. ExPASy TrEMBL
Match: A0A314UVH6 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_07868 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 1  MPSVPIDLLLGSLLPSLTSFHGGSSSHRLKRLEKGDRRVFYFL 44
          MPSVPI LLL  L+P+LTSFHGGSSSHRLKR+EK DRR   F+
Sbjct: 1  MPSVPIQLLLRPLVPNLTSFHGGSSSHRLKRMEKSDRRALNFI 43

[Close]

BLAST of CmaCh06G003180 vs. ExPASy TrEMBL
Match: A0A5D3DN94 (BRI1-KD interacting protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001860 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.5e-08
Identity = 33/38 (86.84%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MPSVPIDLLLGSLLPSLTSFHGGSSSHRLKRLEKGDRR 39
          MPS  IDL L  LLPSLTSFHGGSSSHRLKRLEKGDRR
Sbjct: 1  MPSETIDLYLRPLLPSLTSFHGGSSSHRLKRLEKGDRR 38

[Close]

BLAST of CmaCh06G003180 vs. ExPASy TrEMBL
Match: A0A314XYQ7 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_28489 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.5e-08
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 1  MPSVPIDLLLGSLLPSLTSFHGGSSSHRLKRLEKGDRRVFYFL 44
          MPSVPI  LL  L+P+LTSFHGGSSSHRLKR+EK DRR   F+
Sbjct: 1  MPSVPIQFLLRPLVPNLTSFHGGSSSHRLKRMEKSDRRALNFI 43

[Close]

BLAST of CmaCh06G003180 vs. ExPASy TrEMBL
Match: A0A1S3B5I5 (uncharacterized protein LOC103486406 OS=Cucumis melo OX=3656 GN=LOC103486406 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.5e-08
Identity = 33/38 (86.84%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MPSVPIDLLLGSLLPSLTSFHGGSSSHRLKRLEKGDRR 39
          MPS  IDL L  LLPSLTSFHGGSSSHRLKRLEKGDRR
Sbjct: 1  MPSETIDLYLRPLLPSLTSFHGGSSSHRLKRLEKGDRR 38

[Close]

BLAST of CmaCh06G003180 vs. ExPASy TrEMBL
Match: A0A498IEK4 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_004478 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.9e-07
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 1  MPSVPIDLLLGSLLPSLTSFHGGSSSHRLKRLEKGDRRVF 41
          MPSVP  LLL   +P+LTSFHGGS SHRLKRLEKGDRR F
Sbjct: 1  MPSVPTHLLLRPSVPNLTSFHGGSCSHRLKRLEKGDRRGF 40

[Close]

BLAST of CmaCh06G003180 vs. NCBI nr
Match: KAG6596422.1 (hypothetical protein SDJN03_09602, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.1 bits (240), Expect = 8.2e-17
Identity = 56/84 (66.67%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 1  MPSVPIDLLLGSLLPSLTSFHGGSSSHRLKRLEKGDRRVFYFLLLLSVRRFWNSLRNYTR 60
          MPSVPIDLLLGSLLPSLTSFHGGSSSHRLKRLEKGDRR                      
Sbjct: 1  MPSVPIDLLLGSLLPSLTSFHGGSSSHRLKRLEKGDRR---------------------- 59

Query: 61 KAEASEIEFLGIWLLVRRVLADLL 85
             ASEIEFLGIWLLVRRV A L+
Sbjct: 61 ---ASEIEFLGIWLLVRRVFAILI 59

[Close]

BLAST of CmaCh06G003180 vs. NCBI nr
Match: KAG7027964.1 (hypothetical protein SDJN02_09143, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.6 bits (192), Expect = 3.0e-11
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MPSVPIDLLLGSLLPSLTSFHGGSSSHRLKRLEKGDRR 39
          MPSVPIDLLLGSLLPSLTSFHGGSSSHRLKRLEKGDRR
Sbjct: 1  MPSVPIDLLLGSLLPSLTSFHGGSSSHRLKRLEKGDRR 38

[Close]

BLAST of CmaCh06G003180 vs. NCBI nr
Match: KAG7017317.1 (hypothetical protein SDJN02_19180, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.8 bits (190), Expect = 5.2e-11
Identity = 50/94 (53.19%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 1   MPSVPIDLLLGSLLPSLTSFHGGSSSHRLKRLEKGDRRVFYFLLLLSVRRFWNSLRNYTR 60
           MPSVPIDL L  LLPSLTSFHGGSSSHRLKRLEKGDRR                      
Sbjct: 139 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRA--------------------- 198

Query: 61  KAEASEIEFLGIWLLVRR---------VLADLLC 86
             EASE    G WLLV R         VLA  LC
Sbjct: 199 -VEASEKRVTGNWLLVERGFTILLLCEVLAGFLC 210

[Close]

BLAST of CmaCh06G003180 vs. NCBI nr
Match: KAG6580562.1 (hypothetical protein SDJN03_20564, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 8.8e-11
Identity = 47/84 (55.95%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 1  MPSVPIDLLLGSLLPSLTSFHGGSSSHRLKRLEKGDRRVFYFLLLLSVRRFWNSLRNYTR 60
          MPSVPIDL L  LLPSLTSFHGGSSSHRLKRLEKGDRR                      
Sbjct: 1  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRA--------------------- 60

Query: 61 KAEASEIEFLGIWLLVRRVLADLL 85
            EASE    G WLLV R    LL
Sbjct: 61 -VEASEKRVTGNWLLVERGFTILL 62

[Close]

BLAST of CmaCh06G003180 vs. NCBI nr
Match: PQM38719.1 (uncharacterized protein Pyn_07868 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-08
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 1  MPSVPIDLLLGSLLPSLTSFHGGSSSHRLKRLEKGDRRVFYFL 44
          MPSVPI LLL  L+P+LTSFHGGSSSHRLKR+EK DRR   F+
Sbjct: 1  MPSVPIQLLLRPLVPNLTSFHGGSSSHRLKRMEKSDRRALNFI 43

[Close]

BLAST of CmaCh06G003180 vs. TAIR 10
Match: AT2G37478.1 (conserved peptide upstream open reading frame 52 )

HSP 1 Score: 44.7 bits (104), Expect = 4.5e-05
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 1  MPSVPIDLL-LGSLLPSLTSFHGGSSSHRLKRLEKGDRR 39
          MPSVP  LL L SL+PSLT +H G SS+RLK LEK D R
Sbjct: 1  MPSVPSKLLPLLSLIPSLTPYHSGLSSNRLKPLEKCDWR 39

The following BLAST results are available for this feature:

BLAST of CmaCh06G003180 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G003180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A314UVH6	2.6e-08	74.42	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_078...	[more]
A0A5D3DN94	7.5e-08	86.84	BRI1-KD interacting protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A314XYQ7	7.5e-08	72.09	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_284...	[more]
A0A1S3B5I5	7.5e-08	86.84	uncharacterized protein LOC103486406 OS=Cucumis melo OX=3656 GN=LOC103486406 PE=...	[more]
A0A498IEK4	4.9e-07	77.50	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_004478 PE=4 SV=1	[more]

BLAST of CmaCh06G003180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596422.1	8.2e-17	66.67	hypothetical protein SDJN03_09602, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7027964.1	3.0e-11	100.00	hypothetical protein SDJN02_09143, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7017317.1	5.2e-11	53.19	hypothetical protein SDJN02_19180, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6580562.1	8.8e-11	55.95	hypothetical protein SDJN03_20564, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PQM38719.1	5.3e-08	74.42	uncharacterized protein Pyn_07868 [Prunus yedoensis var. nudiflora]	[more]

BLAST of CmaCh06G003180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37478.1	4.5e-05	66.67	conserved peptide upstream open reading frame 52	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G003180.1	CmaCh06G003180.1	mRNA