CmaCh06G003060 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G003060
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-type E3 ubiquitin transferase
Location	Cma_Chr06: 1454169 .. 1454720 (-)
RNA-Seq Expression	CmaCh06G003060
Synteny	CmaCh06G003060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCCCATCACCACCGTGATGAATCGACCAACGTCGCCGTTCCCCTCCCCTCGTCGGACCGTTGCTTTCTCTCCAATCGAGTTCATCCTCGCCCTCGTCGCTGTTATCATCATCCCCGCCCTTGTCTACTCCTTCTTCATCGCCATCAAGTGCTCCCCCAATCTCCTCCGCCTCTGGCCGCGGAGATCTGCCAGGCTATCCGGCGCCGCCGTCACCATGGTGGCTGTGAATCGTATTTCTAATGATGTGGCGGCGGCTGTTATGTACAACAAGGACCAGCACTGTAAGGAAGTCGGTAACGAGTGTCCTGTGTGCCTATCGGCGTTCGCCGACGGCGAGAAGGTCCGGCAACTCGCCGCCTGTAAACACTCTTTTCATGTAGATTGCATCGACATGTGGCTCTATTCTCACCCCAATTGCCCTGTTTGTCGCGCCACCGTCGCCATCGCCGTTAAACGGCCGATTAACAACCGAGCACCGCCGCGGCCAGCGGCTTCTAGGAACGACGATTACCAGCAAGGTCTGCCGGATGCCGGCAATTTAGTTTGA

mRNA sequence

ATGGACCCCATCACCACCGTGATGAATCGACCAACGTCGCCGTTCCCCTCCCCTCGTCGGACCGTTGCTTTCTCTCCAATCGAGTTCATCCTCGCCCTCGTCGCTGTTATCATCATCCCCGCCCTTGTCTACTCCTTCTTCATCGCCATCAAGTGCTCCCCCAATCTCCTCCGCCTCTGGCCGCGGAGATCTGCCAGGCTATCCGGCGCCGCCGTCACCATGGTGGCTGTGAATCGTATTTCTAATGATGTGGCGGCGGCTGTTATGTACAACAAGGACCAGCACTGTAAGGAAGTCGGTAACGAGTGTCCTGTGTGCCTATCGGCGTTCGCCGACGGCGAGAAGGTCCGGCAACTCGCCGCCTGTAAACACTCTTTTCATGTAGATTGCATCGACATGTGGCTCTATTCTCACCCCAATTGCCCTGTTTGTCGCGCCACCGTCGCCATCGCCGTTAAACGGCCGATTAACAACCGAGCACCGCCGCGGCCAGCGGCTTCTAGGAACGACGATTACCAGCAAGGTCTGCCGGATGCCGGCAATTTAGTTTGA

Coding sequence (CDS)

ATGGACCCCATCACCACCGTGATGAATCGACCAACGTCGCCGTTCCCCTCCCCTCGTCGGACCGTTGCTTTCTCTCCAATCGAGTTCATCCTCGCCCTCGTCGCTGTTATCATCATCCCCGCCCTTGTCTACTCCTTCTTCATCGCCATCAAGTGCTCCCCCAATCTCCTCCGCCTCTGGCCGCGGAGATCTGCCAGGCTATCCGGCGCCGCCGTCACCATGGTGGCTGTGAATCGTATTTCTAATGATGTGGCGGCGGCTGTTATGTACAACAAGGACCAGCACTGTAAGGAAGTCGGTAACGAGTGTCCTGTGTGCCTATCGGCGTTCGCCGACGGCGAGAAGGTCCGGCAACTCGCCGCCTGTAAACACTCTTTTCATGTAGATTGCATCGACATGTGGCTCTATTCTCACCCCAATTGCCCTGTTTGTCGCGCCACCGTCGCCATCGCCGTTAAACGGCCGATTAACAACCGAGCACCGCCGCGGCCAGCGGCTTCTAGGAACGACGATTACCAGCAAGGTCTGCCGGATGCCGGCAATTTAGTTTGA

Protein sequence

MDPITTVMNRPTSPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLWPRRSARLSGAAVTMVAVNRISNDVAAAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQLAACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDAGNLV

Homology

[Close]

BLAST of CmaCh06G003060 vs. ExPASy Swiss-Prot
Match: O80927 (RING-H2 finger protein ATL33 OS=Arabidopsis thaliana OX=3702 GN=ATL33 PE=2 SV=2)

HSP 1 Score: 136.3 bits (342), Expect = 3.4e-31
Identity = 75/196 (38.27%), Postives = 112/196 (57.14%), Query Frame = 0


Query: 5   TTVMNRPTSPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLWPRRS 64
           T ++  P  PFP+P R++  +P++ I  ++A + +PALVY+ F    CS +       R+
Sbjct: 40  TFIIIGPPPPFPAPPRSIDLTPLKLIFVVIAFVAVPALVYALFFNGPCSSSRRNSSSSRT 99

Query: 65  ARLSG----AAVTMVAVNRISNDVAAAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQLA 124
           +  S     A V    +   +    +   ++KD H KE+GNEC VCL  F D +++RQL+
Sbjct: 100 SSSSDDTPHATVDTPPITETTVTSESGGKFHKDTHSKEIGNECSVCLMVFTDSDELRQLS 159

Query: 125 ACKHSFHVDCIDMWLYSHPNCPVCRATVAI-----AVKRPIN-----NRAPPR---PAAS 184
            CKH+FHV CI+ WL  HPNCP+CR  V++     A   P+N     NR+       A S
Sbjct: 160 ECKHAFHVLCIETWLKDHPNCPICRTDVSVKQQTEAPNVPVNVNGNVNRSGGNRRVSATS 219

[Close]

BLAST of CmaCh06G003060 vs. ExPASy Swiss-Prot
Match: Q9XF63 (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 88  VMYNKDQHCKEVGNECPVCLSAFADGEKVRQLAACKHSFHVDCIDMWLYSHPNCPVCRAT 147
           +++ +   CK+ G EC +CLS    G+K R L  C HSFHV+CIDMW  SH  CP+CR T
Sbjct: 113 IVFFRQDSCKD-GLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNT 172

Query: 148 V 149
           V
Sbjct: 173 V 172

[Close]

BLAST of CmaCh06G003060 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-13
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 86  AAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQLAACKHSFHVDCIDMWLYSHPNCPVCR 145
           AA    +++   + G EC VCL+   DGE+ R L  C H FH +C+DMWL SH  CP+CR
Sbjct: 117 AAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 176

Query: 146 ATVAIAVKRPINNRAPPRPAAS 168
            TV   V  P     PP P AS
Sbjct: 177 LTV--VVPPPPLPPVPPEPPAS 196

[Close]

BLAST of CmaCh06G003060 vs. ExPASy Swiss-Prot
Match: P0C035 (RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.1e-13
Identity = 31/49 (63.27%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 100 GNECPVCLSAFADGEKVRQLAACKHSFHVDCIDMWLYSHPNCPVCRATV 149
           G EC VCLS   DG+K R L  C H FHVDCIDMW  SH  CP+CR TV
Sbjct: 117 GLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTV 165

[Close]

BLAST of CmaCh06G003060 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 100 GNECPVCLSAFADGEKVRQLAACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRP 156
           G EC VCL+ F + E +R L  C H+FH++CID WL SH NCP+CRA V +  + P
Sbjct: 132 GTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPP 187

[Close]

BLAST of CmaCh06G003060 vs. ExPASy TrEMBL
Match: A0A6J1I6T3 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111470149 PE=3 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 3.0e-99
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MDPITTVMNRPTSPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60
           MDPITTVMNRPTSPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW
Sbjct: 1   MDPITTVMNRPTSPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60

Query: 61  PRRSARLSGAAVTMVAVNRISNDVAAAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQLA 120
           PRRSARLSGAAVTMVAVNRISNDVAAAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQLA
Sbjct: 61  PRRSARLSGAAVTMVAVNRISNDVAAAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQLA 120

Query: 121 ACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDAG 180
           ACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDAG
Sbjct: 121 ACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDAG 180

Query: 181 NLV 184
           NLV
Sbjct: 181 NLV 183

[Close]

BLAST of CmaCh06G003060 vs. ExPASy TrEMBL
Match: A0A6J1FK72 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111444775 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.2e-93
Identity = 174/183 (95.08%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1   MDPITTVMNRPTSPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60
           MD  TTVMNRPT PFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW
Sbjct: 1   MDVSTTVMNRPTPPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60

Query: 61  PRRSARLSGAAVTMVAVNRISNDVAAAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQLA 120
           PRRSARLSG AVT+VAVNRISNDVAAAV YNKD+H KEVGNECPVCLSAF DGEKVRQLA
Sbjct: 61  PRRSARLSGTAVTVVAVNRISNDVAAAVKYNKDEHGKEVGNECPVCLSAFVDGEKVRQLA 120

Query: 121 ACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDAG 180
           ACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDAG
Sbjct: 121 ACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDAG 180

Query: 181 NLV 184
           NLV
Sbjct: 181 NLV 183

[Close]

BLAST of CmaCh06G003060 vs. ExPASy TrEMBL
Match: A0A0A0LA67 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_3G734330 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 4.1e-72
Identity = 138/184 (75.00%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 1   MDPITTVMNRPTSPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60
           MD   + MNR   P+P+P RTV FSPIEFIL LVAVI IPALVYSF  AIKC PN LRLW
Sbjct: 1   MDATASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALVYSFIFAIKCPPNFLRLW 60

Query: 61  PRRSARLSGAAVTMVAVNRI-SNDVAAAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQL 120
            +RS RLSGA  T+V  NR  S+DVAAAV YNKD+HCKEVGNECPVCLSAF DGE++RQL
Sbjct: 61  RQRSTRLSGAGATVVVGNRTPSSDVAAAVKYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120

Query: 121 AACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDA 180
           A CKHSFHVDCIDMWLYSHPNCPVCRA V + VKRPI+N AP RPAASR+DD+ QGLPDA
Sbjct: 121 AVCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPIHNHAPRRPAASRSDDFHQGLPDA 180

Query: 181 GNLV 184
           G LV
Sbjct: 181 GYLV 184

[Close]

BLAST of CmaCh06G003060 vs. ExPASy TrEMBL
Match: A0A6J1F238 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111441690 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 4.1e-72
Identity = 141/184 (76.63%), Postives = 152/184 (82.61%), Query Frame = 0


Query: 1   MDPITTVMNRPTSPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60
           MD    +MNR T P P+P RT  FSPIEFIL L+AVI IPALVYSFF AIKC P LLRLW
Sbjct: 4   MDTSAALMNRSTPPHPTPHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLLRLW 63

Query: 61  PRRSARLSGAAVTMVAVNRIS-NDVAAAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQL 120
            RRSARLSGA VT+VA NR S +DVA    YNKD+  KEVGNECPVCLSAF DGE++RQL
Sbjct: 64  RRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEIRQL 123

Query: 121 AACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDA 180
            ACKHSFHVDCIDMW YSHPNCPVCRA +AIAVKRPINNRAP RPAASR+DD+ QGLPDA
Sbjct: 124 IACKHSFHVDCIDMWFYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGLPDA 183

Query: 181 GNLV 184
           GNLV
Sbjct: 184 GNLV 187

[Close]

BLAST of CmaCh06G003060 vs. ExPASy TrEMBL
Match: A0A5D3DN65 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001760 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.6e-71
Identity = 137/184 (74.46%), Postives = 148/184 (80.43%), Query Frame = 0


Query: 1   MDPITTVMNRPTSPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60
           MD   + MNR   P+P+P RTV FSPIEFIL LVAVI IPAL YSF  AIKC PN LRLW
Sbjct: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60

Query: 61  PRRSARLSGAAVTMVAVNRI-SNDVAAAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQL 120
            +RS RLS A VTMV  NR  S+DVAAAV YNKD+HCKEVG ECPVCLSAF DGE++RQL
Sbjct: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120

Query: 121 AACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDA 180
             CKHSFHVDCIDMWLYSHPNCPVCRA V + VKRPINN AP RPAASR+DD+ QGLPDA
Sbjct: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180

Query: 181 GNLV 184
           G LV
Sbjct: 181 GYLV 184

[Close]

BLAST of CmaCh06G003060 vs. NCBI nr
Match: XP_022971418.1 (RING-H2 finger protein ATL33-like [Cucurbita maxima])

HSP 1 Score: 370.9 bits (951), Expect = 6.2e-99
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MDPITTVMNRPTSPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60
           MDPITTVMNRPTSPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW
Sbjct: 1   MDPITTVMNRPTSPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60

Query: 61  PRRSARLSGAAVTMVAVNRISNDVAAAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQLA 120
           PRRSARLSGAAVTMVAVNRISNDVAAAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQLA
Sbjct: 61  PRRSARLSGAAVTMVAVNRISNDVAAAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQLA 120

Query: 121 ACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDAG 180
           ACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDAG
Sbjct: 121 ACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDAG 180

Query: 181 NLV 184
           NLV
Sbjct: 181 NLV 183

[Close]

BLAST of CmaCh06G003060 vs. NCBI nr
Match: XP_023540894.1 (RING-H2 finger protein ATL33-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355.1 bits (910), Expect = 3.5e-94
Identity = 175/183 (95.63%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MDPITTVMNRPTSPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60
           MD  TTVMNRPT PFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW
Sbjct: 1   MDTSTTVMNRPTPPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60

Query: 61  PRRSARLSGAAVTMVAVNRISNDVAAAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQLA 120
           PRRSARL GAAVT+VAVNRISNDVAAAV+YNKDQHCKEVGNECPVCLSAFADGEKVRQLA
Sbjct: 61  PRRSARLPGAAVTVVAVNRISNDVAAAVVYNKDQHCKEVGNECPVCLSAFADGEKVRQLA 120

Query: 121 ACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDAG 180
           ACKHSFHVDCIDMWLYSHPNCPVCRATV IAVKRPINNRAPPRPAASRN+DYQQGLPDAG
Sbjct: 121 ACKHSFHVDCIDMWLYSHPNCPVCRATVTIAVKRPINNRAPPRPAASRNNDYQQGLPDAG 180

Query: 181 NLV 184
           NLV
Sbjct: 181 NLV 183

[Close]

BLAST of CmaCh06G003060 vs. NCBI nr
Match: KAG6596414.1 (RING-H2 finger protein ATL33, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027958.1 RING-H2 finger protein ATL33, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 350.9 bits (899), Expect = 6.6e-93
Identity = 174/183 (95.08%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1   MDPITTVMNRPTSPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60
           MD  TTVMNRPT PFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW
Sbjct: 1   MDASTTVMNRPTPPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60

Query: 61  PRRSARLSGAAVTMVAVNRISNDVAAAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQLA 120
           PRRSARLSG AVT+VAVNRISNDVAAAV YNKD+H KEVGNECPVCLSAF DGEKVRQLA
Sbjct: 61  PRRSARLSGTAVTVVAVNRISNDVAAAVKYNKDEHGKEVGNECPVCLSAFVDGEKVRQLA 120

Query: 121 ACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDAG 180
           ACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDAG
Sbjct: 121 ACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDAG 180

Query: 181 NLV 184
           NLV
Sbjct: 181 NLV 183

[Close]

BLAST of CmaCh06G003060 vs. NCBI nr
Match: XP_022938590.1 (RING-H2 finger protein ATL33-like [Cucurbita moschata])

HSP 1 Score: 350.5 bits (898), Expect = 8.7e-93
Identity = 174/183 (95.08%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1   MDPITTVMNRPTSPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60
           MD  TTVMNRPT PFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW
Sbjct: 1   MDVSTTVMNRPTPPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60

Query: 61  PRRSARLSGAAVTMVAVNRISNDVAAAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQLA 120
           PRRSARLSG AVT+VAVNRISNDVAAAV YNKD+H KEVGNECPVCLSAF DGEKVRQLA
Sbjct: 61  PRRSARLSGTAVTVVAVNRISNDVAAAVKYNKDEHGKEVGNECPVCLSAFVDGEKVRQLA 120

Query: 121 ACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDAG 180
           ACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDAG
Sbjct: 121 ACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDAG 180

Query: 181 NLV 184
           NLV
Sbjct: 181 NLV 183

[Close]

BLAST of CmaCh06G003060 vs. NCBI nr
Match: XP_038905078.1 (RING-H2 finger protein ATL33 [Benincasa hispida])

HSP 1 Score: 290.8 bits (743), Expect = 8.1e-75
Identity = 145/184 (78.80%), Postives = 156/184 (84.78%), Query Frame = 0


Query: 1   MDPITTVMNRPTSPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60
           MD   ++MNR   P P+P RTV FSPIEFIL LVAVI IPALVYSFF AIKC PNLLRLW
Sbjct: 1   MDKSASLMNRSPPPSPTPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLW 60

Query: 61  PRRSARLSGAAVTMVAVNRI-SNDVAAAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQL 120
             RSARLSGAAVT+V  NR  S+DVAAAV YNKD+HCKEV NECPVCLSAF DGE++RQL
Sbjct: 61  RHRSARLSGAAVTVVVRNRTPSSDVAAAVKYNKDEHCKEVSNECPVCLSAFDDGEEIRQL 120

Query: 121 AACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDA 180
           AACKHSFHVDCIDMWLYSHPNCPVCRA V +AVKRPINN AP RPA SR+DD+QQGLPDA
Sbjct: 121 AACKHSFHVDCIDMWLYSHPNCPVCRAAVPVAVKRPINNHAPRRPAVSRSDDFQQGLPDA 180

Query: 181 GNLV 184
           G LV
Sbjct: 181 GYLV 184

[Close]

BLAST of CmaCh06G003060 vs. TAIR 10
Match: AT2G37580.1 (RING/U-box superfamily protein )

HSP 1 Score: 136.3 bits (342), Expect = 2.4e-32
Identity = 75/196 (38.27%), Postives = 112/196 (57.14%), Query Frame = 0


Query: 5   TTVMNRPTSPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLWPRRS 64
           T ++  P  PFP+P R++  +P++ I  ++A + +PALVY+ F    CS +       R+
Sbjct: 40  TFIIIGPPPPFPAPPRSIDLTPLKLIFVVIAFVAVPALVYALFFNGPCSSSRRNSSSSRT 99

Query: 65  ARLSG----AAVTMVAVNRISNDVAAAVMYNKDQHCKEVGNECPVCLSAFADGEKVRQLA 124
           +  S     A V    +   +    +   ++KD H KE+GNEC VCL  F D +++RQL+
Sbjct: 100 SSSSDDTPHATVDTPPITETTVTSESGGKFHKDTHSKEIGNECSVCLMVFTDSDELRQLS 159

Query: 125 ACKHSFHVDCIDMWLYSHPNCPVCRATVAI-----AVKRPIN-----NRAPPR---PAAS 184
            CKH+FHV CI+ WL  HPNCP+CR  V++     A   P+N     NR+       A S
Sbjct: 160 ECKHAFHVLCIETWLKDHPNCPICRTDVSVKQQTEAPNVPVNVNGNVNRSGGNRRVSATS 219

[Close]

BLAST of CmaCh06G003060 vs. TAIR 10
Match: AT1G72310.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-14
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 88  VMYNKDQHCKEVGNECPVCLSAFADGEKVRQLAACKHSFHVDCIDMWLYSHPNCPVCRAT 147
           +++ +   CK+ G EC +CLS    G+K R L  C HSFHV+CIDMW  SH  CP+CR T
Sbjct: 113 IVFFRQDSCKD-GLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNT 172

Query: 148 V 149
           V
Sbjct: 173 V 172

[Close]

BLAST of CmaCh06G003060 vs. TAIR 10
Match: AT1G53820.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-14
Identity = 31/49 (63.27%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 100 GNECPVCLSAFADGEKVRQLAACKHSFHVDCIDMWLYSHPNCPVCRATV 149
           G EC VCLS   DG+K R L  C H FHVDCIDMW  SH  CP+CR TV
Sbjct: 117 GLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTV 165

[Close]

BLAST of CmaCh06G003060 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 8.6e-14
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 100 GNECPVCLSAFADGEKVRQLAACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRP 156
           G EC VCL+ F + E +R L  C H+FH++CID WL SH NCP+CRA V +  + P
Sbjct: 132 GTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPP 187

[Close]

BLAST of CmaCh06G003060 vs. TAIR 10
Match: AT4G15975.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-13
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 102 ECPVCLSAFADGEKVRQLAACKHSFHVDCIDMWLYSHPNCPVCRATV 149
           EC VCLS F D E  R +  CKH+FHVDCIDMW +SH +CP+CR+ +
Sbjct: 75  ECSVCLSEFKDNESGRVMPNCKHTFHVDCIDMWFHSHSSCPLCRSLI 121

The following BLAST results are available for this feature:

BLAST of CmaCh06G003060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80927	3.4e-31	38.27	RING-H2 finger protein ATL33 OS=Arabidopsis thaliana OX=3702 GN=ATL33 PE=2 SV=2	[more]
Q9XF63	1.4e-13	50.82	RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1	[more]
Q9LRB7	3.2e-13	45.12	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]
P0C035	4.1e-13	63.27	RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1	[more]
Q9LX93	1.2e-12	51.79	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]

BLAST of CmaCh06G003060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6T3	3.0e-99	100.00	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111470149 P...	[more]
A0A6J1FK72	4.2e-93	95.08	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111444775...	[more]
A0A0A0LA67	4.1e-72	75.00	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_3G734330 PE...	[more]
A0A6J1F238	4.1e-72	76.63	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111441690...	[more]
A0A5D3DN65	2.6e-71	74.46	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of CmaCh06G003060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971418.1	6.2e-99	100.00	RING-H2 finger protein ATL33-like [Cucurbita maxima]	[more]
XP_023540894.1	3.5e-94	95.63	RING-H2 finger protein ATL33-like [Cucurbita pepo subsp. pepo]	[more]
KAG6596414.1	6.6e-93	95.08	RING-H2 finger protein ATL33, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022938590.1	8.7e-93	95.08	RING-H2 finger protein ATL33-like [Cucurbita moschata]	[more]
XP_038905078.1	8.1e-75	78.80	RING-H2 finger protein ATL33 [Benincasa hispida]	[more]

BLAST of CmaCh06G003060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37580.1	2.4e-32	38.27	RING/U-box superfamily protein	[more]
AT1G72310.1	1.0e-14	50.82	RING/U-box superfamily protein	[more]
AT1G53820.1	2.9e-14	63.27	RING/U-box superfamily protein	[more]
AT5G10380.1	8.6e-14	51.79	RING/U-box superfamily protein	[more]
AT4G15975.1	1.1e-13	59.57	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 103..144 e-value: 3.0E-6 score: 36.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 101..145 e-value: 5.2E-14 score: 52.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 103..145 score: 12.297489
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 70..150 e-value: 4.6E-20 score: 73.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..183
None	No IPR available	PANTHER	PTHR45676:SF88	RING-H2 FINGER PROTEIN ATL33	coord: 10..183
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 102..145 e-value: 1.12361E-16 score: 68.1055
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 102..151
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 10..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G003060.1	CmaCh06G003060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane