CmaCh06G003030 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G003030
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	H/ACA ribonucleoprotein complex subunit 4-like
Location	Cma_Chr06: 1440940 .. 1443174 (+)
RNA-Seq Expression	CmaCh06G003030
Synteny	CmaCh06G003030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATGTTGAGATTTCTCGTTCGGAGAAGAAGAAGAAGAAGCATCGGAGCAAGGATGAAGAAGTTTCACCAGTGGTAGCTTCCGACGAGCAGCCGCTCAAGGACGTTGCCGACTTTTTGATCAAGCCGCAAAGTTTTACTCCTCCGGTGGATACATCTCAATGGCCTATTCTTCTGAAGAACTACGACCGTCTCAATGTACGTACTGGACACTACACTCCTTTACCGTCTGGTTTCTCTCCTCTGAAGCGGCCTCTGATTGACTACATCAGGTATGGTATTCTCAACCTTGATAAACCGGCGAATCCTTCGTCGCACGAGGTTGTGGCTTGGATTAAACGGATTCTTCGGGTTGATAAAACGGGTCATAGTGGTACACTGGATCCGAAGGTTACTGGTAATTTGATTGTGTGCATTGATCGAGCCACGCGGCTCGTGAAGTCGCAACAGGGTGCTGGTAAGGAGTATGTGTGTGTTGCTCGTTTGCATTCTGCTGTGCCCGATGTTGCTAAGGTGGCTCGGGCTCTGGAGACGCTCACTGGAGCTGTGTTTCAGAGGCCGCCTTTGATATCGGCTGTGAAAAGACAGCTTAGGATTAGGACTATATATGAGAGTAAGCTTCTTGAATATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAGGCTGGAACTTACGTTAGAACGTTGTGTGTGCACTTGGGTCTCATTCTTGGTGTTGGAGGGCATATGCAAGAACTTAGGAGGGTGAGGTCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTTCAAGGATGAGAGTTACCTGAGGAGGGTAATTATGCCTCTTGAGGTGGTTTTGACAAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCTAAGTTAATGATTCCAGGGCTGTTGAGATTTGAGAATGATATTGAAGTTGGGGAAGAAGTTGTACTTATGACCACCAAGGGTGAAGCCATTGCTCTTGGTATTGCTGAGATGACCACTTCTGTGATGGCAACTTGTGATCATGGCATTGTTGCAAAGATCAAAAGGGTTGTGATGGATCGTGATACTTACCCAAGGAAATGGGGACTAGGTCCAAGGGCATCAATGAAGAAGAAGCTTATTGGAGAAGGGAAGTTGGATAAGCATGGAAAACCAAATGAGAACACTCCTCAAGAGTGGCTGAGGAATTTGGTTTTGCCTACTGGTGGGGATTCATTGGTTGCAAGCGTGTTCGCTTCCGATACTGCCACTCCAAAGCAGAACGTTGCAGCTGATGAGGAAAAAGATGGTGTAGGGCAGAAGCGGAAACACGACGAGGAAACAGAAGCTGCAGCTCCTGCTAAGAAACTGAAAGGTGAAAAGGCCGAGGAAGCTGAAGAAGTTGAAGAATCCGGGAAGAAAGAGAAGAAAAAGAAGAAGAAAGATAAAGAGAAGGGAGGCATAGAAGCTTCAGATGATGAAAAAGCTGAGAAACCAGAGAAGAAAAAGAAGAAGAAAGACAAGGATGCAAAAGAAGCGGGTACACCGGAGACAGAGAAGTCGGAGAAGAAGAAGAAGAAGAAGAAAGACAAGGAGTCCGGAAATGATACTCAAAATGGCGAAGCAGATGGGCATGTTGATGGGGGGAGTGAGAAGAAAAAGAAGAACAAAGAAGAAGCCAGACGAATAAGAAAGATGTAGTTTTAGTTTCTAGATTGTAAGGCCATCATCTATTTCAGTTTCTAGATTTTGCAACATCTTTTCTATGCATTTTCTGTAGAATTTTTGCTTAAACACAAAATGGTATGGTAGGCTGTTCGATTGTTCTTACCAAAACTTCCTTGCTGCTGCTGCTGCTATTCCCTTCTGGATTTCATGTCGATCTTTCCATCTTTTGCAAGCCCCTAATGATGCTCGATTATCAAGAACCCCTCAAGGCTGGAAGCAGGAAATTGGCTAACATCTATGAACATATTGGGCCTGAGAGGGATCCATTGGGCTTTTGTTTTGGGCCTAAGAGTGATCCCATTTGCTTTTAAACGCTATTGCATTCTCATAAATTAATGTACGTGTATCATGAATGTAGCTTAGCTTCCAACAAATATTAGTCTAAATTGACTTGGGTCATTTTCTTTTTAAAGTCAACTCAACCATCGAGCTTAAATGTATGGAAGTCGAACATTTGTC

mRNA sequence

ATGTCGGATGTTGAGATTTCTCGTTCGGAGAAGAAGAAGAAGAAGCATCGGAGCAAGGATGAAGAAGTTTCACCAGTGGTAGCTTCCGACGAGCAGCCGCTCAAGGACGTTGCCGACTTTTTGATCAAGCCGCAAAGTTTTACTCCTCCGGTGGATACATCTCAATGGCCTATTCTTCTGAAGAACTACGACCGTCTCAATGTACGTACTGGACACTACACTCCTTTACCGTCTGGTTTCTCTCCTCTGAAGCGGCCTCTGATTGACTACATCAGGTATGGTATTCTCAACCTTGATAAACCGGCGAATCCTTCGTCGCACGAGGTTGTGGCTTGGATTAAACGGATTCTTCGGGTTGATAAAACGGGTCATAGTGGTACACTGGATCCGAAGGTTACTGGTAATTTGATTGTGTGCATTGATCGAGCCACGCGGCTCGTGAAGTCGCAACAGGGTGCTGGTAAGGAGTATGTGTGTGTTGCTCGTTTGCATTCTGCTGTGCCCGATGTTGCTAAGGTGGCTCGGGCTCTGGAGACGCTCACTGGAGCTGTGTTTCAGAGGCCGCCTTTGATATCGGCTGTGAAAAGACAGCTTAGGATTAGGACTATATATGAGAGTAAGCTTCTTGAATATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAGGCTGGAACTTACGTTAGAACGTTGTGTGTGCACTTGGGTCTCATTCTTGGTGTTGGAGGGCATATGCAAGAACTTAGGAGGGTGAGGTCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTTCAAGGATGAGAGTTACCTGAGGAGGGTAATTATGCCTCTTGAGGTGGTTTTGACAAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCTAAGTTAATGATTCCAGGGCTGTTGAGATTTGAGAATGATATTGAAGTTGGGGAAGAAGTTGTACTTATGACCACCAAGGGTGAAGCCATTGCTCTTGGTATTGCTGAGATGACCACTTCTGTGATGGCAACTTGTGATCATGGCATTGTTGCAAAGATCAAAAGGGTTGTGATGGATCGTGATACTTACCCAAGGAAATGGGGACTAGGTCCAAGGGCATCAATGAAGAAGAAGCTTATTGGAGAAGGGAAGTTGGATAAGCATGGAAAACCAAATGAGAACACTCCTCAAGAGTGGCTGAGGAATTTGGTTTTGCCTACTGGTGGGGATTCATTGGTTGCAAGCGTGTTCGCTTCCGATACTGCCACTCCAAAGCAGAACGTTGCAGCTGATGAGGAAAAAGATGGTGTAGGGCAGAAGCGGAAACACGACGAGGAAACAGAAGCTGCAGCTCCTGCTAAGAAACTGAAAGGTGAAAAGGCCGAGGAAGCTGAAGAAGTTGAAGAATCCGGGAAGAAAGAGAAGAAAAAGAAGAAGAAAGATAAAGAGAAGGGAGGCATAGAAGCTTCAGATGATGAAAAAGCTGAGAAACCAGAGAAGAAAAAGAAGAAGAAAGACAAGGATGCAAAAGAAGCGGGTACACCGGAGACAGAGAAGTCGGAGAAGAAGAAGAAGAAGAAGAAAGACAAGGAGTCCGGAAATGATACTCAAAATGGCGAAGCAGATGGGCATGTTGATGGGGGGAGTGAGAAGAAAAAGAAGAACAAAGAAGAAGCCAGACGAATAAGAAAGATGCTGTTCGATTGTTCTTACCAAAACTTCCTTGCTGCTGCTGCTGCTATTCCCTTCTGGATTTCATGTCGATCTTTCCATCTTTTGCAAGCCCCTAATGATGCTCGATTATCAAGAACCCCTCAAGGCTGGAAGCAGGAAATTGGCTAACATCTATGAACATATTGGGCCTGAGAGGGATCCATTGGGCTTTTGTTTTGGGCCTAAGAGTGATCCCATTTGCTTTTAAACGCTATTGCATTCTCATAAATTAATGTACGTGTATCATGAATGTAGCTTAGCTTCCAACAAATATTAGTCTAAATTGACTTGGGTCATTTTCTTTTTAAAGTCAACTCAACCATCGAGCTTAAATGTATGGAAGTCGAACATTTGTC

Coding sequence (CDS)

ATGTCGGATGTTGAGATTTCTCGTTCGGAGAAGAAGAAGAAGAAGCATCGGAGCAAGGATGAAGAAGTTTCACCAGTGGTAGCTTCCGACGAGCAGCCGCTCAAGGACGTTGCCGACTTTTTGATCAAGCCGCAAAGTTTTACTCCTCCGGTGGATACATCTCAATGGCCTATTCTTCTGAAGAACTACGACCGTCTCAATGTACGTACTGGACACTACACTCCTTTACCGTCTGGTTTCTCTCCTCTGAAGCGGCCTCTGATTGACTACATCAGGTATGGTATTCTCAACCTTGATAAACCGGCGAATCCTTCGTCGCACGAGGTTGTGGCTTGGATTAAACGGATTCTTCGGGTTGATAAAACGGGTCATAGTGGTACACTGGATCCGAAGGTTACTGGTAATTTGATTGTGTGCATTGATCGAGCCACGCGGCTCGTGAAGTCGCAACAGGGTGCTGGTAAGGAGTATGTGTGTGTTGCTCGTTTGCATTCTGCTGTGCCCGATGTTGCTAAGGTGGCTCGGGCTCTGGAGACGCTCACTGGAGCTGTGTTTCAGAGGCCGCCTTTGATATCGGCTGTGAAAAGACAGCTTAGGATTAGGACTATATATGAGAGTAAGCTTCTTGAATATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAGGCTGGAACTTACGTTAGAACGTTGTGTGTGCACTTGGGTCTCATTCTTGGTGTTGGAGGGCATATGCAAGAACTTAGGAGGGTGAGGTCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTTCAAGGATGAGAGTTACCTGAGGAGGGTAATTATGCCTCTTGAGGTGGTTTTGACAAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCTAAGTTAATGATTCCAGGGCTGTTGAGATTTGAGAATGATATTGAAGTTGGGGAAGAAGTTGTACTTATGACCACCAAGGGTGAAGCCATTGCTCTTGGTATTGCTGAGATGACCACTTCTGTGATGGCAACTTGTGATCATGGCATTGTTGCAAAGATCAAAAGGGTTGTGATGGATCGTGATACTTACCCAAGGAAATGGGGACTAGGTCCAAGGGCATCAATGAAGAAGAAGCTTATTGGAGAAGGGAAGTTGGATAAGCATGGAAAACCAAATGAGAACACTCCTCAAGAGTGGCTGAGGAATTTGGTTTTGCCTACTGGTGGGGATTCATTGGTTGCAAGCGTGTTCGCTTCCGATACTGCCACTCCAAAGCAGAACGTTGCAGCTGATGAGGAAAAAGATGGTGTAGGGCAGAAGCGGAAACACGACGAGGAAACAGAAGCTGCAGCTCCTGCTAAGAAACTGAAAGGTGAAAAGGCCGAGGAAGCTGAAGAAGTTGAAGAATCCGGGAAGAAAGAGAAGAAAAAGAAGAAGAAAGATAAAGAGAAGGGAGGCATAGAAGCTTCAGATGATGAAAAAGCTGAGAAACCAGAGAAGAAAAAGAAGAAGAAAGACAAGGATGCAAAAGAAGCGGGTACACCGGAGACAGAGAAGTCGGAGAAGAAGAAGAAGAAGAAGAAAGACAAGGAGTCCGGAAATGATACTCAAAATGGCGAAGCAGATGGGCATGTTGATGGGGGGAGTGAGAAGAAAAAGAAGAACAAAGAAGAAGCCAGACGAATAAGAAAGATGCTGTTCGATTGTTCTTACCAAAACTTCCTTGCTGCTGCTGCTGCTATTCCCTTCTGGATTTCATGTCGATCTTTCCATCTTTTGCAAGCCCCTAATGATGCTCGATTATCAAGAACCCCTCAAGGCTGGAAGCAGGAAATTGGCTAA

Protein sequence

MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEEAEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKSEKKKKKKKDKESGNDTQNGEADGHVDGGSEKKKKNKEEARRIRKMLFDCSYQNFLAAAAAIPFWISCRSFHLLQAPNDARLSRTPQGWKQEIG

Homology

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BLAST of CmaCh06G003030 vs. ExPASy Swiss-Prot
Match: Q9LD90 (H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF5 PE=1 SV=1)

HSP 1 Score: 776.5 bits (2004), Expect = 2.2e-223
Identity = 424/581 (72.98%), Postives = 481/581 (82.79%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           M++V+IS S+KKK+     D               D  D++IKPQSFTP +DTSQWPILL
Sbjct: 1   MAEVDISHSKKKKQDKTEND-------------AADTGDYMIKPQSFTPAIDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTP+ +G SPLKRPL +YIRYG++NLDKPANPSSHEVVAWIKRILRV+
Sbjct: 61  KNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALE+L
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAD+HLVVFW+SCEAGTY+RT+CVHLGL+
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLL 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGE +NMVTMHDVMDAQ+VYDN +DESYLRRVIMPLE++LTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDI+VG EVVLMTTKGEAIA+GIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLI +GKLDKHGKPNE TP EW RN+
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNV 420

Query: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQ--KRKHDEETEAAAPAKKLKGEKA 480
           VLPTGGD+++A       A   + + AD E    G+  KRKHD+ +++ AP    K +  
Sbjct: 421 VLPTGGDAIIAG-----AAAAPEEIKADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTK 480

Query: 481 E-EAEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKS 540
           E E EE EE  K  KKKKKKDKE+   E +  EK EK +KKK KK++  +E  +P++EK 
Sbjct: 481 EVEGEEAEEKVKSSKKKKKKDKEEEKEEEAGSEKKEK-KKKKDKKEEVIEEVASPKSEK- 540

Query: 541 EKKKKKKKDKESGNDTQNGEADGHVDGGSEKKKKNKEEARR 579
            KKKKK KD E+  D ++  A       SEKKKK K++ ++
Sbjct: 541 -KKKKKSKDTEAAVDAEDESAAEK----SEKKKKKKDKKKK 556

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BLAST of CmaCh06G003030 vs. ExPASy Swiss-Prot
Match: P40615 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 610.9 bits (1574), Expect = 1.6e-173
Identity = 326/528 (61.74%), Postives = 411/528 (77.84%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           M+D E + +  KK K   K +E  P+  +D   ++   DFLIKP+S    +DTSQWP+LL
Sbjct: 1   MADAEAAMTFPKKHK---KKKERKPLPEADVAEIQHAEDFLIKPESKAAQLDTSQWPLLL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KN+DRLNVRT HYTP+P G +PLKR + +Y+R G +NLDKP+NPSSHEVVAWI+RILRV+
Sbjct: 61  KNFDRLNVRTTHYTPIPCGSNPLKREIGEYVRTGFINLDKPSNPSSHEVVAWIRRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV V RLH+A+   A+++RALETL
Sbjct: 121 KTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGVVRLHNAIEGTAQLSRALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGA+FQRPPLI+AVKRQLR+RTIYES+++EYD ++ L VFW+SCEAGTY+RTLCVHLGL+
Sbjct: 181 TGALFQRPPLIAAVKRQLRVRTIYESRVVEYDPERRLGVFWVSCEAGTYIRTLCVHLGLL 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGG MQELRRVRSG++GE+D+MVTMHDV+DAQ++YD+ +DESYLRRV+ PLE +LTS+
Sbjct: 241 LGVGGQMQELRRVRSGVVGERDHMVTMHDVLDAQYLYDHHRDESYLRRVVFPLEKLLTSH 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLV+KDSAVNAICYGAK+M+PGLLR+E+ IEV +EVV++TTKGEA+ + IA MTT+V++
Sbjct: 301 KRLVMKDSAVNAICYGAKIMLPGLLRYEDGIEVNQEVVVITTKGEAVCVAIALMTTAVIS 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHG+VAKIKRV+M+RDTYPRKWGLGP+AS KK+LI +G LDKHG+P + TP  W R+ 
Sbjct: 361 TCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKQLIKQGLLDKHGRPTDGTPASWTRDY 420

Query: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480
           V     DS   +  A   ATP   V AD        KRK D +++            A+E
Sbjct: 421 V--DYSDSSKKATAAE--ATPGPGVTADAASI---VKRKRDSDSD------------ADE 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKE 529
           A        K++KKKKK+K  GG EA++D   +   KKKKKK + A+E
Sbjct: 481 ATPTTTPRVKKEKKKKKEKADGGEEAAEDGDGDATRKKKKKKARAAEE 506

[Close]

BLAST of CmaCh06G003030 vs. ExPASy Swiss-Prot
Match: Q9ESX5 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 607.8 bits (1566), Expect = 1.4e-172
Identity = 321/525 (61.14%), Postives = 401/525 (76.38%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           M+D E+    KK KK + +     P+   D   ++   +FLIKP+S    +DTSQWP+LL
Sbjct: 1   MADAEVITFPKKHKKKKDR----KPLQEDDVAEIQHAEEFLIKPESKVAQLDTSQWPLLL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KN+D+LNVRT HYTPLP G +PLKR + DYIR G +NLDKP+NPSSHEVVAWI+RILRV+
Sbjct: 61  KNFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV + RLH+A+    +++RALETL
Sbjct: 121 KTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGA+FQRPPLI+AVKRQLR+RTIYESK++EYD ++ L +FW+SCEAGTY+RTLCVHLGL+
Sbjct: 181 TGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLL 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGG MQELRRVRSG++ EKD+MVTMHDV+DAQW+YDN KDESYLRRV+ PLE +LTS+
Sbjct: 241 LGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSH 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLV+KDSAVNAICYGAK+M+PGLLR+E+ IEV +E+V++TTKGEAI + IA MTT+V++
Sbjct: 301 KRLVMKDSAVNAICYGAKIMLPGLLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVIS 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHGIVAKIKRV+M+RDTYPRKWGLGP+AS KK +I +G LDKHGKP +NTP  W ++ 
Sbjct: 361 TCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKMMIKQGLLDKHGKPTDNTPATWKQDY 420

Query: 421 V--LPTGGDSLVA-SVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEK 480
           +    +G ++LV  +V A   A    NV           KRK D E+E+         ++
Sbjct: 421 IDYSDSGKNTLVTEAVQAPQLAAEAVNVI----------KRKRDSESES---------DE 480

Query: 481 AEEAEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKK 523
                +++E  KK+ KK K   E GG     D    K +KKKK K
Sbjct: 481 TPTVPQLKEKKKKKDKKPKTVLESGGETGDGDNDTTKKKKKKKVK 502

[Close]

BLAST of CmaCh06G003030 vs. ExPASy Swiss-Prot
Match: Q5ZJH9 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE=2 SV=1)

HSP 1 Score: 606.3 bits (1562), Expect = 4.0e-172
Identity = 321/516 (62.21%), Postives = 398/516 (77.13%), Query Frame = 0


Query: 14  KKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHY 73
           KK R KD+   P    D   ++   +FLIKP+S    +DTSQWP+LLKN+D+LNV T HY
Sbjct: 10  KKRRKKDKRSLP--DEDVADIQHTEEFLIKPESRVAQLDTSQWPLLLKNFDKLNVLTTHY 69

Query: 74  TPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVT 133
           TPLPSG +PLKR + DY+R G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVT
Sbjct: 70  TPLPSGANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVT 129

Query: 134 GNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETLTGAVFQRPPLISA 193
           G LIVCI+RATRLVKSQQ AGKEYV + RLH+A+   A++ARA+ETLTGA+FQRPPLI+A
Sbjct: 130 GCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLTGALFQRPPLIAA 189

Query: 194 VKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRV 253
           VKRQLR+RTIYESKL+EYD ++ L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRV
Sbjct: 190 VKRQLRVRTIYESKLVEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRV 249

Query: 254 RSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAI 313
           RSGILGE DNMVTMHDV+DAQW YDN KD+SYLRRVI+PLE +LTS+KRLV+KDSAVNAI
Sbjct: 250 RSGILGEMDNMVTMHDVLDAQWQYDNNKDDSYLRRVILPLEKLLTSHKRLVMKDSAVNAI 309

Query: 314 CYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGIVAKIKRV 373
           CYGAK+M+PG+LR+E+ IE+ +E+V++TTKGEAI L IA MTT+V++TCDHG+VAKIKRV
Sbjct: 310 CYGAKIMLPGVLRYEDGIELKQEIVVITTKGEAICLAIALMTTAVISTCDHGVVAKIKRV 369

Query: 374 VMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASV 433
           +M+RDTYPRKWGLGP+AS KK +I +G LDKHGKPNE TP  W +           V   
Sbjct: 370 IMERDTYPRKWGLGPKASQKKMMIQKGLLDKHGKPNECTPDSWKK---------EYVDYR 429

Query: 434 FASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEEAEEVEESGKKEKK 493
            +S     K   A  E +    +KR+ + E EA +P         EE  + E+  KK++K
Sbjct: 430 ESSKKEAAKVPQAVSEVERAPKRKRESESENEAVSPPPSPATPPPEELSKKEKKKKKKEK 489

Query: 494 KKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEA 530
           K K+  E G  +     ++   +KKKKKK K+ +E+
Sbjct: 490 KAKEAAESGEEQVEVISESSAKKKKKKKKQKEVEES 514

[Close]

BLAST of CmaCh06G003030 vs. ExPASy Swiss-Prot
Match: Q54T81 (Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=nola4 PE=1 SV=1)

HSP 1 Score: 600.5 bits (1547), Expect = 2.2e-170
Identity = 327/565 (57.88%), Postives = 419/565 (74.16%), Query Frame = 0


Query: 14  KKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHY 73
           KK +SK  E S       Q ++ V    IKP+  TP +DTS+WP+LLKNYD+L+VRTGHY
Sbjct: 5   KKSKSKSSEKS------TQEVEQV----IKPEK-TPILDTSKWPLLLKNYDQLSVRTGHY 64

Query: 74  TPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVT 133
           TP+P+G SPLKRP+ +Y++YGI+NLDKP+NPSSHEVVAWI+ ILRV KTGHSGTLDPKVT
Sbjct: 65  TPIPNGHSPLKRPIKEYVKYGIINLDKPSNPSSHEVVAWIRTILRVTKTGHSGTLDPKVT 124

Query: 134 GNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETLTGAVFQRPPLISA 193
           G LIVCI+RATRLVKSQQGAGKEY+ + RLH A+    ++++A++TLTGA+FQRPP  SA
Sbjct: 125 GCLIVCIERATRLVKSQQGAGKEYIGIVRLHGAIEGTTELSKAVDTLTGALFQRPPQKSA 184

Query: 194 VKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRV 253
           VK++LR+RTI+ SKLLE+D +++L + W+ CEAGTY+RTLCVH+GL++GVGGHMQELRRV
Sbjct: 185 VKKRLRVRTIHNSKLLEFDPERNLGLIWVDCEAGTYIRTLCVHIGLLMGVGGHMQELRRV 244

Query: 254 RSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAI 313
           RSGI+ EK   VTMHDV DAQ+ YDN KDESYLRRVI PLE +LT+YKR+VVKDSA+NAI
Sbjct: 245 RSGIMSEKKGQVTMHDVKDAQYEYDNSKDESYLRRVIQPLEAILTNYKRIVVKDSAINAI 304

Query: 314 CYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGIVAKIKRV 373
           CYGAKLMIPGLLR+E DIE  EEVVL+TTKGEAIA+GIA+MTT+ MATCDHG+VA IKRV
Sbjct: 305 CYGAKLMIPGLLRYEQDIESNEEVVLITTKGEAIAIGIAQMTTASMATCDHGVVATIKRV 364

Query: 374 VMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASV 433
           +MDRD YP +WGLGP+A +KK++I +GKLDK GKPNE TP +W       TG       V
Sbjct: 365 IMDRDVYPVRWGLGPKAKVKKEMIKDGKLDKFGKPNEKTPSDWTNTYTYYTG------QV 424

Query: 434 FASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEEAEEVEESGKKEKK 493
             + T +P +++  D  K               A+ A K + E +E+ + V +  KK+KK
Sbjct: 425 ATTTTTSPVESMNVDTPKKA------------TASVAVKAEVESSEDEKPVPKKEKKDKK 484

Query: 494 KKKKD------KEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKSEKKKKKKKDK 553
           +KKKD      +E+   +    EK EK EKK+KK  KD  +  + + EK +KK+KK  DK
Sbjct: 485 EKKKDSSDDESEEEKSSKKDKKEKKEKKEKKEKKSSKDDSDDESSKKEKKDKKRKKSSDK 540

Query: 554 ESGNDTQNGEADGHVDGGSEKKKKN 573
           +S ++ ++ +     D   +KK KN
Sbjct: 545 DSDSEKESSDKKDKKDKKEKKKSKN 540

[Close]

BLAST of CmaCh06G003030 vs. ExPASy TrEMBL
Match: A0A6J1I1U9 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111470135 PE=3 SV=1)

HSP 1 Score: 1105.1 bits (2857), Expect = 0.0e+00
Identity = 582/582 (100.00%), Postives = 582/582 (100.00%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480
           VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKSEKK 540
           AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKSEKK
Sbjct: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKSEKK 540

Query: 541 KKKKKDKESGNDTQNGEADGHVDGGSEKKKKNKEEARRIRKM 583
           KKKKKDKESGNDTQNGEADGHVDGGSEKKKKNKEEARRIRKM
Sbjct: 541 KKKKKDKESGNDTQNGEADGHVDGGSEKKKKNKEEARRIRKM 582

[Close]

BLAST of CmaCh06G003030 vs. ExPASy TrEMBL
Match: A0A6J1FP65 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111446978 PE=3 SV=1)

HSP 1 Score: 1072.4 bits (2772), Expect = 7.0e-310
Identity = 569/581 (97.93%), Postives = 573/581 (98.62%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MSDVEISRSEKKKKKHRSKDEEVSPVV SDEQPLKDVADFLIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480
           VLPTGGDSLVASVFASDTATPKQ+VAADEEKDGVG+KRKHDEETEAAAPAKKLKGEK EE
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGVGRKRKHDEETEAAAPAKKLKGEKVEE 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAK-EAGTPETEKSEK 540
           AEE+EESGKKEKKKKKKDKEKGGIEASDDEKAEK EKKKKKKDKDAK EAGTPETEKSEK
Sbjct: 481 AEEIEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKDKDAKEEAGTPETEKSEK 540

Query: 541 KKKKKKDKESGNDTQNGEADGHVDGGSE----KKKKNKEEA 577
           KKKKKKDKESGNDTQNGEA+GHVDGGSE    KKKKNKEEA
Sbjct: 541 KKKKKKDKESGNDTQNGEAEGHVDGGSEKKKKKKKKNKEEA 581

[Close]

BLAST of CmaCh06G003030 vs. ExPASy TrEMBL
Match: A0A6J1CVU2 (H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC111015035 PE=3 SV=1)

HSP 1 Score: 973.4 bits (2515), Expect = 4.5e-280
Identity = 520/581 (89.50%), Postives = 542/581 (93.29%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MS+VEISRSEKKKKKHRSKDE+VSP V SDEQP KD ADF+IKPQSFTPPVDTSQWPILL
Sbjct: 1   MSEVEISRSEKKKKKHRSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSG+SPLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHS+VPDVAKV+RALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+VMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480
           VLPTGGDSLVAS FA+D A   +    + EKDG G+KRK DE+ E AAP KKLK EKAEE
Sbjct: 421 VLPTGGDSLVASHFAADAADEGKQ---ETEKDGGGRKRKLDEDME-AAPTKKLKTEKAEE 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKSEKK 540
           AEEV+E GKKEKKKKKKDKEKG +E +D+E  EK EKKKKKKDK+AKEAGTPETEKSE K
Sbjct: 481 AEEVDEVGKKEKKKKKKDKEKGNVEPADEENVEKSEKKKKKKDKEAKEAGTPETEKSE-K 540

Query: 541 KKKKKDKESGND-------TQNGEADGHVDGGSEKKKKNKE 575
           KKKKKDKESGND        QNGEADGHVDG  +KKKK K+
Sbjct: 541 KKKKKDKESGNDHSQSPAGIQNGEADGHVDGSEKKKKKKKK 576

[Close]

BLAST of CmaCh06G003030 vs. ExPASy TrEMBL
Match: A0A6J1F3Q2 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111441884 PE=3 SV=1)

HSP 1 Score: 969.1 bits (2504), Expect = 8.6e-279
Identity = 520/580 (89.66%), Postives = 539/580 (92.93%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MS VEISRSEKKKKKHRSKD+EVSP V SDEQP KDVADF+IKPQSFTPPVDTSQWPILL
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPL DYIRYGILNLDKPANPSSHEVVAWIKRILRV+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHS+VPDV+KVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNL
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480
           VLPTGGDSLVASVFASD+AT  +    + EKDG G+KRK DEETE AAPAKKLK EK E+
Sbjct: 421 VLPTGGDSLVASVFASDSATVDEG-KQETEKDGGGRKRKLDEETE-AAPAKKLKAEKTED 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKSEKK 540
           AEEVEE GKKEKKKKKKDKEKG  E SD+E   + EKKKKKKDK+ KEAGTPE  +  +K
Sbjct: 481 AEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTPEETQKSEK 540

Query: 541 KKKKKDKESG-NDTQNGEADGHVDGG---SEKKKKNKEEA 577
           KKKKKDKESG  D QNGEAD HVDG     +KKKKNKE+A
Sbjct: 541 KKKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDA 578

[Close]

BLAST of CmaCh06G003030 vs. ExPASy TrEMBL
Match: A0A6J1J6M3 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111481852 PE=3 SV=1)

HSP 1 Score: 958.0 bits (2475), Expect = 2.0e-275
Identity = 518/581 (89.16%), Postives = 539/581 (92.77%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MS VEISRSEKKKKKHRSKD+EVSP V SDEQP KDVADF+IKPQSFTP VDTSQWPILL
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPSVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPL DYIRYGILNLDKPANPSSHEVVAWIKRILRV+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHS+VPDV+KVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNL
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480
           VLPTGGDSLVASVFA+D+AT  +    + EKDG G+KRK DEETE AAPAKKLK EK E+
Sbjct: 421 VLPTGGDSLVASVFATDSATVDEG-KQETEKDGGGRKRKLDEETE-AAPAKKLKAEKTED 480

Query: 481 AEEVEESGKKE-KKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKSEK 540
           AEEVEE GKKE KKKKKKDKEKG  E SD+E  E+ E KKKKKDK+ KEAGTPE ++  +
Sbjct: 481 AEEVEEGGKKEKKKKKKKDKEKGSGEPSDEENTEQSE-KKKKKDKEGKEAGTPEEKQKSE 540

Query: 541 KKKKKKDKESG-NDTQNGEADGHVDGG---SEKKKKNKEEA 577
           KKKKKKDKESG  D QNGEAD HVDG     +KKKKNKE+A
Sbjct: 541 KKKKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDA 578

[Close]

BLAST of CmaCh06G003030 vs. NCBI nr
Match: XP_022971402.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima])

HSP 1 Score: 1105.1 bits (2857), Expect = 0.0e+00
Identity = 582/582 (100.00%), Postives = 582/582 (100.00%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480
           VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKSEKK 540
           AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKSEKK
Sbjct: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKSEKK 540

Query: 541 KKKKKDKESGNDTQNGEADGHVDGGSEKKKKNKEEARRIRKM 583
           KKKKKDKESGNDTQNGEADGHVDGGSEKKKKNKEEARRIRKM
Sbjct: 541 KKKKKDKESGNDTQNGEADGHVDGGSEKKKKNKEEARRIRKM 582

[Close]

BLAST of CmaCh06G003030 vs. NCBI nr
Match: XP_022941699.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata] >KAG6596411.1 H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1072.4 bits (2772), Expect = 1.5e-309
Identity = 569/581 (97.93%), Postives = 573/581 (98.62%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MSDVEISRSEKKKKKHRSKDEEVSPVV SDEQPLKDVADFLIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480
           VLPTGGDSLVASVFASDTATPKQ+VAADEEKDGVG+KRKHDEETEAAAPAKKLKGEK EE
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGVGRKRKHDEETEAAAPAKKLKGEKVEE 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAK-EAGTPETEKSEK 540
           AEE+EESGKKEKKKKKKDKEKGGIEASDDEKAEK EKKKKKKDKDAK EAGTPETEKSEK
Sbjct: 481 AEEIEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKDKDAKEEAGTPETEKSEK 540

Query: 541 KKKKKKDKESGNDTQNGEADGHVDGGSE----KKKKNKEEA 577
           KKKKKKDKESGNDTQNGEA+GHVDGGSE    KKKKNKEEA
Sbjct: 541 KKKKKKDKESGNDTQNGEAEGHVDGGSEKKKKKKKKNKEEA 581

[Close]

BLAST of CmaCh06G003030 vs. NCBI nr
Match: KAG7027955.1 (H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1070.8 bits (2768), Expect = 4.4e-309
Identity = 568/581 (97.76%), Postives = 572/581 (98.45%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MSDVEISRSEKKKKKHRSKDEEVSPVV SDEQPLKDVADFLIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480
           VLPTGGDSLVASVFASDT TPKQ+VAADEEKDGVG+KRKHDEETEAAAPAKKLKGEK EE
Sbjct: 421 VLPTGGDSLVASVFASDTTTPKQSVAADEEKDGVGRKRKHDEETEAAAPAKKLKGEKVEE 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAK-EAGTPETEKSEK 540
           AEE+EESGKKEKKKKKKDKEKGGIEASDDEKAEK EKKKKKKDKDAK EAGTPETEKSEK
Sbjct: 481 AEEIEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKDKDAKEEAGTPETEKSEK 540

Query: 541 KKKKKKDKESGNDTQNGEADGHVDGGSE----KKKKNKEEA 577
           KKKKKKDKESGNDTQNGEA+GHVDGGSE    KKKKNKEEA
Sbjct: 541 KKKKKKDKESGNDTQNGEAEGHVDGGSEKKKKKKKKNKEEA 581

[Close]

BLAST of CmaCh06G003030 vs. NCBI nr
Match: XP_023539854.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1057.7 bits (2734), Expect = 3.8e-305
Identity = 565/581 (97.25%), Postives = 569/581 (97.93%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MSDVEISRSEKKKKKHRSKDEEVSPVV SDEQPLKDVADFLIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480
           VLPTGGDSLVASVFASDTATPKQ+VAADEEKDG+G+KRKHDEE EAAAPAKKLKGEK EE
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEKVEE 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAK-EAGTPETEKSEK 540
           AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEK EKKKKKK+KDAK EAGTPETEKSE 
Sbjct: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEAGTPETEKSE- 540

Query: 541 KKKKKKDKESGNDTQNGEADGHVDGGSE----KKKKNKEEA 577
           KKKKKKDKESGNDTQNGEAD  VDGGSE    KKKKNKEEA
Sbjct: 541 KKKKKKDKESGNDTQNGEADDDVDGGSEKKKKKKKKNKEEA 580

[Close]

BLAST of CmaCh06G003030 vs. NCBI nr
Match: XP_022145634.1 (H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia])

HSP 1 Score: 973.4 bits (2515), Expect = 9.4e-280
Identity = 520/581 (89.50%), Postives = 542/581 (93.29%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MS+VEISRSEKKKKKHRSKDE+VSP V SDEQP KD ADF+IKPQSFTPPVDTSQWPILL
Sbjct: 1   MSEVEISRSEKKKKKHRSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSG+SPLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHS+VPDVAKV+RALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+VMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480
           VLPTGGDSLVAS FA+D A   +    + EKDG G+KRK DE+ E AAP KKLK EKAEE
Sbjct: 421 VLPTGGDSLVASHFAADAADEGKQ---ETEKDGGGRKRKLDEDME-AAPTKKLKTEKAEE 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKSEKK 540
           AEEV+E GKKEKKKKKKDKEKG +E +D+E  EK EKKKKKKDK+AKEAGTPETEKSE K
Sbjct: 481 AEEVDEVGKKEKKKKKKDKEKGNVEPADEENVEKSEKKKKKKDKEAKEAGTPETEKSE-K 540

Query: 541 KKKKKDKESGND-------TQNGEADGHVDGGSEKKKKNKE 575
           KKKKKDKESGND        QNGEADGHVDG  +KKKK K+
Sbjct: 541 KKKKKDKESGNDHSQSPAGIQNGEADGHVDGSEKKKKKKKK 576

[Close]

BLAST of CmaCh06G003030 vs. TAIR 10
Match: AT3G57150.1 (homologue of NAP57 )

HSP 1 Score: 776.5 bits (2004), Expect = 1.6e-224
Identity = 424/581 (72.98%), Postives = 481/581 (82.79%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           M++V+IS S+KKK+     D               D  D++IKPQSFTP +DTSQWPILL
Sbjct: 1   MAEVDISHSKKKKQDKTEND-------------AADTGDYMIKPQSFTPAIDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTP+ +G SPLKRPL +YIRYG++NLDKPANPSSHEVVAWIKRILRV+
Sbjct: 61  KNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALE+L
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAD+HLVVFW+SCEAGTY+RT+CVHLGL+
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLL 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGE +NMVTMHDVMDAQ+VYDN +DESYLRRVIMPLE++LTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDI+VG EVVLMTTKGEAIA+GIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLI +GKLDKHGKPNE TP EW RN+
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNV 420

Query: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQ--KRKHDEETEAAAPAKKLKGEKA 480
           VLPTGGD+++A       A   + + AD E    G+  KRKHD+ +++ AP    K +  
Sbjct: 421 VLPTGGDAIIAG-----AAAAPEEIKADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTK 480

Query: 481 E-EAEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKS 540
           E E EE EE  K  KKKKKKDKE+   E +  EK EK +KKK KK++  +E  +P++EK 
Sbjct: 481 EVEGEEAEEKVKSSKKKKKKDKEEEKEEEAGSEKKEK-KKKKDKKEEVIEEVASPKSEK- 540

Query: 541 EKKKKKKKDKESGNDTQNGEADGHVDGGSEKKKKNKEEARR 579
            KKKKK KD E+  D ++  A       SEKKKK K++ ++
Sbjct: 541 -KKKKKSKDTEAAVDAEDESAAEK----SEKKKKKKDKKKK 556

[Close]

BLAST of CmaCh06G003030 vs. TAIR 10
Match: AT5G14460.1 (Pseudouridine synthase family protein )

HSP 1 Score: 96.3 bits (238), Expect = 9.4e-20
Identity = 64/202 (31.68%), Postives = 100/202 (49.50%), Query Frame = 0


Query: 95  ILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 154
           +L ++KP   +S  V   ++R+++V K GH+GTLDP  TG LIVC+ +AT++V   QG  
Sbjct: 323 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMI 382

Query: 155 KEYVCVARLHSAV-------PDVAK----------VARALETLTGAVFQRPPLISAVK-- 214
           K Y  V RL  A        P + +          + +AL +  G ++Q PP+ SA+K  
Sbjct: 383 KGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVG 442

Query: 215 ------RQLRIRTIYES----KLLEYDADKHL-----VVFWISCEAGTYVRTLCVHLGLI 263
                 +  R  T+  S     + ++D ++ L     ++F + C  GTY+R+LC  L   
Sbjct: 443 GEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKA 502

The following BLAST results are available for this feature:

BLAST of CmaCh06G003030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD90	2.2e-223	72.98	H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF...	[more]
P40615	1.6e-173	61.74	H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dk...	[more]
Q9ESX5	1.4e-172	61.14	H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE...	[more]
Q5ZJH9	4.0e-172	62.21	H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE...	[more]
Q54T81	2.2e-170	57.88	Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum O...	[more]

BLAST of CmaCh06G003030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I1U9	0.0e+00	100.00	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FP65	7.0e-310	97.93	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1CVU2	4.5e-280	89.50	H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1F3Q2	8.6e-279	89.66	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J6M3	2.0e-275	89.16	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of CmaCh06G003030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971402.1	0.0e+00	100.00	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima]	[more]
XP_022941699.1	1.5e-309	97.93	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata] >KAG6596411....	[more]
KAG7027955.1	4.4e-309	97.76	H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp...	[more]
XP_023539854.1	3.8e-305	97.25	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022145634.1	9.4e-280	89.50	H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia]	[more]

BLAST of CmaCh06G003030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57150.1	1.6e-224	72.98	homologue of NAP57	[more]
AT5G14460.1	9.4e-20	31.68	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 470..490
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 86..292 e-value: 7.7E-182 score: 605.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 439..575
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 561..575
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 444..554
None	No IPR available	PANTHER	PTHR23127:SF3	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4	coord: 8..576
None	No IPR available	PROSITE	PS50890	PUA	coord: 300..375 score: 19.235785
None	No IPR available	CDD	cd02572	PseudoU_synth_hDyskerin	coord: 92..274 e-value: 9.31006E-135 score: 389.699
IPR012960	Dyskerin-like	SMART	SM01136	DKCLD_2	coord: 52..110 e-value: 1.3E-31 score: 121.1
IPR012960	Dyskerin-like	PFAM	PF08068	DKCLD	coord: 53..110 e-value: 3.4E-30 score: 103.9
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 301..375 e-value: 9.5E-25 score: 98.2
IPR002478	PUA domain	PFAM	PF01472	PUA	coord: 301..373 e-value: 6.4E-22 score: 77.3
IPR002501	Pseudouridine synthase II, N-terminal	PFAM	PF01509	TruB_N	coord: 114..230 e-value: 3.3E-19 score: 69.7
IPR004802	tRNA pseudouridine synthase B family	TIGRFAM	TIGR00425	TIGR00425	coord: 60..385 e-value: 2.0E-160 score: 531.1
IPR004802	tRNA pseudouridine synthase B family	PANTHER	PTHR23127	CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5	coord: 8..576
IPR004521	Uncharacterised domain CHP00451	TIGRFAM	TIGR00451	TIGR00451	coord: 297..372 e-value: 1.3E-8 score: 33.0
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 53..384 e-value: 7.7E-182 score: 605.6
IPR032819	tRNA pseudouridylate synthase B, C-terminal	PFAM	PF16198	TruB_C_2	coord: 231..297 e-value: 1.4E-22 score: 79.6
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 53..298
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 300..381

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G003030.1	CmaCh06G003030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000495	box H/ACA RNA 3'-end processing
biological_process	GO:1990481	mRNA pseudouridine synthesis
biological_process	GO:0031118	rRNA pseudouridine synthesis
biological_process	GO:0031120	snRNA pseudouridine synthesis
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
biological_process	GO:0006396	RNA processing
cellular_component	GO:0031429	box H/ACA snoRNP complex
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding