CmaCh06G002720 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G002720
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Dynein light chain
Location	Cma_Chr06: 1334341 .. 1335772 (-)
RNA-Seq Expression	CmaCh06G002720
Synteny	CmaCh06G002720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAGGGCAAAGGTGTGGTCCGCGAAACAGACATGGCAGAGGTGATCCAGGGCCATGGCCTTGCCTTAGCTTATAAAGCACTTGATCAACACGAAGTTTCCGACTCTCAATCCATTGCACGTTTCATCAAACAGGTTCATATATTGCCTTAAATTTCACAACTCAACTCCTTTCCTTGCTTCATCATTCACAGTAACCACGTCAATAATTAAAATATGCTGTGTGTGGATGATGTTAATGAACTGCTAAATGCTCTGCTATGACTTTGAGGTTTCGATAATTAGAGGTTGGACGAAGCTTATGGGCCGGCATGGCAGTGTGTGGTGGGCAAAGCGTTTGGAGGCTGCATTACCCATTTATGTGGTACCTTCATCTTCTTCCATGTGGATACCATGGAGTTCCTCATCTTTAAAGATGCAACAGACTGCTTCAAAACCGTTCAACACACCCTTGGAGGACTTCCTCACAAACCTTAAATCTTTACACAAACATTTCTGCTACCACTTCTGTATAACTTTACCTATAACAACAGTTGAATAAAAAAATCATCTCCATCTTCATACAACACTAAAAACCAGAACCAAAACAGCATACGCACCTTGCAGGGGAGCTCATAATCTGCTTGTTAAACCCAACATTGCCCACAAGGAAGAGGTAATCTGCAACCCGAGGGCTAGACAAGAACAATATCTAAACCTCAGGATGCAGATTACCCTATCCTTGCCCAATAAATTCCAAGAGACCAAAACAAGGGGCAGAGAGTGGGTTGGGGAAGAAGGAGATTTGGTTTGAGAAAGAGATGATGTTCATATGCTAAATTCATGGGTATTTATAGCCTTAAAAATATATATATATATATATATATTCCAAAGCATATAAAAATTAAAATGGAAATTAATATGTTTTACAAAAAGCGTGCATAAAGGAGAAACACATGATAAGGTGCTGCAATACAATTATGAGTTTGTTCTGTTCTTCCCTTGCCAATTGCAAGATGGAACAAGCTTTCCTTCCCTTTTTTTTTGGGACACAGATTGTTCTTTCTTTGACCACTTTTTTTCCCTCACATTTTACCTTATTCATGAAAAAAAAAACAAATTATTCCACTCGGGTTCCAAGCCATTACAGTGTCCCACACATTGTGTGATGTCTCATATTGGTTGGGGAGGAGAATAAACCACTCTTTACAAGGGTGTGGAAACCTTCCTTGAGATTTTAAAGCCTTGAGGGGAAGCCCAAAAGGGAAAGCCTAAAGAGGACAATATCTAGCAGTGGATGATAAACATTAGGTTCCCACCGTCTTCATTATAAAGAGACCAAAATAAAGGCCCAATACATGGTCCCGCTCATTCCACTCTGTTTCTGTCAGGAAAACAGGGTAAGATCTCAATTCCATTCAGCTCAAGCTCCGAGAAGGAAGCTAATTAG

mRNA sequence

ATGTTGGAGGGCAAAGGTGTGGTCCGCGAAACAGACATGGCAGAGGTGATCCAGGGCCATGGCCTTGCCTTAGCTTATAAAGCACTTGATCAACACGAAGTTTCCGACTCTCAATCCATTGCACGTTTCATCAAACAGAGGTTGGACGAAGCTTATGGGCCGGCATGGCAGTGTGTGGTGGGCAAAGCGTTTGGAGGCTGCATTACCCATTTATGTGGTACCTTCATCTTCTTCCATGTGGATACCATGGAGTTCCTCATCTTTAAAGATGCAACAGACTGCTTCAAAACCGGTAAGATCTCAATTCCATTCAGCTCAAGCTCCGAGAAGGAAGCTAATTAG

Coding sequence (CDS)

ATGTTGGAGGGCAAAGGTGTGGTCCGCGAAACAGACATGGCAGAGGTGATCCAGGGCCATGGCCTTGCCTTAGCTTATAAAGCACTTGATCAACACGAAGTTTCCGACTCTCAATCCATTGCACGTTTCATCAAACAGAGGTTGGACGAAGCTTATGGGCCGGCATGGCAGTGTGTGGTGGGCAAAGCGTTTGGAGGCTGCATTACCCATTTATGTGGTACCTTCATCTTCTTCCATGTGGATACCATGGAGTTCCTCATCTTTAAAGATGCAACAGACTGCTTCAAAACCGGTAAGATCTCAATTCCATTCAGCTCAAGCTCCGAGAAGGAAGCTAATTAG

Protein sequence

MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVVGKAFGGCITHLCGTFIFFHVDTMEFLIFKDATDCFKTGKISIPFSSSSEKEAN

Homology

[Close]

BLAST of CmaCh06G002720 vs. ExPASy Swiss-Prot
Match: Q94758 (Dynein light chain OS=Schistosoma mansoni OX=6183 GN=DLC PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.4e-13
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
          M E K V++  DM+E +Q   + +A  A+D+H++   + IA  IK+  D  Y P W C+V
Sbjct: 1  MSERKAVIKNADMSEEMQEDAIHIAAGAIDKHDL--EKDIAANIKKDFDRKYHPTWHCIV 60

Query: 61 GKAFGGCITHLCGTFIFFHVDTMEFLIFK 90
          G+ FG  +TH    FI+F++D   FL+FK
Sbjct: 61 GRHFGSYVTHETHNFIYFYLDDRAFLLFK 87

[Close]

BLAST of CmaCh06G002720 vs. ExPASy Swiss-Prot
Match: Q94748 (Probable dynein light chain OS=Schistosoma mansoni OX=6183 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.8e-12
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
          M E K V++  DM E +Q   +  A  ALD++E+   + +A +IK+  D  Y P W C+V
Sbjct: 1  MGERKAVIKNADMHEDMQETAVHTAAAALDKYEI--EKDVAAYIKKEFDRKYNPNWHCIV 60

Query: 61 GKAFGGCITHLCGTFIFFHVDTMEFLIFK 90
          GK FG  +TH    FI+F++    FL+FK
Sbjct: 61 GKHFGSYVTHETQHFIYFYLQERAFLLFK 87

[Close]

BLAST of CmaCh06G002720 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-11
Identity = 32/89 (35.96%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
          M + K V++  DM+E +Q   +  A +AL+++ +   + IA FIK+  D+ Y P W C+V
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNI--EKDIAAFIKKEFDKKYNPTWHCIV 60

Query: 61 GKAFGGCITHLCGTFIFFHVDTMEFLIFK 90
          G+ FG  +TH    FI+F++  +  L+FK
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of CmaCh06G002720 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-11
Identity = 30/89 (33.71%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
          M++ K V++  DM++ +Q   +  A +AL+++ +   + IA +IK+  D+ Y P W C+V
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GKAFGGCITHLCGTFIFFHVDTMEFLIFK 90
          G+ FG  +TH    FI+F++  +  L+FK
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of CmaCh06G002720 vs. ExPASy Swiss-Prot
Match: Q24117 (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-11
Identity = 31/89 (34.83%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
          M + K V++  DM+E +Q   +  A +AL+++ +   + IA +IK+  D+ Y P W C+V
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GKAFGGCITHLCGTFIFFHVDTMEFLIFK 90
          G+ FG  +TH    FI+F++  +  L+FK
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of CmaCh06G002720 vs. ExPASy TrEMBL
Match: A0A0A0LA26 (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G733350 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.7e-39
Identity = 79/97 (81.44%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
          MLEGK VVRETDM + IQ H L LAYKALDQHEVSD QSIA FIKQR DEAYGPAW CV 
Sbjct: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61 GKAFGGCITHLCGTFIFFHVDTMEFLIFKDATDCFKT 98
          GKAFGGCITHLCG++IFFHVDTMEFL+FKD  DCFK+
Sbjct: 61 GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKS 97

[Close]

BLAST of CmaCh06G002720 vs. ExPASy TrEMBL
Match: A0A1S3B5U2 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103486353 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.4e-38
Identity = 79/97 (81.44%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
          MLEGK VVRETDM + IQ H L LAYKALDQHEVSD QSIA FIKQR DEAYGPAW CV 
Sbjct: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61 GKAFGGCITHLCGTFIFFHVDTMEFLIFKDATDCFKT 98
          GKAFGGCITHLCG+FIFFHVDTMEFL+FKD  DC K+
Sbjct: 61 GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKS 97

[Close]

BLAST of CmaCh06G002720 vs. ExPASy TrEMBL
Match: A0A6J1CWC6 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015000 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.5e-37
Identity = 79/97 (81.44%), Postives = 81/97 (83.51%), Query Frame = 0


Query: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
          MLEGK  VRETDM E IQ H L LAYKALD HEVSD QSIARFIKQR DEAYGPAW CVV
Sbjct: 1  MLEGKAAVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60

Query: 61 GKAFGGCITHLCGTFIFFHVDTMEFLIFKDATDCFKT 98
          GKAFGGCITHLCG+FIFFHVD MEFLIFKD  D  K+
Sbjct: 61 GKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKS 97

[Close]

BLAST of CmaCh06G002720 vs. ExPASy TrEMBL
Match: W9QN85 (Dynein light chain OS=Morus notabilis OX=981085 GN=L484_016957 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.3e-33
Identity = 69/93 (74.19%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
          MLEGK VVRETDM++++Q H + LAYKALD HEVSD QSIA +IKQ+ DEAYGPAW CVV
Sbjct: 1  MLEGKAVVRETDMSQIMQSHVMELAYKALDLHEVSDCQSIAHYIKQKFDEAYGPAWHCVV 60

Query: 61 GKAFGGCITHLCGTFIFFHVDTMEFLIFKDATD 94
          G  FG CITHLCG+FIFFHV+ MEFLIFKD  D
Sbjct: 61 GNDFGSCITHLCGSFIFFHVEMMEFLIFKDGKD 93

[Close]

BLAST of CmaCh06G002720 vs. ExPASy TrEMBL
Match: A0A2P5EZ32 (Dynein light chain OS=Trema orientale OX=63057 GN=TorRG33x02_134280 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.0e-33
Identity = 71/97 (73.20%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
          MLEGK VVRETDM E +Q H + LAYKALD HEVSD QSIA +IKQ+ DE YGPAW CVV
Sbjct: 1  MLEGKAVVRETDMPEAMQSHVMELAYKALDLHEVSDCQSIANYIKQKFDEEYGPAWNCVV 60

Query: 61 GKAFGGCITHLCGTFIFFHVDTMEFLIFKDATDCFKT 98
          GK FG CITHLCG+FIFFHV+ MEFLIFKD  D  +T
Sbjct: 61 GKDFGSCITHLCGSFIFFHVEMMEFLIFKDGKDFNET 97

[Close]

BLAST of CmaCh06G002720 vs. NCBI nr
Match: XP_023540066.1 (dynein light chain-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.1 bits (510), Expect = 5.2e-48
Identity = 95/97 (97.94%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
          MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV
Sbjct: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60

Query: 61 GKAFGGCITHLCGTFIFFHVDTMEFLIFKDATDCFKT 98
          GKAFGGCITH+CGTFIFFHVDTMEFLIFKDATDCFK+
Sbjct: 61 GKAFGGCITHVCGTFIFFHVDTMEFLIFKDATDCFKS 97

[Close]

BLAST of CmaCh06G002720 vs. NCBI nr
Match: KAG7027933.1 (putative receptor protein kinase ZmPK1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.2 bits (500), Expect = 7.6e-47
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1   MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
           MLEGK VVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV
Sbjct: 808 MLEGKAVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 867

Query: 61  GKAFGGCITHLCGTFIFFHVDTMEFLIFKDATDCFKT 98
           GKAFGGCITH+CGTFI FHVDTMEFLIFKDATDCFKT
Sbjct: 868 GKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKT 904

[Close]

BLAST of CmaCh06G002720 vs. NCBI nr
Match: KGN58830.1 (hypothetical protein Csa_001625 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 7.6e-39
Identity = 79/97 (81.44%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
          MLEGK VVRETDM + IQ H L LAYKALDQHEVSD QSIA FIKQR DEAYGPAW CV 
Sbjct: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61 GKAFGGCITHLCGTFIFFHVDTMEFLIFKDATDCFKT 98
          GKAFGGCITHLCG++IFFHVDTMEFL+FKD  DCFK+
Sbjct: 61 GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKS 97

[Close]

BLAST of CmaCh06G002720 vs. NCBI nr
Match: XP_008442502.1 (PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 2.9e-38
Identity = 79/97 (81.44%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
          MLEGK VVRETDM + IQ H L LAYKALDQHEVSD QSIA FIKQR DEAYGPAW CV 
Sbjct: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61 GKAFGGCITHLCGTFIFFHVDTMEFLIFKDATDCFKT 98
          GKAFGGCITHLCG+FIFFHVDTMEFL+FKD  DC K+
Sbjct: 61 GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKS 97

[Close]

BLAST of CmaCh06G002720 vs. NCBI nr
Match: XP_022145583.1 (dynein light chain-like [Momordica charantia])

HSP 1 Score: 163.7 bits (413), Expect = 9.3e-37
Identity = 79/97 (81.44%), Postives = 81/97 (83.51%), Query Frame = 0


Query: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
          MLEGK  VRETDM E IQ H L LAYKALD HEVSD QSIARFIKQR DEAYGPAW CVV
Sbjct: 1  MLEGKAAVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60

Query: 61 GKAFGGCITHLCGTFIFFHVDTMEFLIFKDATDCFKT 98
          GKAFGGCITHLCG+FIFFHVD MEFLIFKD  D  K+
Sbjct: 61 GKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKS 97

[Close]

BLAST of CmaCh06G002720 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 97.8 bits (242), Expect = 5.8e-21
Identity = 50/92 (54.35%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
          MLEGK  V ETDM   +Q   + +A ++LD  +V DS SIA  IK+  DE YG  WQCVV
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GKAFGGCITHLCGTFIFFHVDTMEFLIFKDAT 93
          G  FG   TH  GTFI+FH+ T+ FLIFK AT
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGAT 92

[Close]

BLAST of CmaCh06G002720 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 95.1 bits (235), Expect = 3.8e-20
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
          MLEGK +V ++DM   +Q   +A A +ALD  +V D +SIA  IK+  DE YG  WQCVV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GKAFGGCITHLCGTFIFFHVDTMEFLIFKDAT 93
          G  FG   TH  GTFI+F ++T++FLIFK A+
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGAS 92

[Close]

BLAST of CmaCh06G002720 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 92.0 bits (227), Expect = 3.2e-19
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1  MLEGKGVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 60
          MLEGK V+ +TDM + ++   L+LA KALD  +V++   IARFIK+  D +YG  WQC+V
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GKAFGGCITHLCGTFIFFHVDTMEFLIFK 90
          G  FG  +TH  G FI F V ++  L+FK
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFK 89

[Close]

BLAST of CmaCh06G002720 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 70.9 bits (172), Expect = 7.6e-13
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 12  DMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVVGKAFGGCITHL 71
           DM   +Q H    A   LD  E   S+ +A  +K+  D+ YGPAW C+VG +FG  +TH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  CGTFIFFHVDTMEFLIFK 90
            G FI+F +D +  L+FK
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

[Close]

BLAST of CmaCh06G002720 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 67.8 bits (164), Expect = 6.5e-12
Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 8   VRETDMAEVIQGHGLALAYKALDQHE-VSDSQSIARFIKQRLDEAYGPAWQCVVGKAFGG 67
           VR +DM    Q    +L+ + L+     +D++ +A  +K+  D AYGPAW C+VG +FG 
Sbjct: 38  VRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGS 97

Query: 68  CITHLCGTFIFFHVDTMEFLIFKDATD 94
            +TH  G F++F +D +  L+FK A +
Sbjct: 98  YVTHSTGGFLYFQIDKVYVLLFKTAVE 124

The following BLAST results are available for this feature:

BLAST of CmaCh06G002720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94758	7.4e-13	39.33	Dynein light chain OS=Schistosoma mansoni OX=6183 GN=DLC PE=1 SV=1	[more]
Q94748	4.8e-12	39.33	Probable dynein light chain OS=Schistosoma mansoni OX=6183 PE=3 SV=1	[more]
O96860	1.4e-11	35.96	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]
Q22799	3.1e-11	33.71	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q24117	3.1e-11	34.83	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]

BLAST of CmaCh06G002720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA26	3.7e-39	81.44	Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G733350 PE=3 SV=1	[more]
A0A1S3B5U2	1.4e-38	81.44	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103486353 PE=3 SV=1	[more]
A0A6J1CWC6	4.5e-37	81.44	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015000 PE=3 SV=1	[more]
W9QN85	2.3e-33	74.19	Dynein light chain OS=Morus notabilis OX=981085 GN=L484_016957 PE=3 SV=1	[more]
A0A2P5EZ32	3.0e-33	73.20	Dynein light chain OS=Trema orientale OX=63057 GN=TorRG33x02_134280 PE=3 SV=1	[more]

BLAST of CmaCh06G002720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540066.1	5.2e-48	97.94	dynein light chain-like [Cucurbita pepo subsp. pepo]	[more]
KAG7027933.1	7.6e-47	96.91	putative receptor protein kinase ZmPK1, partial [Cucurbita argyrosperma subsp. a...	[more]
KGN58830.1	7.6e-39	81.44	hypothetical protein Csa_001625 [Cucumis sativus]	[more]
XP_008442502.1	2.9e-38	81.44	PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]	[more]
XP_022145583.1	9.3e-37	81.44	dynein light chain-like [Momordica charantia]	[more]

BLAST of CmaCh06G002720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16120.1	5.8e-21	54.35	Dynein light chain type 1 family protein	[more]
AT1G52240.2	3.8e-20	51.09	RHO guanyl-nucleotide exchange factor 11	[more]
AT4G27360.1	3.2e-19	48.31	Dynein light chain type 1 family protein	[more]
AT5G20110.1	7.6e-13	41.03	Dynein light chain type 1 family protein	[more]
AT1G23220.1	6.5e-12	36.78	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 1.2E-30 score: 117.9
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 7..89 e-value: 2.0E-26 score: 92.2
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..97
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 9.9E-27 score: 94.8
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 2..89
None	No IPR available	PANTHER	PTHR11886:SF85	DYNEIN LIGHT CHAIN	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G002720.1	CmaCh06G002720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding