CmaCh06G002390 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G002390
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Location	Cma_Chr06: 1212536 .. 1217269 (+)
RNA-Seq Expression	CmaCh06G002390
Synteny	CmaCh06G002390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGTTTCGGAGCATGTATTTTCCTGACCATTTTTGTGTTCAATGTCAATTGTACACCCTCACTTTATTTGCGCAAACATGTTGTCACGTCGACCACTCATTTATCTTTTTCTCATAAGGTTCCTCCATCTGTAGCATTGTTGATGTCTTATATAACAGGAAATTTGATGTCGGGATGAATGAAAAGATGGATGGATGGAATCCTATGCCTCCAATTACAGATGGTATTAAATTTTAGTAACTCTGAATTAGTAATAGTTTGATATGAGAAAGTTTCTTGAGAAGGATTATTAACATGAGTTATGATTGGGAACACATTCACCGTTGGGCATTAGACATCTTAATGCGTTGCAATTTGGACATGGATCGATCTTTATGCTTTCCAGCAGCTATACAATCTGAATTGGCTACCACTATAGAGACCACTCCAATTCTTGAGACTGGAGAGGGGTACCCCGAGTACTGGGCCAATTTCTTTGTCGGTTGGAGACTTTAATGCGTTGTAATCTGGACATTGATCGATCTTTATGCCTCCCGGTAGCTATACAATCCGAATCGGCTACCACTATTGAGACTAGGGAGGGGCACCTTGAGTGCTGGGCCAATTTCTGTGTTGGTTGGAGACCTTAATGCGTTGCAATCTAGACATTGATTGATTTTTGTGCTTCCCAGCAACTATACAATATGAATTGGCTACCACAATGGAGACCGCTTGAGTTCATGAGACTGGGGAGGGGCACCCCTAGTGCTAGACCAATCTCTGTGTCGGTTGGAGACTTTAATGCGTTGCAATTTGGACATTGATCGATTTTTATGCTTCCCAGCAGCTATACAATCCAAATCGATTACCACACTATAGAGATTGCTTGAATTCTTGAGACTGAGGAGGGCCACCTTAATGCTGGGTCAATTTCTGTATCGGTTGGAGATCAGGTTCGAGATGATATCATATGGTCCAAAGGGGTTGGGATTTAGAGAGAATTTACAATTAATTAAAAGAGATTTATCAAAATTTAAAATTTAAAGAATTAAGGAGGGAGAAAACGATCCAATAATCGCTTAACAATGGCGGCAAGCCGGCACAAAATTATTGTACAGAAGATTTGACAACTTGTTTCGGACATAGCCATGCATCTCTACTGTAAGAGTGTCTTCCCTTGATTTTTTTTTTTTGTCTCTGCTTTTGCTTTCCGTTGCTGTGTGAGCACATTCCGGCTCTGTAGCTCTAATTCATTCTATTATCCCTATCGAATTCGATGCATTTATGTTTAAACCGGTTGTTCAAACAATTATTCAGAGTTTCTAGAGCTCCTTGTAAGGCTGAGTGGAAAACCGGTTGCCTTACTTGATTCCAATTTGAAGTTGAGTTGTAATTCATTGGCGATTGGTTGAGTTGTAACTATTAGCTTGCTTGTGTAGTCGGTTGTTGATAATTTTACAAGTTGTCCCTTGAAGTTGACATCAGATATGACAGCAACAATATTAGTTCTATGAGTTAGAGAATTGTTTCTGGCTGCGTCCAATTGAATTTAAGCAGTTGTCGGTGGAGAGTTGTGGAAGTTCTGTATGTCACAGAGAGCGTAAGATGCTCGACGAAATGCCTGATCAAGACTTTTCTATCTCTACGCTGTTCATGTAAAGGTTTTACTGTTCGTGCTTGATGTGGTACTCTGAGGTGAAGATTCTAGAGCTAGTTCTTGGAGTTGCTTATGAGAACACCGCTTGACATGTTCTAGCCTCGAACTTTTAACTGTTCAAGGATATTTATGCTCTATTTCAATTTTGAGCATGAATGTGGAAACCTCTTGTTGTTATTGGAAATTAGGAATTTGAAGCTCCAATTGGGTTGTTGCTGTAAGGCTTGGTGACCTGCTGTAACTTTCTTGATCCTTCAGTCATGGGCCAAGCTTCAAGAGATAAGAGGGTCTTGACTACAATTCTATTCGGCTATTTGTCCTTTTGGTTCGTTACCTTTTTCCACGTTTTATTATTTACTTTGTCTCGTTTGCAGAATATATACTATAGTAAAGCAAAAGAAGAAGGCTGGCGTGCTCGAAGTGCGTTCAAACTTCTGAAAATAGATGAAGAATTAACATATTTGAAGGTTTGTTCTTGTGTTGGGCTCCTCTCTCTTAAAATATTTTTACCTTTCTGCTAGGATGTCAATCACTGAGATGGTCCAGATGAATGGTAATTGGTACTAAATATTCCTTTCCAAGAATACTAATTTCCTTTGTTTTTTAGGAGTTCTATGTCCTGGAGATGTCATTATTCCCTCGTGAACAATGCCGCAATATTTTGGATTAACCTTCCATAACAGAATAGTAGCTGGAGCCCCTGGTAGCTGGAGCTAGGTAATCTCTTTTGGGTGTCTTCTTGTTGCAATCTGTTCATCAAACTAGTGGACAATGCTTTATGGGGGAAATACAATTTTTCATATAAAATACAACTAATTCTTACAAGAATTCTGCAATATGAATCTCTCTTCTCATCTAGTTTCTTTTTTTCTTAGTCAGTCAAGTTGAAAGGTTTGCTGTGATCTCCTCTGTTCCTTGAGATTATTGCTTTGACGTGTAGATTATTTTTGACATGTTTAGCATTGGTAAAACTTGTCAAGTATTATAATGAATTGCGTGAGGACCATAATCAAAGCTAGGTCTCTGTTGTTTTACATTTTCGAGTTTTTTTTTTTTTTTTTTTTGTTGCAGCTGAAGTTGCTTTTCCCGTAGTGACTTTTGCAAGACCGAAAGGCAGTCGCAATTCCAGTATAGGTAACCTTTTGGCTTCACTTTTTTTATTGGTAACTCTAAAGGTCTATCTTTCGGTTATAATTGAACTTATTTCCTGAAAATAATACCCTTCTAAGTGAAAATTGTCATTATAGCGTCTGGTTCATAGGATTCTTACGCATGGATTTCAGATCCCATTGAACTTTAGATTGTTATCGTTTAATACTATGTGGGACTCGTGTCCACCCAACACCAAATTGTGGGGTTTGCTTATGTTCGTGGTGGCATCTGTAATATAAAAAAAAAAAACATGTAAAAGAGGACAAGATAGTCAAAAGGCAGCTCACATATTTTCTAAAACTTCGATGGTTATGTTTATGGACATTAAAAAGTTTTGAATTACAACCGTGAATTGTTCTATTTGATTCTAGGTAGTCGGTCGTTTAATACAATTGCTCAAATGTTGACGTGTCAGGCTGATTAAACTATAACTAGTTACAACTTACAAGTGATTATTTGGCATCATTTAACTTTTAAACAAAGTAGTGACTATGATTTAACTTTATGTTCATGTTGAAGCCCATACGTGGACTGGGTGTGAATGTTGAGGCATTTGTAGTTTGTGAGAATTATTCGCCTCCTGAGGGTTTCAACCCATAAGATCCAACCCCTGCTAGAAAAGGTGGGAAGCCCATCAGGAGGAGATGACTTAGGTAAACTCGATGTACGACCTTGATTGGGAGTTCACATATCGAAGGACGTGATACAACATGTTCTTGTTCTTTAAAGATTAATATGTTTTACAGCTGGCTATGACCATGTCTTCTTGTCTTTAAACTTCATATAATTAGTGTCTCTGATTTCAATGTGATCAATTCCCTGATATTTTTGGTTACACAAGAGGAAGTAATAGCATTGCTATTTTGCTGCATTGTGTCCCTCTCAGATTGCAGTAGTGGGTGGCTGGGAGGACCCAATAAAGTATCCCCTCAGCGGATATGATTCCGATCGTTCATACCCACTGCCCAGAGGTGCCGAGGGAACTTTGATCCTGTGCAACCTCCTAGTGCCCCTCCTTACAACAGGGCTCTTGAAATGAAGAAGACCTTCCAGTGAAGGAATTCGAGAACTGAACCTTCCTTGGATTCCGGATTGTGCTATTCAATGTTAGATAACCTGCAAAGTTGATTTGGGATGGACCGGTAATTATTAAGAAACAGCAATCATTTCTCCCTCCCCCCCTCTCAGTCTCTGTCCTATTTTTGTAAAAAAAAAAAAGAAATGCTGTGGATCTTGATTTGGATTATTTTAACTGAAATACATAAAGATTAAGATGTATTGTGATAAGCACGAGATTATCCCGCACGAGTCTTAATCATCCTTCATAATTTCCATGGACATGAACCCCACCCCCATGCATACCTCAAACAAAAACAAGAAAGGAAAATCATTTTGAGCATTACACATTTTCTAAGGGCATTTTACTGCATGTCGGTCTGCATGTTTCTATGTTTTTCATATGCAAATGTTTGGACAAACTGGGGTTTTACAGGTGGCCCCCCTGATTGTGAATCAACCAACCATCCTTGCTAATGGGAATCTGAGCTATTCAAAGGCGTGGCCCTCAAAATTCACAGGTCTAACTCATCCCTTTCTAACTGTTGCCTTCTAAAAATTTATGACCCGACATATCACGCATAGAGATTCTTGTTGTCTATCCCATTCCCTCCTTTTGGAGATGCCATAATTTAGGCGTTTAATGGTGGACATCATTGAACAAAAATAACTCAGTGAAATAAACTTATATGTTCATTTTTTTTTTTTTTACCTCATCGAGTGATATATTGTAGATATCCAATTTATGTAATTTTATAATGAACAGATATCTGCTCGAGCTCAAGGCATTTAGACAAGAAAAGTTTCGAGCTTCGAAGACTGAAACTCGATTATCATCTGCTACAGCATCATCTTACAGAGACGGGCACGCAAAAGAATGTCTAA

mRNA sequence

ATGGCTAGTTTCGGAGCATGTATTTTCCTGACCATTTTTGTGTTCAATGTCAATTGTACACCCTCACTTTATTTGCGCAAACATGTTGTCACGTCGACCACTCATTTATCTTTTTCTCATAAGTTGTCGGTGGAGAGTTGTGGAAGTTCTGTATGTCACAGAGAGCGCTTGGTGACCTGCTGTAACTTTCTTGATCCTTCAGTCATGGGCCAAGCTTCAAGAGATAAGAGGAATATATACTATAGTAAAGCAAAAGAAGAAGGCTGGCGTGCTCGAAGTGCGTTCAAACTTCTGAAAATAGATGAAGAATTAACATATTTGAAGGAGTTCTATCTGGAGCTAGCTGAAGTTGCTTTTCCCGTAGTGACTTTTGCAAGACCGAAAGGCAGTCGCAATTCCAGTATAGATTGCAGTAGTGGGTGGCTGGGAGGACCCAATAAATTGATTTGGGATGGACCGGTGGCCCCCCTGATTGTGAATCAACCAACCATCCTTGCTAATGGGAATCTGAGCTATTCAAAGGCGTGGCCCTCAAAATTCACAGATATCTGCTCGAGCTCAAGGCATTTAGACAAGAAAAGTTTCGAGCTTCGAAGACTGAAACTCGATTATCATCTGCTACAGCATCATCTTACAGAGACGGGCACGCAAAAGAATGTCTAA

Coding sequence (CDS)

ATGGCTAGTTTCGGAGCATGTATTTTCCTGACCATTTTTGTGTTCAATGTCAATTGTACACCCTCACTTTATTTGCGCAAACATGTTGTCACGTCGACCACTCATTTATCTTTTTCTCATAAGTTGTCGGTGGAGAGTTGTGGAAGTTCTGTATGTCACAGAGAGCGCTTGGTGACCTGCTGTAACTTTCTTGATCCTTCAGTCATGGGCCAAGCTTCAAGAGATAAGAGGAATATATACTATAGTAAAGCAAAAGAAGAAGGCTGGCGTGCTCGAAGTGCGTTCAAACTTCTGAAAATAGATGAAGAATTAACATATTTGAAGGAGTTCTATCTGGAGCTAGCTGAAGTTGCTTTTCCCGTAGTGACTTTTGCAAGACCGAAAGGCAGTCGCAATTCCAGTATAGATTGCAGTAGTGGGTGGCTGGGAGGACCCAATAAATTGATTTGGGATGGACCGGTGGCCCCCCTGATTGTGAATCAACCAACCATCCTTGCTAATGGGAATCTGAGCTATTCAAAGGCGTGGCCCTCAAAATTCACAGATATCTGCTCGAGCTCAAGGCATTTAGACAAGAAAAGTTTCGAGCTTCGAAGACTGAAACTCGATTATCATCTGCTACAGCATCATCTTACAGAGACGGGCACGCAAAAGAATGTCTAA

Protein sequence

MASFGACIFLTIFVFNVNCTPSLYLRKHVVTSTTHLSFSHKLSVESCGSSVCHRERLVTCCNFLDPSVMGQASRDKRNIYYSKAKEEGWRARSAFKLLKIDEELTYLKEFYLELAEVAFPVVTFARPKGSRNSSIDCSSGWLGGPNKLIWDGPVAPLIVNQPTILANGNLSYSKAWPSKFTDICSSSRHLDKKSFELRRLKLDYHLLQHHLTETGTQKNV

Homology

[Close]

BLAST of CmaCh06G002390 vs. ExPASy Swiss-Prot
Match: Q54VA8 (Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Dictyostelium discoideum OX=44689 GN=fsjA PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-09
Identity = 28/35 (80.00%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 69  MGQASRDKRNIYYSKAKEEGWRARSAFKLLKIDEE 104
           MG++S+DKR+IYY KAKEEGWRARSAFKL++IDEE
Sbjct: 1   MGKSSKDKRDIYYRKAKEEGWRARSAFKLIQIDEE 35

[Close]

BLAST of CmaCh06G002390 vs. ExPASy Swiss-Prot
Match: Q9VEP1 (Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 1 OS=Drosophila melanogaster OX=7227 GN=CG5220 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-07
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 69  MGQASRDKRNIYYSKAKEEGWRARSAFKLLKIDE 103
           MG+ S+DKR+IYY +AK+EGWRARSAFKLL +DE
Sbjct: 1   MGKTSKDKRDIYYRQAKDEGWRARSAFKLLHVDE 34

[Close]

BLAST of CmaCh06G002390 vs. ExPASy Swiss-Prot
Match: Q22031 (Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Caenorhabditis elegans OX=6239 GN=R74.7 PE=3 SV=3)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-07
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 69  MGQASRDKRNIYYSKAKEEGWRARSAFKLLKIDEELTYLK 109
           MG+ SRDKR+IYY  AKE  WRARSAFKL++ID+E   LK
Sbjct: 1   MGKTSRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILK 40

[Close]

BLAST of CmaCh06G002390 vs. ExPASy Swiss-Prot
Match: Q9UET6 (Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Homo sapiens OX=9606 GN=FTSJ1 PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-07
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 69  MGQASRDKRNIYYSKAKEEGWRARSAFKLLKIDEE 104
           MG+ S+DKR++YY  AKE GWRARSAFKLL++D+E
Sbjct: 1   MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKE 35

[Close]

BLAST of CmaCh06G002390 vs. ExPASy Swiss-Prot
Match: P38238 (tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRM7 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.0e-07
Identity = 23/41 (56.10%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 69  MGQASRDKRNIYYSKAKEEGWRARSAFKLLKIDEELTYLKE 110
           MG++S+DKR++YY KAKE+G+RARSAFKLL+++++  +L +
Sbjct: 1   MGKSSKDKRDLYYRKAKEQGYRARSAFKLLQLNDQFHFLDD 41

[Close]

BLAST of CmaCh06G002390 vs. ExPASy TrEMBL
Match: A0A6S7PR47 (Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS37361 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-08
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 31  TSTTHLSFSHKLSVESCGSSVCHRERLVTCCNFLDPSVMGQASRDKRNIYYSKAKEEGWR 90
           TS + L    +L       SV H     T  ++    +MG+ASRDKR+IYY KAKEEGWR
Sbjct: 28  TSASSLRSCRRLQRSPISWSVAH-----TTLHYKQVQIMGKASRDKRDIYYRKAKEEGWR 87

Query: 91  ARSAFKLLKIDEE 104
           ARSAFKLL+IDEE
Sbjct: 88  ARSAFKLLQIDEE 95

[Close]

BLAST of CmaCh06G002390 vs. ExPASy TrEMBL
Match: A0A6J1GES5 (putative tRNA (Cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111453504 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 69  MGQASRDKRNIYYSKAKEEGWRARSAFKLLKIDEE 104
           MG+ASRDKRNIYYSKAKEEGWRARSAFKLL IDEE
Sbjct: 1   MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEE 35

[Close]

BLAST of CmaCh06G002390 vs. ExPASy TrEMBL
Match: A0A2P2KBS6 (Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-08
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 69  MGQASRDKRNIYYSKAKEEGWRARSAFKLLKIDEELTYLKE 110
           MG+ASRDKR+IYY KAKEEGWRARSAFKLL+IDEE    +E
Sbjct: 1   MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEE 41

[Close]

BLAST of CmaCh06G002390 vs. ExPASy TrEMBL
Match: A0A1J3HHG8 (Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Noccaea caerulescens OX=107243 GN=LC_TR7434_c10_g1_i1_g.26276 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.5e-08
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 69  MGQASRDKRNIYYSKAKEEGWRARSAFKLLKIDEELTYLK 109
           MG+ASRDKR+IYY KAKEEGWRARSAFKLL+IDEE    K
Sbjct: 1   MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFK 40

[Close]

BLAST of CmaCh06G002390 vs. ExPASy TrEMBL
Match: A0A6D2L592 (Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS49048 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.5e-08
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 69  MGQASRDKRNIYYSKAKEEGWRARSAFKLLKIDEELTYLK 109
           MG+ASRDKR+IYY KAKEEGWRARSAFKLL+IDEE    K
Sbjct: 1   MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFK 40

[Close]

BLAST of CmaCh06G002390 vs. NCBI nr
Match: KAG6596355.1 (putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221.1 bits (562), Expect = 9.5e-54
Identity = 120/159 (75.47%), Postives = 124/159 (77.99%), Query Frame = 0


Query: 69  MGQASRDKRNIYYSKAKEEGWRARSAFKLLKIDEELTYLK------EFYLELAEVAFPVV 128
           MG+ASRDKRNIYYSKAKEEGWRARSAFKLL IDEE    +            AEVAFPVV
Sbjct: 1   MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAPAEVAFPVV 60

Query: 129 TFARPKGSRNSSI-DCSSGWLGGPNKLIWDGPVAPLIVNQPTILANGNLSYSKAWPSKFT 188
           TFA+PKGSRNSSI    +G   GP          PLIVNQPTILANGNLSYSKAWPSKFT
Sbjct: 61  TFAKPKGSRNSSIAHTRTGCECGP----------PLIVNQPTILANGNLSYSKAWPSKFT 120

Query: 189 DICSSSRHLDKKSFELRRLKLDYHLLQHHLTETGTQKNV 221
           DICSSSRHLDKK FELRRLKLDYHLLQHHLTETGTQKNV
Sbjct: 121 DICSSSRHLDKKGFELRRLKLDYHLLQHHLTETGTQKNV 149

[Close]

BLAST of CmaCh06G002390 vs. NCBI nr
Match: KAG7027905.1 (Sulfoquinovosyl transferase SQD2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.5 bits (249), Expect = 1.9e-17
Identity = 53/74 (71.62%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 69  MGQASRDKRNIYYSKAKEEGWRARSAFKLLKIDEELTYLK------EFYLELAEVAFPVV 128
           MG+ASRDKRNIYYSKAKEEGWRARSAFKLL IDEE    +            AEVAFPVV
Sbjct: 1   MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAPAEVAFPVV 60

Query: 129 TFARPKGSRNSSID 137
           TFA+PKGSRNSSI+
Sbjct: 61  TFAKPKGSRNSSIE 74

[Close]

BLAST of CmaCh06G002390 vs. NCBI nr
Match: KAG6580486.1 (putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-09
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 48  GSSVCHRERLVTCCNFLDPSVMGQASRDKRNIYYSKAKEEGWRARSAFKLLKIDEE 104
           G S  H ++L+     LD S+MG+ASRDKR+IYY KAKEEGWRARSAFKLL+ID+E
Sbjct: 5   GLSSQHYQKLL-----LDSSIMGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDDE 55

[Close]

BLAST of CmaCh06G002390 vs. NCBI nr
Match: CAB4110513.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-08
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 31  TSTTHLSFSHKLSVESCGSSVCHRERLVTCCNFLDPSVMGQASRDKRNIYYSKAKEEGWR 90
           TS + L    +L       SV H     T  ++    +MG+ASRDKR+IYY KAKEEGWR
Sbjct: 28  TSASSLRSCRRLQRSPISWSVAH-----TTLHYKQVQIMGKASRDKRDIYYRKAKEEGWR 87

Query: 91  ARSAFKLLKIDEE 104
           ARSAFKLL+IDEE
Sbjct: 88  ARSAFKLLQIDEE 95

[Close]

BLAST of CmaCh06G002390 vs. NCBI nr
Match: XP_022950393.1 (putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase [Cucurbita moschata])

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-08
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 69  MGQASRDKRNIYYSKAKEEGWRARSAFKLLKIDEE 104
           MG+ASRDKRNIYYSKAKEEGWRARSAFKLL IDEE
Sbjct: 1   MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEE 35

[Close]

BLAST of CmaCh06G002390 vs. TAIR 10
Match: AT5G01230.2 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-11
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 69  MGQASRDKRNIYYSKAKEEGWRARSAFKLLKIDEE 104
           MG+ASRDKR+IYY KAKEEGWRARSAFKLL+IDEE
Sbjct: 1   MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEE 35

[Close]

BLAST of CmaCh06G002390 vs. TAIR 10
Match: AT5G01230.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-11
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 69  MGQASRDKRNIYYSKAKEEGWRARSAFKLLKIDEE 104
           MG+ASRDKR+IYY KAKEEGWRARSAFKLL+IDEE
Sbjct: 1   MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEE 35

The following BLAST results are available for this feature:

BLAST of CmaCh06G002390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54VA8	3.3e-09	80.00	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Dictyosteli...	[more]
Q9VEP1	1.4e-07	73.53	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 1 OS=Drosophil...	[more]
Q22031	1.8e-07	67.50	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Caenorhabdi...	[more]
Q9UET6	4.1e-07	68.57	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Homo sapien...	[more]
P38238	7.0e-07	56.10	tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Saccharomyces cerevi...	[more]

BLAST of CmaCh06G002390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6S7PR47	1.0e-08	53.42	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Lactuca sal...	[more]
A0A6J1GES5	1.3e-08	94.29	putative tRNA (Cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Cucurbita m...	[more]
A0A2P2KBS6	5.0e-08	78.05	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Rhizophora ...	[more]
A0A1J3HHG8	6.5e-08	80.00	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Noccaea cae...	[more]
A0A6D2L592	6.5e-08	80.00	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Microthlasp...	[more]

BLAST of CmaCh06G002390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596355.1	9.5e-54	75.47	putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase, partial [Cucu...	[more]
KAG7027905.1	1.9e-17	71.62	Sulfoquinovosyl transferase SQD2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6580486.1	4.2e-09	66.07	putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase, partial [Cucu...	[more]
CAB4110513.1	2.1e-08	53.42	unnamed protein product [Lactuca saligna]	[more]
XP_022950393.1	2.7e-08	94.29	putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase [Cucurbita mos...	[more]

BLAST of CmaCh06G002390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01230.2	2.8e-11	88.57	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]
AT5G01230.1	2.8e-11	88.57	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10920:SF25	TRNA (CYTIDINE(32)/GUANOSINE(34)-2'-O)-METHYLTRANSFERASE-RELATED	coord: 69..106
None	No IPR available	PANTHER	PTHR10920	RIBOSOMAL RNA METHYLTRANSFERASE	coord: 69..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G002390.1	CmaCh06G002390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0002128	tRNA nucleoside ribose methylation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0008175	tRNA methyltransferase activity