CmaCh06G002020 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G002020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	pentatricopeptide repeat-containing protein At2g38420, mitochondrial
Location	Cma_Chr06: 1038629 .. 1042143 (+)
RNA-Seq Expression	CmaCh06G002020
Synteny	CmaCh06G002020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGATTATTTGATAACGAAGAGGAATCCTCTCGCAGTGAGATGCTTAGCTTTCTGGAACAAAAGAGGTATGATTCTGTCCCGTTTTTTGGATTATTCTAATGTAATTAAGTTCTTCGTTAAGAGAGGGACGAGTTCAGATGCTTTCGATCCATTGAATATAATGAAGGTCGATGGATTCAAGCCTTCTTGAATGGGGATAATAGGATTGCAGATGAACTGTTTGATGAAATGCCTGTTTGGTTTAGTTCCTAATATTTATACTATAGAATGTGTACAGGCATGGATTATGCAAACAAGGTAATCCAGAAACAGGAATTCAAATGGGGTGCAAACCTGATGCGATTACTTACAGTATTCTCTTGGAAATGTTGTGTATAATCGGAAACTTGACGACGCAAGGAAGTTTCAGAAGTGAGATGCAGCTAAAGAGGGCTGGCAGATTACTTGCTGGCTTTTAGGATTATGAATCATGGTGATGTAATTGAAGCCATTTGAAAGAAATTCTTGGAAGTTGTTTCCCTCGTCAGATTTCAACTTCTGGTGATATACTTTCTAGCTAATTTAAACTTTTCTGCGTTAGTGATACAGTTATGTTTGTTTACGATGTGTGGTATCTTTTTACTTACTTTCTTATTAGTTAAATCTTTATTATTTTATATTATAATTTGTGTGTGTATGTCACTTAAAATCAAATCTGGTTATATTTTTCGTATCTGAGTTATATGCGATTAATGTCATCATTATTACTTATTACTAGTCTATAACATTGCTTTCCAAATGTTTTCTAAAACTTTCTATCCCGTTTTCTAAAATCTTTTATCAAGAACGGAGTCGAGGCTTGATGTGAGATCTTACGTTGGTTAGAGTAGAATGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACCTTGAGGAGAAACCCAGAAGAAAAAGTCTAAAGAGGACAATATTTGTTAGTGATGGTCTTAGACGGTTACACTTGAGCATCATATGTCGCTCATGCCAATAGCGACCCAAGTTTTAGTTGAATCATTTATTTGAGGGTAAAAGTAAGTGTCTCATAGTCGTACTGCGAGTCCTGACAGATTGCAATTGTGACATTGGATAGGTATTGCAACGACAACTTTGTTAACTCGTGTTGTGGTAGACCGGATCGATACTTCACATAACCTTTTGTCTGAAAAAAGAAAGGACGCGCCCTTCCTTTCTATGCAGCTCAACCTTCTGGTGGTGTAAATGTAAGTGGAAACTTTAACCAATGCTTACTTTTTATCAAGCCATATTATAAATCATCATTGTCCCATAATTTGTTTTTTATCAAAGATGATTCACTTGAGCATTATTCATTACTTTTTTTTCCCCAATACTTTGCTCTGCTGTAAAGATAACTTATTTAATCCTAAGCTGTGAATATAGTGGAAACTTTGGCTAGCTTGGCAAGAAAACAGGCATATTACTTGATGCTAGTTGATTAGTCTGCTTTTAAGTATAAGAAGTAATGTGGATCTACGAAGCCAAGCTAATATGAGCCTTCTATTGCCATGTTATGTCATGGTCATTTTGGCATCTTATCATTAGTGGCTGTTTTCAGATATCTCACATATTTTGTTCAGATAAACTATAATCAAAATCATCTGATCATGGGACTTTGTTTTCTTGTATTCTTCAATATGAAAGCGTAGATTGTTCTGAAATAGACGGCCTGTTGCTAATGAATTGGGAACTTTGCAAGTGCCTAGATATTAGATCTGATTAGATAATGTTCCTTGGGTTTACATGCGTGCATGGGAGTTGGACTAAGAACTTTATAGTCGGAGTTCGGTAAATTGGATATCATCCTACCTCATTAGGTTGCCCTGGTGAATGGACTCTTTTTTCCTCTGTTAGAAACTGATGTGAAGAGTGGCCAGTTCTTAATTTTGGGCTGAAAAGGGTGATTTTACGAGAGAAGAGTTATCTCTGTTGTCATGAGGCATTTTGGAGAAATCAAAAGCAAAGCCACGAGAGCTAATGCTCAAAGTGGACTCATACCATTATGGAGGTTTATGGTTCCTGCAAATGGTATCAGAGCTAGACACCTCCCTAAAGGGGTAGATTGTGAGATTCAATGTTGGTTGGAAAGAATAACAAAACATTTCTTCAAAGAGTATGGAAACCTCTTCCAAATAGACGCATTTTAAAACCGGAGGGAAAGTCCAGAAAGAAAAACATTTCTTAACACGTTGAGCCTGTGGGCTTAGCTGTTACACCGTTTTAAGAGTAGTCATAAACCTATTCTCCAATATTTTTTTGAAAGGCAGGTCCAACCAATTTCTTTGTTGAATCTCACTAACTATTAACTTTTGAAGAACTTGAGAGTCCCACTTGGAAGTTGGAGGCTGCTGTGTAATTAAAATATATATATATTTGAACGAACCTTTACATAAGCCCAACTAAAAAGAATCTAGGATTTCTGTGTTTTATATTACATGTCCTTACACACTTTGCTACACAAGGAGGGTGGGATGCCTTTATTTATAGTGGTTGAATACAAGTTATAATATGAAAAAAAAAAAAAAATGTCGCAAAAGAAAACCAGAAAACCAGAACTTTCAAACTACATTATCTTCAAGATTTCCCCCAAGGATTTGATAATCATTAGAGGAGTTCAAAAGATTGATAATTCGAAAAACCCGATCAACCTAATTCATTCTACACGATTTGGGTTTGTTAAGGATTATTAAGAGAAATAGTCCCACACTGACTAATTAAGGAGAAAATCATGAGTTTAAGGAACACAATCTTCATTGGTCTGATACCTTTTGGATTGGAGAAACAAAAAACAAAACCACAAGAGCTTAGGTTCAAAATAAACAATATCATGTCATTGTGAAGATTCGTTGTTTCTAACATAGTATCAAAGTCATGCTCTTAACTTAATTGGGAGCTTCGAAAGTGTAGTTAAAGTGACTCAAGTATCGAAGAAATGATATACCTTGTTCCATAGCTCCAAAGAAGAAAGCTAACTAATCACAAACCAAAGTTACTTTTTTTTTTTTTTTTAATATTTTTACCTTAACCATTATAGTGACCTCTTCTTCTGCCTATTTTGCTCTTACTTTCATTTAGGATTCTTTGGTGTTATCACTCTTATTGACCATTCATTTTGGGACAACTATTTCATTGTATGCCTTCCTGTGGATATTAAGTGGATCAATTCCACTTCTTTTATGATTAATTGATTGAATATTTGGTTACAACTTAGTGGATTAGTTTCATTCATTGCTACTGATCCACACCAAAACTTGTTGTGAATGATTGTTTGAAGATTTCATAAGTTTCTCCGTGGAAGAAGGAGAAGATTGTGCCACTACAGTGAAACGAGCTAGCTCACATGATACACGAGAGGCTCCACATGTGTAATAAGTTCAAAAAAGGATGCTAAAAGAGGTTGAAGCTTTCGCATTTGTGTCCATTCGAATTTATTTTGCGCGTGATTCTAAAGATGTGAAGAG

mRNA sequence

TCGATTATTTGATAACGAAGAGGAATCCTCTCGCAGTGAGATGCTTAGCTTTCTGGAACAAAAGAGGCATGGATTATGCAAACAAGGTAATCCAGAAACAGGAATTCAAATGGGGTGCAAACCTGATGCGATTACTTACAGTATTCTCTTGGAAATGTTGTGTATAATCGGAAACTTGACGACGCAAGGAAGTTTCAGAAGTGAGATGCAGCTAAAGAGGGCTGGCAGATTACTTGCTGGCTTTTAGGATTATGAATCATGGTGATGTAATTGAAGCCATTTGAAAGAAATTCTTGGAAGTTGTTTCCCTCGTCAGATTTCAACTTCTGGTATTGCAACGACAACTTTGTTAACTCGTGTTGTGGTAGACCGGATCGATACTTCACATAACCTTTTGTCTGAAAAAAGAAAGGACGCGCCCTTCCTTTCTATGCAGCTCAACCTTCTGGTGGTGTAAATATTTCATAAGTTTCTCCGTGGAAGAAGGAGAAGATTGTGCCACTACAGTGAAACGAGCTAGCTCACATGATACACGAGAGGCTCCACATGTGTAATAAGTTCAAAAAAGGATGCTAAAAGAGGTTGAAGCTTTCGCATTTGTGTCCATTCGAATTTATTTTGCGCGTGATTCTAAAGATGTGAAGAG

Coding sequence (CDS)

ATGCTTAGCTTTCTGGAACAAAAGAGGCATGGATTATGCAAACAAGGTAATCCAGAAACAGGAATTCAAATGGGGTGCAAACCTGATGCGATTACTTACAGTATTCTCTTGGAAATGTTGTGTATAATCGGAAACTTGACGACGCAAGGAAGTTTCAGAAGTGAGATGCAGCTAAAGAGGGCTGGCAGATTACTTGCTGGCTTTTAG

Protein sequence

MLSFLEQKRHGLCKQGNPETGIQMGCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLKRAGRLLAGF

Homology

[Close]

BLAST of CmaCh06G002020 vs. ExPASy TrEMBL
Match: A0A6J1IZC4 (pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111482051 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 35/57 (61.40%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 10  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK 60
           HGLCKQGN E GIQM       GCKPD ITY+ILLE LC IG L      R  MQLK
Sbjct: 333 HGLCKQGNWEAGIQMILHMEELGCKPDVITYNILLECLCKIGELDEARKLRGNMQLK 389

[Close]

BLAST of CmaCh06G002020 vs. ExPASy TrEMBL
Match: A0A6J1F5E3 (pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111442310 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 35/57 (61.40%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 10  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK 60
           HGLCKQGN E GIQM       GCKPD ITY+ILLE LC IG L      R  MQLK
Sbjct: 333 HGLCKQGNWEAGIQMILPMEELGCKPDVITYNILLECLCKIGELDEARKLRGNMQLK 389

[Close]

BLAST of CmaCh06G002020 vs. ExPASy TrEMBL
Match: A0A1S3B651 (pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103486244 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.7e-08
Identity = 34/66 (51.52%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 10  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLKRAG 69
           HGLCKQGN   G+QM       GCKP+ ITY+ILL+ LCI G L      RS+MQLK   
Sbjct: 328 HGLCKQGNSAAGLQMISHMEALGCKPNVITYNILLKSLCITGELDEARKLRSKMQLKGLA 387

[Close]

BLAST of CmaCh06G002020 vs. ExPASy TrEMBL
Match: A0A5D3DN26 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00370 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.7e-08
Identity = 34/66 (51.52%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 10  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLKRAG 69
           HGLCKQGN   G+QM       GCKP+ ITY+ILL+ LCI G L      RS+MQLK   
Sbjct: 328 HGLCKQGNSAAGLQMISHMEALGCKPNVITYNILLKSLCITGELDEARKLRSKMQLKGLA 387

[Close]

BLAST of CmaCh06G002020 vs. ExPASy TrEMBL
Match: A0A5A7TL23 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005720 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.7e-08
Identity = 34/66 (51.52%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 10  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLKRAG 69
           HGLCKQGN   G+QM       GCKP+ ITY+ILL+ LCI G L      RS+MQLK   
Sbjct: 328 HGLCKQGNSAAGLQMISHMEALGCKPNVITYNILLKSLCITGELDEARKLRSKMQLKGLA 387

[Close]

BLAST of CmaCh06G002020 vs. NCBI nr
Match: KAG7017195.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 35/57 (61.40%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 10  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK 60
           HGLCKQGN E GIQM       GCKPD ITY+ILLE LC IG L      R  MQLK
Sbjct: 333 HGLCKQGNWEAGIQMILPMEELGCKPDVITYNILLECLCKIGELDEARKLRGNMQLK 389

[Close]

BLAST of CmaCh06G002020 vs. NCBI nr
Match: XP_022983450.1 (pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita maxima] >XP_022983451.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita maxima] >XP_022983452.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita maxima] >XP_022983453.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita maxima] >XP_022983454.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita maxima])

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 35/57 (61.40%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 10  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK 60
           HGLCKQGN E GIQM       GCKPD ITY+ILLE LC IG L      R  MQLK
Sbjct: 333 HGLCKQGNWEAGIQMILHMEELGCKPDVITYNILLECLCKIGELDEARKLRGNMQLK 389

[Close]

BLAST of CmaCh06G002020 vs. NCBI nr
Match: XP_023527573.1 (pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023527574.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023527575.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023527576.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023527577.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023527578.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023527580.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023527581.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023527582.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 35/57 (61.40%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 10  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK 60
           HGLCKQGN E GIQM       GCKPD ITY+ILLE LC IG L      R  MQLK
Sbjct: 333 HGLCKQGNWEAGIQMILHMEELGCKPDVITYNILLECLCKIGELDEARKLRGNMQLK 389

[Close]

BLAST of CmaCh06G002020 vs. NCBI nr
Match: XP_022935432.1 (pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita moschata] >XP_022935433.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita moschata] >XP_022935434.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita moschata] >XP_022935436.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita moschata] >XP_022935437.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita moschata] >KAG6580438.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 35/57 (61.40%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 10  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLK 60
           HGLCKQGN E GIQM       GCKPD ITY+ILLE LC IG L      R  MQLK
Sbjct: 333 HGLCKQGNWEAGIQMILPMEELGCKPDVITYNILLECLCKIGELDEARKLRGNMQLK 389

[Close]

BLAST of CmaCh06G002020 vs. NCBI nr
Match: XP_038903517.1 (pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903518.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903520.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903521.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903522.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903523.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903524.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903525.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903526.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903527.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903528.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903529.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903530.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida] >XP_038903531.1 pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa hispida])

HSP 1 Score: 67.0 bits (162), Expect = 7.1e-08
Identity = 36/66 (54.55%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 10  HGLCKQGNPETGIQM-------GCKPDAITYSILLEMLCIIGNLTTQGSFRSEMQLKRAG 69
           HGLCKQGN E GIQM       GCKP+ ITY+ILLE LC  G L      RS+MQLK   
Sbjct: 333 HGLCKQGNLEAGIQMILHMEELGCKPNVITYNILLESLCKTGELDEARKLRSKMQLKGLA 392

The following BLAST results are available for this feature:

BLAST of CmaCh06G002020 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G002020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IZC4	1.2e-08	61.40	pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Cucurbit...	[more]
A0A6J1F5E3	1.2e-08	61.40	pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Cucurbit...	[more]
A0A1S3B651	7.7e-08	51.52	pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Cucumis ...	[more]
A0A5D3DN26	7.7e-08	51.52	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7TL23	7.7e-08	51.52	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of CmaCh06G002020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017195.1	2.4e-08	61.40	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022983450.1	2.4e-08	61.40	pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita ...	[more]
XP_023527573.1	2.4e-08	61.40	pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Cucur...	[more]
XP_022935432.1	2.4e-08	61.40	pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Cucurbita ...	[more]
XP_038903517.1	7.1e-08	54.55	pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Benincasa ...	[more]

BLAST of CmaCh06G002020 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 24..46 e-value: 5.1E-6 score: 26.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G002020.1	CmaCh06G002020.1	mRNA