CmaCh06G001790 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G001790
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	50S ribosomal protein L17
Location	Cma_Chr06: 918478 .. 920659 (+)
RNA-Seq Expression	CmaCh06G001790
Synteny	CmaCh06G001790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAACTGCTCGCTCCTAAGCCGTCTAGACAACCTATCCTTATCTTGTTATCCATAGTCCACGGACTGGGACACTCCTACAATGGCAATGGCGATTACGACGGCGACGGCAACGGCGAACAGCCGGTGGAGCTTCTCGTCAATGAGGTCAGCGCTACCTTCTGTGGAAGTAGGAGTTCGTACTCCCTCTCGCGTCAGCTTCCCGTCGTCCAATGGTCGAGTCAGTGGCAGAACCTGCAGCAAACAGATTGCCTCTTTTTCGGGCTTGTGCCCTTTGAACCCTCTCATTTCTATTGGCTCATCAGGTAATTCCGTTCCCTCTCATTCGCTACTTGTGTAGCATCGTCTAATTTGATCTTTACTCTGCGGATTCGTGCGTCTATTCTGCCTCTGATGGCTGATTGACTTACGTTCTATGAATTCAATGGTTCTGCAATAGTTTTATGTTTTCGGTTTTGATTTCTGTTTGAATTGGTGTGTCTCTTTTATCCGGAAGCGTTTTCCTACTAATCCTACACTGAAGTCTCCTGCTAATTTTGGGAACAATGAGAAATCTTGAGTTCATATTCGCGGAAAATGAAATATGAAATGTCGATCACCGTTTGTTGCACACCTAATGAGTTTCAATGGGAGAGGAAACGTGAAAATCTTTAGATTTCCTTCTTTCTTTGCTCCGTCCGTGCGAACGAGTATTTATTTCCAATCCCTGCAGCATTTTGTCTGTCGAACAATTGTCAACAATAGGACTGGATTGAAGTAAGTGAATTTTCAGCATTTCGATCATTAAGCATCCATCCTCCATTAAGGCAGCAATGTACAAGATTCTCTATGAATCAATTATTGTCAATATAGACTTTCAACTCGTAAATTTGATTCTTCCTCACGAAGGGTTTGATTCGATACCTATTAAGACAGCTACCTACGGGTTCTAGACAAAATTCGTCCCACCCCATCGCTCCTTTGCTTAGGTTTACTCGCCTCTAATGAATTTAGACATGAATTGAACACCTGTGTTCTGGACACCATAATTTTATTACATTTTGCGCCTATATTTACCGAGCTGGACAAAGTCATGTGCTTGCTTAGTACTAGGTTGGGTATAAACTTTGCTTATAGATTAAATTCTTGTGCACATGATATAGATGTTCTTGAATATTGCTCTCATGGAGCTTATAATTACTTCCGCATATCACTTGATGAGCGAAGTTAACGTTTCAAAACTCTGCAATTTAGTGGCCGAGTATTGTACTAAGTTTTTTGTTGTTGAATGTAGTAGAACGTTAGGTAGTTTCAAGAATATTTAGCCTTGAATTATGATTTACCATATGTATCATATTTAACCCTTGATCATAGGCTAATATCGTGTATACATTTATTGTTATTTCCATTTTCTTTTAATTTATTTGATTCCATTACTATTTTCTTTGTAATTTATTTGATTCGGCAAATGATTATAAATAGAGAACCTTCACTAACATTTAGGTGTGATGGTTTTAGCAAATATTCTCAAAGATTAGATTATAAAAATAGTCATAAACTATCCTAGAATCCCACAACTATAATAAAAATAATACCTTGTCACTTGTTACGTAAATCTCATCAAATAAAAAGAATTGTTTGAAGATTATAAGCGCACATGGAATTCCTGAGATTCATACAAGTTCTTGGGAGCATGATTTTCAAACAGTTTCTAATGGAATTCCTGAGATTCATACAAGTTCTTGGGAGCATGATGTTCAAACAATTTCTAATGGAATTCCTGTTCATGATGCAGATTACAACAGCTTTGAACAAAACTTTACAATTGTTGATAATGGTTACCGAGTTTTTGCCATGAGACATGGCAAGCGGGTACCTAAGCTCAACAGGCCTCCTGACCAACGGCGTGCACTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGAATCAAGACCACCAGAGCAAGAGCCAGTGCTGTGCGTAAGTATGTTGACAAAATGATCACGTTAGCAAAGGACGGTTCTTTGCATAAAAGGAGACAGGCTTTAGGCTTCATCTACGAAAAGCAGATTGTTCACGCTTTATTTGCCGAAGTCAAAGATAGGTATGGGGAGAGAAATGGTGGATATACCAGAATTTTAAGAACACTGCCTAGGCGAGGGGACAATGCGCCTATGGCATTCATTGAACTTGTCTGA

mRNA sequence

GAAACTGCTCGCTCCTAAGCCGTCTAGACAACCTATCCTTATCTTGTTATCCATAGTCCACGGACTGGGACACTCCTACAATGGCAATGGCGATTACGACGGCGACGGCAACGGCGAACAGCCGGTGGAGCTTCTCGTCAATGAGGTCAGCGCTACCTTCTGTGGAAGTAGGAGTTCGTACTCCCTCTCGCGTCAGCTTCCCGTCGTCCAATGGTCGAGTCAGTGGCAGAACCTGCAGCAAACAGATTGCCTCTTTTTCGGGCTTGTGCCCTTTGAACCCTCTCATTTCTATTGGCTCATCAGATTACAACAGCTTTGAACAAAACTTTACAATTGTTGATAATGGTTACCGAGTTTTTGCCATGAGACATGGCAAGCGGGTACCTAAGCTCAACAGGCCTCCTGACCAACGGCGTGCACTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGAATCAAGACCACCAGAGCAAGAGCCAGTGCTGTGCGTAAGTATGTTGACAAAATGATCACGTTAGCAAAGGACGGTTCTTTGCATAAAAGGAGACAGGCTTTAGGCTTCATCTACGAAAAGCAGATTGTTCACGCTTTATTTGCCGAAGTCAAAGATAGGTATGGGGAGAGAAATGGTGGATATACCAGAATTTTAAGAACACTGCCTAGGCGAGGGGACAATGCGCCTATGGCATTCATTGAACTTGTCTGA

Coding sequence (CDS)

ATGGCAATGGCGATTACGACGGCGACGGCAACGGCGAACAGCCGGTGGAGCTTCTCGTCAATGAGGTCAGCGCTACCTTCTGTGGAAGTAGGAGTTCGTACTCCCTCTCGCGTCAGCTTCCCGTCGTCCAATGGTCGAGTCAGTGGCAGAACCTGCAGCAAACAGATTGCCTCTTTTTCGGGCTTGTGCCCTTTGAACCCTCTCATTTCTATTGGCTCATCAGATTACAACAGCTTTGAACAAAACTTTACAATTGTTGATAATGGTTACCGAGTTTTTGCCATGAGACATGGCAAGCGGGTACCTAAGCTCAACAGGCCTCCTGACCAACGGCGTGCACTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGAATCAAGACCACCAGAGCAAGAGCCAGTGCTGTGCGTAAGTATGTTGACAAAATGATCACGTTAGCAAAGGACGGTTCTTTGCATAAAAGGAGACAGGCTTTAGGCTTCATCTACGAAAAGCAGATTGTTCACGCTTTATTTGCCGAAGTCAAAGATAGGTATGGGGAGAGAAATGGTGGATATACCAGAATTTTAAGAACACTGCCTAGGCGAGGGGACAATGCGCCTATGGCATTCATTGAACTTGTCTGA

Protein sequence

MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFSGLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDRYGERNGGYTRILRTLPRRGDNAPMAFIELV

Homology

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BLAST of CmaCh06G001790 vs. ExPASy Swiss-Prot
Match: O80363 (50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.8e-76
Identity = 146/204 (71.57%), Postives = 171/204 (83.82%), Query Frame = 0


Query: 10  ATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRV---SGRTCSKQIASFSGLCPLN 69
           A+A++ WS S ++SALPS++    +  R S   S  R+     ++ S+ + SF GL PL+
Sbjct: 2   ASASTTWSMSCLKSALPSIQPISSSSLRFSCGPSPSRLRICKPKSSSRLLHSFVGLAPLH 61

Query: 70  PLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHG 129
           PL+S+ S D  SFE +FT++DNG RVFAMRHG++VPKLNRPPDQRRALLRGLTTQLLKHG
Sbjct: 62  PLLSLSSQDSTSFEHSFTVIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHG 121

Query: 130 RIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDRYGERNG 189
           RIKTT+ARA AVRKYVDKMIT+AKDGSLHKRRQALGFIYEKQIVHALFAEV DRYGERNG
Sbjct: 122 RIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNG 181

Query: 190 GYTRILRTLPRRGDNAPMAFIELV 211
           GYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 182 GYTRIIRTLPRRGDNAPMAYIELV 205

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BLAST of CmaCh06G001790 vs. ExPASy Swiss-Prot
Match: Q9M385 (50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.3e-76
Identity = 151/210 (71.90%), Postives = 172/210 (81.90%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60
           M+MA+ T T + +  WS SS++SALPS    +R PS  S      R+     S  + SFS
Sbjct: 5   MSMAMATPTDSVSRVWSMSSLKSALPST-ASLRLPSSSSRRPVTLRLP--ISSPSLPSFS 64

Query: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GL P+NPL+SIG  D+ SFE  F IVD G R++AMRHG+RVPKLNRPPDQR+ALLRGLTT
Sbjct: 65  GLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLTT 124

Query: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180
           QLLKHGRIKTTRARASA+RK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEV DR
Sbjct: 125 QLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDR 184

Query: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 211
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 185 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

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BLAST of CmaCh06G001790 vs. ExPASy Swiss-Prot
Match: P82194 (50S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 PE=1 SV=2)

HSP 1 Score: 221.5 bits (563), Expect = 9.1e-57
Identity = 106/126 (84.13%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 85  IVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDK 144
           ++DNG R FAM+HG+++ +L+RP DQRRALLRGLTTQLLKHGRIKTTRA+ASA+RKYVDK
Sbjct: 1   MIDNGGRFFAMKHGRKIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDK 60

Query: 145 MITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDRYGERNGGYTRILRTLPRRGDNAPM 204
           MITLAK+GSLHKRRQALGFIYEKQIVHALFAEV +RYG+RNGGYTRI+RTLPRRGDNAPM
Sbjct: 61  MITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPM 120

Query: 205 AFIELV 211
           A+IELV
Sbjct: 121 AYIELV 126

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BLAST of CmaCh06G001790 vs. ExPASy Swiss-Prot
Match: B1XJI3 (50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplQ PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.9e-42
Identity = 82/116 (70.69%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 95  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSL 154
           MRHG RVP+L RP DQR+ALLR LTTQL++HG++KTT+ARA AVR  VD+MITLAKDGSL
Sbjct: 1   MRHGCRVPELGRPADQRKALLRALTTQLIRHGQVKTTKARAKAVRSEVDRMITLAKDGSL 60

Query: 155 HKRRQALGFIYEKQIVHALFAEVKDRYGERNGGYTRILRTLPRRGDNAPMAFIELV 211
             RR+ALG++Y+K +VHALFA+ KDRYG+R GGY+R++RT+ RRGDNA MA IELV
Sbjct: 61  AARRRALGYMYDKDLVHALFAQAKDRYGDRQGGYSRVVRTVRRRGDNAEMAIIELV 116

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BLAST of CmaCh06G001790 vs. ExPASy Swiss-Prot
Match: B0C429 (50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplQ PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.1e-41
Identity = 83/115 (72.17%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 95  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSL 154
           MRH  RV KL +P DQR+ALLR L+TQL++HGR+ TT+ARA AVR  V+KMITLAKDGSL
Sbjct: 1   MRHRCRVHKLGKPADQRKALLRSLSTQLIRHGRVTTTKARAKAVRSQVEKMITLAKDGSL 60

Query: 155 HKRRQALGFIYEKQIVHALFAEVKDRYGERNGGYTRILRTLPRRGDNAPMAFIEL 210
             RRQALG+IY+KQ+VHALF +V DRYG+RNGGYTRI+RT+ RRGDNA MA IEL
Sbjct: 61  ASRRQALGYIYDKQLVHALFDQVADRYGDRNGGYTRIIRTIRRRGDNAEMAIIEL 115

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BLAST of CmaCh06G001790 vs. ExPASy TrEMBL
Match: A0A6J1I1G7 (50S ribosomal protein L17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470028 PE=3 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.3e-111
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60
           MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60

Query: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180
           QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 211
           YGERNGGYTRILRTLPRRGDNAPMAFIELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of CmaCh06G001790 vs. ExPASy TrEMBL
Match: A0A6J1GDC0 (50S ribosomal protein L17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452972 PE=3 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.3e-110
Identity = 208/210 (99.05%), Postives = 208/210 (99.05%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60
           MAMAITTATATANSRWSFSSMRSALP VEVGVRTPSRVSFPSSNGR SGRTCSKQIASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPFVEVGVRTPSRVSFPSSNGRASGRTCSKQIASFS 60

Query: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180
           QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 211
           YGERNGGYTRILRTLPRRGDNAPMAFIELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

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BLAST of CmaCh06G001790 vs. ExPASy TrEMBL
Match: A0A0A0L9N9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 4.2e-97
Identity = 184/210 (87.62%), Postives = 195/210 (92.86%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60
           M+MAITTATATAN RWSF+++RSALPSV   + T +RVSFP SN RVS RTCSK IASFS
Sbjct: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS GS+DYN FE NF IVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180
           QLLKHGRIKTTR RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 211
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210

[Close]

BLAST of CmaCh06G001790 vs. ExPASy TrEMBL
Match: A0A1S3B652 (50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.2e-93
Identity = 182/210 (86.67%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60
           MAMAIT  TATAN RWSF+++RSALPSV     T +RVSFP SN RVS RTCSK IASFS
Sbjct: 1   MAMAIT--TATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS GS+DYN FE NF IVDNG RVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180
           QLLKHGRIKTTR RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 211
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of CmaCh06G001790 vs. ExPASy TrEMBL
Match: A0A6J1DXR7 (50S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024059 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 8.2e-93
Identity = 177/210 (84.29%), Postives = 193/210 (91.90%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60
           MAMA T  TA  NSRWS +++R+ALPSV V + TP+RVSFPS+ GRVS RTCSK IASFS
Sbjct: 1   MAMAFT--TAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFS 60

Query: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS G SD++SFE NFTIVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180
           QLLKHGRIKTTRARASA+RKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 211
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

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BLAST of CmaCh06G001790 vs. NCBI nr
Match: XP_022971252.1 (50S ribosomal protein L17, chloroplastic [Cucurbita maxima] >KAG7027848.1 50S ribosomal protein L17, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 411.4 bits (1056), Expect = 4.7e-111
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60
           MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60

Query: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180
           QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 211
           YGERNGGYTRILRTLPRRGDNAPMAFIELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of CmaCh06G001790 vs. NCBI nr
Match: XP_023540903.1 (50S ribosomal protein L17, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 408.7 bits (1049), Expect = 3.1e-110
Identity = 208/210 (99.05%), Postives = 209/210 (99.52%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60
           MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGR SGRTCSKQIASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRASGRTCSKQIASFS 60

Query: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISIGSSDYNS+EQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSYEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180
           QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 211
           YGERNGGYTRILRTLPRRGDNAPMAFIELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of CmaCh06G001790 vs. NCBI nr
Match: XP_022949645.1 (50S ribosomal protein L17, chloroplastic [Cucurbita moschata])

HSP 1 Score: 407.5 bits (1046), Expect = 6.9e-110
Identity = 208/210 (99.05%), Postives = 208/210 (99.05%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60
           MAMAITTATATANSRWSFSSMRSALP VEVGVRTPSRVSFPSSNGR SGRTCSKQIASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPFVEVGVRTPSRVSFPSSNGRASGRTCSKQIASFS 60

Query: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180
           QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 211
           YGERNGGYTRILRTLPRRGDNAPMAFIELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of CmaCh06G001790 vs. NCBI nr
Match: XP_004137669.1 (50S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypothetical protein Csa_001558 [Cucumis sativus])

HSP 1 Score: 364.0 bits (933), Expect = 8.7e-97
Identity = 184/210 (87.62%), Postives = 195/210 (92.86%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60
           M+MAITTATATAN RWSF+++RSALPSV   + T +RVSFP SN RVS RTCSK IASFS
Sbjct: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS GS+DYN FE NF IVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180
           QLLKHGRIKTTR RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 211
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210

[Close]

BLAST of CmaCh06G001790 vs. NCBI nr
Match: XP_008442307.1 (PREDICTED: 50S ribosomal protein L17 [Cucumis melo])

HSP 1 Score: 351.7 bits (901), Expect = 4.5e-93
Identity = 182/210 (86.67%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60
           MAMAIT  TATAN RWSF+++RSALPSV     T +RVSFP SN RVS RTCSK IASFS
Sbjct: 1   MAMAIT--TATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS GS+DYN FE NF IVDNG RVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180
           QLLKHGRIKTTR RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 211
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of CmaCh06G001790 vs. TAIR 10
Match: AT3G54210.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 286.6 bits (732), Expect = 1.6e-77
Identity = 151/210 (71.90%), Postives = 172/210 (81.90%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60
           M+MA+ T T + +  WS SS++SALPS    +R PS  S      R+     S  + SFS
Sbjct: 5   MSMAMATPTDSVSRVWSMSSLKSALPST-ASLRLPSSSSRRPVTLRLP--ISSPSLPSFS 64

Query: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GL P+NPL+SIG  D+ SFE  F IVD G R++AMRHG+RVPKLNRPPDQR+ALLRGLTT
Sbjct: 65  GLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLTT 124

Query: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180
           QLLKHGRIKTTRARASA+RK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEV DR
Sbjct: 125 QLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDR 184

Query: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 211
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 185 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

[Close]

BLAST of CmaCh06G001790 vs. TAIR 10
Match: AT5G09770.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-23
Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 103 KLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALG 162
           KL RP   R ++LR + +QL+KH RI+TT  +A  VR+  D MI L K+GSL   R+A G
Sbjct: 6   KLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAARRAAG 65

Query: 163 FIYEKQIVHALFAEVKDRYGERNGGYTRILRTLPRRGDNAPMAFIELV 211
           F+    ++H +F E+  RY +R GGYTR+LRT  R GD APMA+IE +
Sbjct: 66  FVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFI 113

[Close]

BLAST of CmaCh06G001790 vs. TAIR 10
Match: AT5G64650.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 105.5 bits (262), Expect = 5.2e-23
Identity = 52/108 (48.15%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 103 KLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALG 162
           KL RP   R ++LR + +QL++H RI+TT  +A  VR+  D MI L K+GSL   R+A G
Sbjct: 6   KLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAARRAAG 65

Query: 163 FIYEKQIVHALFAEVKDRYGERNGGYTRILRTLPRRGDNAPMAFIELV 211
           F+    ++H +F E+  RY +R GGYTR+LRT  R GD APMA+IE +
Sbjct: 66  FVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFI 113

The following BLAST results are available for this feature:

BLAST of CmaCh06G001790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80363	1.8e-76	71.57	50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 P...	[more]
Q9M385	2.3e-76	71.90	50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
P82194	9.1e-57	84.13	50S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 P...	[more]
B1XJI3	4.9e-42	70.69	50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / P...	[more]
B0C429	4.1e-41	72.17	50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 ...	[more]

BLAST of CmaCh06G001790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I1G7	2.3e-111	100.00	50S ribosomal protein L17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1GDC0	3.3e-110	99.05	50S ribosomal protein L17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A0A0L9N9	4.2e-97	87.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1	[more]
A0A1S3B652	2.2e-93	86.67	50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1	[more]
A0A6J1DXR7	8.2e-93	84.29	50S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of CmaCh06G001790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971252.1	4.7e-111	100.00	50S ribosomal protein L17, chloroplastic [Cucurbita maxima] >KAG7027848.1 50S ri...	[more]
XP_023540903.1	3.1e-110	99.05	50S ribosomal protein L17, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022949645.1	6.9e-110	99.05	50S ribosomal protein L17, chloroplastic [Cucurbita moschata]	[more]
XP_004137669.1	8.7e-97	87.62	50S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypotheti...	[more]
XP_008442307.1	4.5e-93	86.67	PREDICTED: 50S ribosomal protein L17 [Cucumis melo]	[more]

BLAST of CmaCh06G001790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54210.1	1.6e-77	71.90	Ribosomal protein L17 family protein	[more]
AT5G09770.1	1.0e-23	49.07	Ribosomal protein L17 family protein	[more]
AT5G64650.1	5.2e-23	48.15	Ribosomal protein L17 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000456	Ribosomal protein L17	PFAM	PF01196	Ribosomal_L17	coord: 114..210 e-value: 1.0E-34 score: 119.4
IPR000456	Ribosomal protein L17	TIGRFAM	TIGR00059	TIGR00059	coord: 101..210 e-value: 9.1E-43 score: 143.1
IPR000456	Ribosomal protein L17	PANTHER	PTHR14413	RIBOSOMAL PROTEIN L17	coord: 46..210
IPR000456	Ribosomal protein L17	HAMAP	MF_01368	Ribosomal_L17	coord: 99..210 score: 26.270464
IPR036373	Ribosomal protein L17 superfamily	GENE3D	3.90.1030.10	Ribosomal protein L17	coord: 85..210 e-value: 1.1E-50 score: 172.9
IPR036373	Ribosomal protein L17 superfamily	SUPERFAMILY	64263	Prokaryotic ribosomal protein L17	coord: 95..210
None	No IPR available	PANTHER	PTHR14413:SF23	SUBFAMILY NOT NAMED	coord: 46..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G001790.1	CmaCh06G001790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome