CmaCh06G000980 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G000980
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	PAP_fibrillin domain-containing protein
Location	Cma_Chr06: 541867 .. 546153 (-)
RNA-Seq Expression	CmaCh06G000980
Synteny	CmaCh06G000980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGTCTCACTCACCCATCACCACTTTCTCTTGATTTGCTCTCTCCAAGGTGATTCTCCCCCCCAAAAAAATGTTTACGGTTGAGAAAATGGAGATGATCCTGCATTTCACTAGATTTTTCATTAGAGGGCACATTACTTTATGAATCCTCATTTTCTTAGAAGCAGGTAAATTTTTGATTCTCAGCCCTTGCAAAAGCGACTTAAAAAAGATGACACTAGATTTTTCACCTCTTTAACGTTTCTGTGTCATAATGATTTGTAATAGCCCAAGCTCACTAGCAGATATTATCCTTTTTTACTTTGCCTTTCAAGCTTTCTCTCGAGATTTTTAAAACGCATCTGCTTGGGAGAAATGTTTTGTTCTCCTCCTCAACTGATATGGGATCTCACAATCCACCTCACTTCAGGCCCTAGCGTCCTTGTTGACACTCGTTCCCTTCTCCAATCGATGTGGAACCATCCAATCTACCCCCCTTCGGAGCCCAGCGTCTTTGCTGGCACACCGCCTTGTGTCCACCTCCCTTCGGAGCTCAGCCGCACATCGCTCAATGTCTGGCTCTAATACCATTTGTAACCGCCAAAGCCCACCATCCTTTCATGCTTTCTCTCAAGGTTTTTAAAACACATCTGCTAGGGAGAAGTTCCGACACCCTTATAAAGAATATTTCGTTCTCCCTCAACCGATGTGGGATCGCACGTCATCATATGAATTCAGTCCCAAAACTCAGAGCATGGCAATCAAGATTTCTCAAGTTAAGCTGCAAAAGGGAGGAGGAGAACGTTATCTTTAGAATGAATCGCAGTTGAGATCAGTAAACCACATTGCTATGGAAGATATGGGGCCATAGATTAAAACCGAAAAAGAAAAAACCATAGCCTTTCTCTACTTCAATGAAGTTGCCAAGAGATTTGATTGCATGAACATTAAAAGTTCAACAAACAAATGGATACCACTTTTTTTAGCACAGCAACTTAGTGCCGCAGCTATGTCATTAATGAGATTAATGTACATTAATCTTATCACTGCTTCAGACAACTAATGTATGAGCAAAGAATTGTTTTGAAAACAAAAGATTCTGCCACCACCAAAATAGGATTTAAACCAAAATAATAGCATAGTCTCAGTCTCTCTAATGCTACGTCTAAGAGGCTTGTGTTAGATTTCATGTATTTTTCCCCTCAGCTTTTACAAGTAAACCATTGGGAAAGATAAATAGTAATTCTCTTCACAATCAACATGCTTTGATTTTTGACAGCTGATAAAACATTGATATAAAATGTTTCAAGTCAATAGCAATATAACGACTCAGATCCACCGCTAGCAGATATTATCCTCTTTGAGCTTTCCCTTTCGGGCTTTTCCTCAAGGCTTTAAAACGCGTCTGCTAGGGAAAGGTTTTCACACCCTTATAAAGAATGATTTGTTCTCCTCCCCAACCAATGTGGGACATCACAAGCCATGACAAGGGATAGCGGTTAAAAAGAATAAATATTGGGTAAAGTTGATCTCTGTACGATCCCATAACACCAAAATAAAAACAAATGAAAAAATAAAGAGTCATGTAAATGGTGGTTGACATATTTGTTTTAAGTATTACCTCCTTTGGAAACTCATCCAGAATGGTAGGTTTAAGTTTCAGGTTCCAACAATGACACTTCCTTGCCTTCCTCCAATCCCGGTACAGTACAAACTTCAAGACATTGTTTTCAAGACAAATTTTCACCTAATCCATAAAACACATTCTTCATGAAATTGCTTCTAAGTTCTACTTGGATAATGAATAAAAGCACAATGCTTAAACAGTTGCAACTTACATGCAAGATGAATAACTGAAAAGCTATTCAAAGTAAGGATTGGTCCAATTACATCCTAAATTGAGTTCAACCAAAACAATAAACACTAAACTTTTGAATTAACTGGGTGGAGATTTGAACCTCTGATATTTTGGTCAAGTATATATGTTATAACTAGTGGAGTGATGCTCACGTTTGCAAGTTCTGAATATTCTAAGATACCAGCACTCACCAAAAGGAAAAAGGAAATAAACAGATTAAAGGACTATAAAGCCAAGAATTATGATGTATTCATGGGTCGCAGAACAAAATCAATTTCCACCCAAACTTCTCATGGTATCAAACAGCTAATGAAATGAAAAGGGAAAACAAATACCAGGTAAATGAGGTTTCCAGTTAGAGACAAGTGAACTGAGTATCGTTTTCATCAAGTGGAGTCGAGCAAAGTAAATGTGACTGTATTACTGGCCCTTGTACGGTTCATCCTACATCAAAACACAAATATCGGGGAGATTTCTCCCAGTTCCGCCATTTTTCCAGCCTTCTCGATCAACGTTTACTCAAAAAGTGAAGCAAATGAAATGAGCAAATAGCGAAGGAAAATTCTTCGCAATTCCAAAGTAGCCAAGCTGGGCGAAGAAAAATGTCGTGAAATCCAAAATCCTTTTGAGGAAATGAACAGCGATCTAAGAAATAGAAGAGGCAAAGAGGTACCGATAGATCATAGGGACATTGCTTGCGCTGGAGAATCTTCTGTGAGTCGATTTCCATGGCGAGGAAGAGAACGAACAGAGCACAAGAATTTTACTCTTCGAATCTCAATTGGTGAGGAGGTTATTGTTCTGCTGCTTATAAATTGGCGCAATTTTCAGCCATTTTAATTGTCTAATAAAAATATAGATCACAGCGTATAAAATTAATATTACAAAAATTAATTAGAAAAATCTTTGTTTTATTTCTTTTTTCCTTTTCTGAGAAAAGAAACAAATAAACTATTTTAATATATATATATATATAATCTGCAGAGAGACGCGGGTTCGGCAATTCATTGGCCCAGGCGACGCTCTCCGTTGGAGAAATAAGGCCGCAGATTTCTCTCCCATCGCCTCACTCCTCCTCCTCTACACTCTTCTCTTCCTGCAGTCTCTTCGATTCGCCCCGTCGTTCACCGTCGGTTTCTCCCAACTGCGCAGCTTCCTTGGGGTTTGACTCCGGGCTGCATTCCACTGGACGCAGACGGATTTGTATAGCTATGGTTCAGCAGGCAGCTCAAGGAGCTCCGGTGATTTATGCTAAGGAGATGGAGAGACTCTCTGCTAAAGAATCGCTGCTGTTGCCTGTGAGTATCGGTGTTTGAGTTTCTTCATGTTTTAAAGTATTGTTGATTTGTTTCGCTTCAACTATCGCGATGGTAGTAGAGCATAGTATAGACTGAAAATTATGTATGCATATCGATGATTTTTTTTTGATGTTCATGTTCCTTTATTCCGTGAAGTATACATTTCGTAGTGAAAATTGAAAACATGCTTGATTTAATCGTGTCTTATTGTCGAGAAGCTACTTTGTGTCAATTTGAATCTAACCTAGTATGTAGTTTGACCTTTTCCGCTAAATACTACTAAGAAACTTGTAACATTTTTCCTGGAACTGAGAAAGTTGGTTGAAGATTTGAATTAAGAATGGCTCCGATATCAATTTGTGATGGTTGGCCGCGAAGAGATTTAATCTCAAGTTAGAAAAAGAGAAATCAAATAACTCACTCATAACCAAGGTTTTGCAAGAATAGAAAATAGAGAGACTGAGACAAAAAGTTTAATTGGTATGCATTCTGGTGAGGATATCCCACACACAATAAGAACAAAAGCAATTTTGTTTATTTCCCGAAGAGAAATTAGCAGAGCGATGAGCAAGAAGATGATCCCCCCTTACATCCTTCTTATAAATAGTAAAGGTATCGTCAACTGACGCAAAATTGTTTCAACAAAAAATAGTTAGTATTCTGTTTAAACTGAGGGGAAAAGAACAAGCGAAACTGCCACATTCCTGAACGAGATAGTTGGAAGAAACGCATCCTCTCCTTGCATCCGTTATCTTCTCAATTATTTCTTATGGTCTAACGTTTCGTAGGTTTGAATTTTTTCAATAGAATGTGTGTCTACCTGCTCTTCTTGTTGGTTCGAGACATCATAATGTTTGAACTCGAGAAGTCGAGCGGAATGGGAGACTGGCCCAATCTGTTAGCTACCTTTCCAGAACATCTGTTAGTCTTTATTCTCTAGTTTGAAACTCATGCAAGTTTTATGTGTACAAATTTATGCACTCCGTCGAGTGCAACTGATCGTGATATGTGAATTTGTGGCTGCTGTTTGTTGAACGAAGTGGTCTTCAGTATTTAGTGAATTATATTGGTTTAATCAGAATTATATTGCTTTAATAGTTGATTGCAAGTTTTTTATCCAGATAACTACTCATCAACCCATACCATAA

mRNA sequence

ATGGCCAGTCTCACTCACCCATCACCACTTTCTCTTGATTTGCTCTCTCCAAGGAAAATTCTTCGCAATTCCAAAGTAGCCAAGCTGGGCGAAGAAAAATGTCGTGAAATCCAAAATCCTTTTGAGGAAATGAACAGCGATCTAAGAAATAGAAGAGGCAAAGAGGTACCGATAGATCATAGGGACATTGCTTGCGCTGGAGAATCTTCTGTGAGTCGATTTCCATGGCGAGGAAGAGAACGAACAGAGCACAAGAATTTTACTCTTCGAATCTCAATTGAGAGACGCGGGTTCGGCAATTCATTGGCCCAGGCGACGCTCTCCGTTGGAGAAATAAGGCCGCAGATTTCTCTCCCATCGCCTCACTCCTCCTCCTCTACACTCTTCTCTTCCTGCAGTCTCTTCGATTCGCCCCGTCGTTCACCGTCGGTTTCTCCCAACTGCGCAGCTTCCTTGGGGTTTGACTCCGGGCTGCATTCCACTGGACGCAGACGGATTTGTATAGCTATGGTTCAGCAGGCAGCTCAAGGAGCTCCGGTGATTTATGCTAAGGAGATGGAGAGACTCTCTGCTAAAGAATCGCTGCTGTTGCCTATAACTACTCATCAACCCATACCATAA

Coding sequence (CDS)

ATGGCCAGTCTCACTCACCCATCACCACTTTCTCTTGATTTGCTCTCTCCAAGGAAAATTCTTCGCAATTCCAAAGTAGCCAAGCTGGGCGAAGAAAAATGTCGTGAAATCCAAAATCCTTTTGAGGAAATGAACAGCGATCTAAGAAATAGAAGAGGCAAAGAGGTACCGATAGATCATAGGGACATTGCTTGCGCTGGAGAATCTTCTGTGAGTCGATTTCCATGGCGAGGAAGAGAACGAACAGAGCACAAGAATTTTACTCTTCGAATCTCAATTGAGAGACGCGGGTTCGGCAATTCATTGGCCCAGGCGACGCTCTCCGTTGGAGAAATAAGGCCGCAGATTTCTCTCCCATCGCCTCACTCCTCCTCCTCTACACTCTTCTCTTCCTGCAGTCTCTTCGATTCGCCCCGTCGTTCACCGTCGGTTTCTCCCAACTGCGCAGCTTCCTTGGGGTTTGACTCCGGGCTGCATTCCACTGGACGCAGACGGATTTGTATAGCTATGGTTCAGCAGGCAGCTCAAGGAGCTCCGGTGATTTATGCTAAGGAGATGGAGAGACTCTCTGCTAAAGAATCGCTGCTGTTGCCTATAACTACTCATCAACCCATACCATAA

Protein sequence

MASLTHPSPLSLDLLSPRKILRNSKVAKLGEEKCREIQNPFEEMNSDLRNRRGKEVPIDHRDIACAGESSVSRFPWRGRERTEHKNFTLRISIERRGFGNSLAQATLSVGEIRPQISLPSPHSSSSTLFSSCSLFDSPRRSPSVSPNCAASLGFDSGLHSTGRRRICIAMVQQAAQGAPVIYAKEMERLSAKESLLLPITTHQPIP

Homology

[Close]

BLAST of CmaCh06G000980 vs. ExPASy Swiss-Prot
Match: Q9M2P7 (Probable plastid-lipid-associated protein 9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP9 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-07
Identity = 38/78 (48.72%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 120 SPHSSSSTLFSSCSLFDSPRRSPSVSPNCAASLGFDSGLHSTGRRRICIAMVQQAAQGAP 179
           S   +S+   S  S    P  SP +S     SL F S   S  RR IC AMVQ + QG P
Sbjct: 8   SVSGTSAVRLSFSSSVSPPSSSPPLS---RVSLNFQSEKKSCYRRMICRAMVQDSVQGIP 67

Query: 180 VIYAKEMERLSAKESLLL 198
            +YA+EMERLSAKESL+L
Sbjct: 68  SVYAREMERLSAKESLIL 82

[Close]

BLAST of CmaCh06G000980 vs. ExPASy Swiss-Prot
Match: Q8S9M1 (Probable plastid-lipid-associated protein 13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP13 PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 3.2e-06
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 141 SPSVSPN--CAASLGFDSGLHSTGRRRICIAMVQQAAQGAPVIYAKEMERLSAKESLLLP 200
           S S SP+  C        G  ++ RRR+  AMVQ+  QG+P++YA+EMERLSAKESLLL 
Sbjct: 19  STSASPSRFCLNVPVVKQGWKNSCRRRVLRAMVQETVQGSPLVYAREMERLSAKESLLLA 78

[Close]

BLAST of CmaCh06G000980 vs. ExPASy TrEMBL
Match: A0A6J1I3P6 (uncharacterized protein LOC111470266 OS=Cucurbita maxima OX=3661 GN=LOC111470266 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 7.8e-80
Identity = 155/157 (98.73%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 44  MNSDLRNRRGKEVPIDHRDIACAGESSVSRFPWRGRERTEHKNFTLRISIERRGFGNSLA 103
           MNSDLRNRRGKEVPIDHRDIACAGESSVSRFPWRGRERTEHKNFTLRISIERRGFGNSLA
Sbjct: 1   MNSDLRNRRGKEVPIDHRDIACAGESSVSRFPWRGRERTEHKNFTLRISIERRGFGNSLA 60

Query: 104 QATLSVGEIRPQISLPSPHSSSSTLFSSCSLFDSPRRSPSVSPNCAASLGFDSGLHSTGR 163
           QATLSVGEIRPQISLPSPHSSSSTLFSSCSLFDSPRRSPSVSPNCAASLGFDSGLHSTGR
Sbjct: 61  QATLSVGEIRPQISLPSPHSSSSTLFSSCSLFDSPRRSPSVSPNCAASLGFDSGLHSTGR 120

Query: 164 RRICIAMVQQAAQGAPVIYAKEMERLSAKESLLLPIT 201
           RRICIAMVQQAAQGAPVIYAKEMERLSAKESLLLP++
Sbjct: 121 RRICIAMVQQAAQGAPVIYAKEMERLSAKESLLLPVS 157

[Close]

BLAST of CmaCh06G000980 vs. ExPASy TrEMBL
Match: A0A6J1FAY5 (probable plastid-lipid-associated protein 13, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111442416 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-10
Identity = 45/65 (69.23%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 139 RRSPSVSPNCAASLGFDSGLHSTG------RRRICIAMVQQAAQGAPVIYAKEMERLSAK 198
           RRSP VSPN   SL   S L S G      RRR C AMVQQAAQG+P IYAKEMERLSAK
Sbjct: 17  RRSPLVSPNTLTSLALQSRLPSNGRCRRILRRRFCRAMVQQAAQGSPAIYAKEMERLSAK 76

[Close]

BLAST of CmaCh06G000980 vs. ExPASy TrEMBL
Match: A0A6J1J667 (probable plastid-lipid-associated protein 13, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481708 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 43/65 (66.15%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 139 RRSPSVSPNCAASLGFDSGLHSTG------RRRICIAMVQQAAQGAPVIYAKEMERLSAK 198
           RR P VSP+   SL   S L S G      RRR C AMVQQAAQG+P IYAKEMERLSAK
Sbjct: 17  RRPPLVSPSTLTSLALQSRLPSNGRCRRILRRRFCRAMVQQAAQGSPAIYAKEMERLSAK 76

[Close]

BLAST of CmaCh06G000980 vs. ExPASy TrEMBL
Match: A0A6J1J6M8 (probable plastid-lipid-associated protein 13, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481708 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 43/65 (66.15%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 139 RRSPSVSPNCAASLGFDSGLHSTG------RRRICIAMVQQAAQGAPVIYAKEMERLSAK 198
           RR P VSP+   SL   S L S G      RRR C AMVQQAAQG+P IYAKEMERLSAK
Sbjct: 17  RRPPLVSPSTLTSLALQSRLPSNGRCRRILRRRFCRAMVQQAAQGSPAIYAKEMERLSAK 76

[Close]

BLAST of CmaCh06G000980 vs. ExPASy TrEMBL
Match: A0A0A0LEF9 (PAP_fibrillin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G807340 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.5e-09
Identity = 50/86 (58.14%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 118 LPSPHSSSSTLFSSCSLFDSPRRSPSVSPNCAASLGFDSGLHSTGR------RRICIAMV 177
           + SPH+S     SS S   SP RSP +S N   S    S   S GR      RR+C AMV
Sbjct: 1   MASPHAS----ISSLSSIRSP-RSPPLSSNAVPSFLLHSRFPSGGRCRRLLCRRLCRAMV 60

Query: 178 QQAAQGAPVIYAKEMERLSAKESLLL 198
           QQAAQGAP IYAKEMERLSAKESLLL
Sbjct: 61  QQAAQGAPAIYAKEMERLSAKESLLL 81

[Close]

BLAST of CmaCh06G000980 vs. NCBI nr
Match: XP_022971591.1 (uncharacterized protein LOC111470266 [Cucurbita maxima])

HSP 1 Score: 306.6 bits (784), Expect = 1.6e-79
Identity = 155/157 (98.73%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 44  MNSDLRNRRGKEVPIDHRDIACAGESSVSRFPWRGRERTEHKNFTLRISIERRGFGNSLA 103
           MNSDLRNRRGKEVPIDHRDIACAGESSVSRFPWRGRERTEHKNFTLRISIERRGFGNSLA
Sbjct: 1   MNSDLRNRRGKEVPIDHRDIACAGESSVSRFPWRGRERTEHKNFTLRISIERRGFGNSLA 60

Query: 104 QATLSVGEIRPQISLPSPHSSSSTLFSSCSLFDSPRRSPSVSPNCAASLGFDSGLHSTGR 163
           QATLSVGEIRPQISLPSPHSSSSTLFSSCSLFDSPRRSPSVSPNCAASLGFDSGLHSTGR
Sbjct: 61  QATLSVGEIRPQISLPSPHSSSSTLFSSCSLFDSPRRSPSVSPNCAASLGFDSGLHSTGR 120

Query: 164 RRICIAMVQQAAQGAPVIYAKEMERLSAKESLLLPIT 201
           RRICIAMVQQAAQGAPVIYAKEMERLSAKESLLLP++
Sbjct: 121 RRICIAMVQQAAQGAPVIYAKEMERLSAKESLLLPVS 157

[Close]

BLAST of CmaCh06G000980 vs. NCBI nr
Match: XP_038904664.1 (probable plastid-lipid-associated protein 13, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 7.2e-11
Identity = 53/86 (61.63%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 118 LPSPHSSSSTLFSSCSLFDSPRRSPSVSPNCAASLGFDSGLHSTG------RRRICIAMV 177
           + SPH+S  +L S  S     RRSP VSPN  ASL   S L   G      RRR+C AMV
Sbjct: 1   MASPHASLPSLSSIRS-----RRSPPVSPNIVASLVLHSRLPFGGRCRRLLRRRLCRAMV 60

Query: 178 QQAAQGAPVIYAKEMERLSAKESLLL 198
           QQAAQGAP IYAKEMERLSAKESLLL
Sbjct: 61  QQAAQGAPAIYAKEMERLSAKESLLL 81

[Close]

BLAST of CmaCh06G000980 vs. NCBI nr
Match: XP_023529066.1 (probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-10
Identity = 45/65 (69.23%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 139 RRSPSVSPNCAASLGFDSGLHSTG------RRRICIAMVQQAAQGAPVIYAKEMERLSAK 198
           RRSP VSPN   SL   S L S G      RRR C AMVQQAAQG+P IYAKEMERLSAK
Sbjct: 17  RRSPLVSPNTLTSLALQSRLPSNGRCRRILRRRFCRAMVQQAAQGSPAIYAKEMERLSAK 76

[Close]

BLAST of CmaCh06G000980 vs. NCBI nr
Match: XP_022935588.1 (probable plastid-lipid-associated protein 13, chloroplastic [Cucurbita moschata])

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-10
Identity = 45/65 (69.23%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 139 RRSPSVSPNCAASLGFDSGLHSTG------RRRICIAMVQQAAQGAPVIYAKEMERLSAK 198
           RRSP VSPN   SL   S L S G      RRR C AMVQQAAQG+P IYAKEMERLSAK
Sbjct: 17  RRSPLVSPNTLTSLALQSRLPSNGRCRRILRRRFCRAMVQQAAQGSPAIYAKEMERLSAK 76

[Close]

BLAST of CmaCh06G000980 vs. NCBI nr
Match: XP_023529065.1 (probable plastid-lipid-associated protein 13, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-10
Identity = 45/65 (69.23%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 139 RRSPSVSPNCAASLGFDSGLHSTG------RRRICIAMVQQAAQGAPVIYAKEMERLSAK 198
           RRSP VSPN   SL   S L S G      RRR C AMVQQAAQG+P IYAKEMERLSAK
Sbjct: 17  RRSPLVSPNTLTSLALQSRLPSNGRCRRILRRRFCRAMVQQAAQGSPAIYAKEMERLSAK 76

[Close]

BLAST of CmaCh06G000980 vs. TAIR 10
Match: AT3G58010.1 (plastoglobulin 34kD )

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-08
Identity = 38/78 (48.72%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 120 SPHSSSSTLFSSCSLFDSPRRSPSVSPNCAASLGFDSGLHSTGRRRICIAMVQQAAQGAP 179
           S   +S+   S  S    P  SP +S     SL F S   S  RR IC AMVQ + QG P
Sbjct: 8   SVSGTSAVRLSFSSSVSPPSSSPPLS---RVSLNFQSEKKSCYRRMICRAMVQDSVQGIP 67

Query: 180 VIYAKEMERLSAKESLLL 198
            +YA+EMERLSAKESL+L
Sbjct: 68  SVYAREMERLSAKESLIL 82

[Close]

BLAST of CmaCh06G000980 vs. TAIR 10
Match: AT2G42130.1 (Plastid-lipid associated protein PAP / fibrillin family protein )

HSP 1 Score: 53.5 bits (127), Expect = 2.3e-07
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 141 SPSVSPN--CAASLGFDSGLHSTGRRRICIAMVQQAAQGAPVIYAKEMERLSAKESLLLP 200
           S S SP+  C        G  ++ RRR+  AMVQ+  QG+P++YA+EMERLSAKESLLL 
Sbjct: 19  STSASPSRFCLNVPVVKQGWKNSCRRRVLRAMVQETVQGSPLVYAREMERLSAKESLLLA 78

[Close]

BLAST of CmaCh06G000980 vs. TAIR 10
Match: AT2G42130.4 (Plastid-lipid associated protein PAP / fibrillin family protein )

HSP 1 Score: 53.5 bits (127), Expect = 2.3e-07
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 141 SPSVSPN--CAASLGFDSGLHSTGRRRICIAMVQQAAQGAPVIYAKEMERLSAKESLLLP 200
           S S SP+  C        G  ++ RRR+  AMVQ+  QG+P++YA+EMERLSAKESLLL 
Sbjct: 19  STSASPSRFCLNVPVVKQGWKNSCRRRVLRAMVQETVQGSPLVYAREMERLSAKESLLLA 78

[Close]

BLAST of CmaCh06G000980 vs. TAIR 10
Match: AT2G42130.2 (Plastid-lipid associated protein PAP / fibrillin family protein )

HSP 1 Score: 53.5 bits (127), Expect = 2.3e-07
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 141 SPSVSPN--CAASLGFDSGLHSTGRRRICIAMVQQAAQGAPVIYAKEMERLSAKESLLLP 200
           S S SP+  C        G  ++ RRR+  AMVQ+  QG+P++YA+EMERLSAKESLLL 
Sbjct: 19  STSASPSRFCLNVPVVKQGWKNSCRRRVLRAMVQETVQGSPLVYAREMERLSAKESLLLA 78

[Close]

BLAST of CmaCh06G000980 vs. TAIR 10
Match: AT2G42130.3 (Plastid-lipid associated protein PAP / fibrillin family protein )

HSP 1 Score: 46.2 bits (108), Expect = 3.7e-05
Identity = 21/28 (75.00%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 170 MVQQAAQGAPVIYAKEMERLSAKESLLL 198
           MVQ+  QG+P++YA+EMERLSAKESLLL
Sbjct: 1   MVQETVQGSPLVYAREMERLSAKESLLL 28

The following BLAST results are available for this feature:

BLAST of CmaCh06G000980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2P7	1.7e-07	48.72	Probable plastid-lipid-associated protein 9, chloroplastic OS=Arabidopsis thalia...	[more]
Q8S9M1	3.2e-06	50.82	Probable plastid-lipid-associated protein 13, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of CmaCh06G000980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I3P6	7.8e-80	98.73	uncharacterized protein LOC111470266 OS=Cucurbita maxima OX=3661 GN=LOC111470266...	[more]
A0A6J1FAY5	1.0e-10	69.23	probable plastid-lipid-associated protein 13, chloroplastic OS=Cucurbita moschat...	[more]
A0A6J1J667	1.5e-09	66.15	probable plastid-lipid-associated protein 13, chloroplastic isoform X2 OS=Cucurb...	[more]
A0A6J1J6M8	1.5e-09	66.15	probable plastid-lipid-associated protein 13, chloroplastic isoform X1 OS=Cucurb...	[more]
A0A0A0LEF9	5.5e-09	58.14	PAP_fibrillin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G8073...	[more]

BLAST of CmaCh06G000980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971591.1	1.6e-79	98.73	uncharacterized protein LOC111470266 [Cucurbita maxima]	[more]
XP_038904664.1	7.2e-11	61.63	probable plastid-lipid-associated protein 13, chloroplastic isoform X1 [Benincas...	[more]
XP_023529066.1	2.1e-10	69.23	probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Cucurbit...	[more]
XP_022935588.1	2.1e-10	69.23	probable plastid-lipid-associated protein 13, chloroplastic [Cucurbita moschata]	[more]
XP_023529065.1	2.1e-10	69.23	probable plastid-lipid-associated protein 13, chloroplastic isoform X1 [Cucurbit...	[more]

BLAST of CmaCh06G000980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58010.1	1.2e-08	48.72	plastoglobulin 34kD	[more]
AT2G42130.1	2.3e-07	50.82	Plastid-lipid associated protein PAP / fibrillin family protein	[more]
AT2G42130.4	2.3e-07	50.82	Plastid-lipid associated protein PAP / fibrillin family protein	[more]
AT2G42130.2	2.3e-07	50.82	Plastid-lipid associated protein PAP / fibrillin family protein	[more]
AT2G42130.3	3.7e-05	75.00	Plastid-lipid associated protein PAP / fibrillin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31906:SF22	PLASTID-LIPID-ASSOCIATED PROTEIN 9, CHLOROPLASTIC-RELATED	coord: 139..198
IPR039633	Plastid-lipid-associated protein	PANTHER	PTHR31906	FAMILY NOT NAMED	coord: 139..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G000980.1	CmaCh06G000980.1	mRNA