CmaCh05G013990 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G013990
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	heat stress transcription factor A-7a-like
Location	Cma_Chr05: 10445228 .. 10446988 (+)
RNA-Seq Expression	CmaCh05G013990
Synteny	CmaCh05G013990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTTTCAGTAGCGATTAGACGTTTCCACTGAGATCTATCAACCTTATCGGAAACAATTTCTCTGCGGTTTATTACGCTTGAGTGAATATGATTAACCAAACAATCCTCTCTGACGGTGGCGGTGGCTGCCCCGACGGCGCTGCAACTGCAAGCGGTGACATCATGGATCAAAGGACTGTCAAGGAAGAGGAGATAGAAGTAAGCGCAGGGACGATGGAGGGCGGGGGAGGCGAATCTGATAGCGGCGGTGATGGGGTTTCGGCGTCATCGGCGACGGCGAAACCAATGGAAGGGTTGCATGAGGTGGGGCCGGCGCCGTTCCTGAAGAAGACGTATGAGATGGTGGAGGATCCGGAAACCGACCCGGTTGTATCTTGGAGCGAAGGTGGTAATAGCTTCATTGTTTGGGATTCTCATAAACTCTCCATCACTCTTCTCCCCAAATACTTCAAGCACTCCAATTTCTCCAGCTTCATCCGCCAGCTCAACACTTATGTCAGTATAACCCAATTTAATTTATTGCCAATTTTCTTATTTATTTTAACATCCCAATCCTGAAATACAATTTATATATTTTTTTTCAGAAATATTATTTTATACATTAAGAACCAATTCCAAACAACTACTTGGTATGCTTATAGTGACAAAAGTGAAGACTGGATTTCAATTCCAAGTTTTTGATTTGTTCTGTTTGATAACCATTTTGTTACGTTCATAATCGTATATATTAAGCTGTTGCTCATTTTAAATTTTTGAGATTTGACTTGAATTTTGAAAATATTTTAAGAACGTTCCGGGAAGAAGTAATTTATAAGCTTAATACATGGATAACCCATGAAAGAAATTCATGGATTTTCGAGGTGGATATGGTTGCAGGGTTTTAGGAAGATTGATAGTGATAAATGGGAGTTTGCAAATGAAGGATTTCAAGGAGGGAAGAAGCATTTATTGAAGAACATAAAAAGAAGAAGCAGGTACAACAATTACAAGCAGCAGCAACATCATTTGGGCATGCCCATGGGCTTACAGGATTTGACAAAGCATCCACTTGTGGAAGCAGAACTGCACGCTTTGAAGTCCGACAACCAGGTTTTGAGAGTAGAGATGTTGAAACTGAGAGAGCAGCAGCATGACTCACAGAACCAGCTCACCATGGTTGAAGACCGAGTCCGATGCGTCGAGTCCAAGCACCAACAGATGCTGTCTTTTGTCTCTAAAATGTCGAGAAACCCCGGGTTTTGTCGACAGTTGGTGCAGAGGAGAATGCTGAGGAAGAAGCTGATGAACAATGGGGATGAGTTTGGAAACAACAGAAGGTTACTTGCAATGCAAGGCCATCAAAATCTCAGCCACTCTGAACTGGTCAGTACTGAAATGTTTCCACACGTTATCGAACCCGGTCCGGCCGTGCTTGAGCAGCCGGTCCGAGCCTCCACAATGGTGGTTGACGAAGACAGTGACTCCAAATTCTTTCTGGAATTGGAGGATCTCATCAAGAAGCCTCCTCCTCCTCCTACTACTACTCAGGATTGCCCCTCAGGTTATGTACAGCAACAAGCTTTCCATGGATTTGTTGGATCCATTCCATGAGTTCCCCATTGTATATAAAATTTGCTACTAAGTCCTATACTCTTCAAAATTTGCAATATTGCCTTTACTCTTTCTCGAATTTTTCTATTGGAGTGGCATCTTTGTAATATACTTGAGAAGTGTGTGGTTGTAAGTAGTTTAATTAATATTCAAATAACCATAAACACAA

mRNA sequence

CCATTTTCAGTAGCGATTAGACGTTTCCACTGAGATCTATCAACCTTATCGGAAACAATTTCTCTGCGGTTTATTACGCTTGAGTGAATATGATTAACCAAACAATCCTCTCTGACGGTGGCGGTGGCTGCCCCGACGGCGCTGCAACTGCAAGCGGTGACATCATGGATCAAAGGACTGTCAAGGAAGAGGAGATAGAAGTAAGCGCAGGGACGATGGAGGGCGGGGGAGGCGAATCTGATAGCGGCGGTGATGGGGTTTCGGCGTCATCGGCGACGGCGAAACCAATGGAAGGGTTGCATGAGGTGGGGCCGGCGCCGTTCCTGAAGAAGACGTATGAGATGGTGGAGGATCCGGAAACCGACCCGGTTGTATCTTGGAGCGAAGGTGGTAATAGCTTCATTGTTTGGGATTCTCATAAACTCTCCATCACTCTTCTCCCCAAATACTTCAAGCACTCCAATTTCTCCAGCTTCATCCGCCAGCTCAACACTTATGGTTTTAGGAAGATTGATAGTGATAAATGGGAGTTTGCAAATGAAGGATTTCAAGGAGGGAAGAAGCATTTATTGAAGAACATAAAAAGAAGAAGCAGGTACAACAATTACAAGCAGCAGCAACATCATTTGGGCATGCCCATGGGCTTACAGGATTTGACAAAGCATCCACTTGTGGAAGCAGAACTGCACGCTTTGAAGTCCGACAACCAGGTTTTGAGAGTAGAGATGTTGAAACTGAGAGAGCAGCAGCATGACTCACAGAACCAGCTCACCATGGTTGAAGACCGAGTCCGATGCGTCGAGTCCAAGCACCAACAGATGCTGTCTTTTGTCTCTAAAATGTCGAGAAACCCCGGGTTTTGTCGACAGTTGGTGCAGAGGAGAATGCTGAGGAAGAAGCTGATGAACAATGGGGATGAGTTTGGAAACAACAGAAGGTTACTTGCAATGCAAGGCCATCAAAATCTCAGCCACTCTGAACTGGTCAGTACTGAAATGTTTCCACACGTTATCGAACCCGGTCCGGCCGTGCTTGAGCAGCCGGTCCGAGCCTCCACAATGGTGGTTGACGAAGACAGTGACTCCAAATTCTTTCTGGAATTGGAGGATCTCATCAAGAAGCCTCCTCCTCCTCCTACTACTACTCAGGATTGCCCCTCAGGTTATGTACAGCAACAAGCTTTCCATGGATTTGTTGGATCCATTCCATGAGTTCCCCATTGTATATAAAATTTGCTACTAAGTCCTATACTCTTCAAAATTTGCAATATTGCCTTTACTCTTTCTCGAATTTTTCTATTGGAGTGGCATCTTTGTAATATACTTGAGAAGTGTGTGGTTGTAAGTAGTTTAATTAATATTCAAATAACCATAAACACAA

Coding sequence (CDS)

ATGATTAACCAAACAATCCTCTCTGACGGTGGCGGTGGCTGCCCCGACGGCGCTGCAACTGCAAGCGGTGACATCATGGATCAAAGGACTGTCAAGGAAGAGGAGATAGAAGTAAGCGCAGGGACGATGGAGGGCGGGGGAGGCGAATCTGATAGCGGCGGTGATGGGGTTTCGGCGTCATCGGCGACGGCGAAACCAATGGAAGGGTTGCATGAGGTGGGGCCGGCGCCGTTCCTGAAGAAGACGTATGAGATGGTGGAGGATCCGGAAACCGACCCGGTTGTATCTTGGAGCGAAGGTGGTAATAGCTTCATTGTTTGGGATTCTCATAAACTCTCCATCACTCTTCTCCCCAAATACTTCAAGCACTCCAATTTCTCCAGCTTCATCCGCCAGCTCAACACTTATGGTTTTAGGAAGATTGATAGTGATAAATGGGAGTTTGCAAATGAAGGATTTCAAGGAGGGAAGAAGCATTTATTGAAGAACATAAAAAGAAGAAGCAGGTACAACAATTACAAGCAGCAGCAACATCATTTGGGCATGCCCATGGGCTTACAGGATTTGACAAAGCATCCACTTGTGGAAGCAGAACTGCACGCTTTGAAGTCCGACAACCAGGTTTTGAGAGTAGAGATGTTGAAACTGAGAGAGCAGCAGCATGACTCACAGAACCAGCTCACCATGGTTGAAGACCGAGTCCGATGCGTCGAGTCCAAGCACCAACAGATGCTGTCTTTTGTCTCTAAAATGTCGAGAAACCCCGGGTTTTGTCGACAGTTGGTGCAGAGGAGAATGCTGAGGAAGAAGCTGATGAACAATGGGGATGAGTTTGGAAACAACAGAAGGTTACTTGCAATGCAAGGCCATCAAAATCTCAGCCACTCTGAACTGGTCAGTACTGAAATGTTTCCACACGTTATCGAACCCGGTCCGGCCGTGCTTGAGCAGCCGGTCCGAGCCTCCACAATGGTGGTTGACGAAGACAGTGACTCCAAATTCTTTCTGGAATTGGAGGATCTCATCAAGAAGCCTCCTCCTCCTCCTACTACTACTCAGGATTGCCCCTCAGGTTATGTACAGCAACAAGCTTTCCATGGATTTGTTGGATCCATTCCATGA

Protein sequence

MINQTILSDGGGGCPDGAATASGDIMDQRTVKEEEIEVSAGTMEGGGGESDSGGDGVSASSATAKPMEGLHEVGPAPFLKKTYEMVEDPETDPVVSWSEGGNSFIVWDSHKLSITLLPKYFKHSNFSSFIRQLNTYGFRKIDSDKWEFANEGFQGGKKHLLKNIKRRSRYNNYKQQQHHLGMPMGLQDLTKHPLVEAELHALKSDNQVLRVEMLKLREQQHDSQNQLTMVEDRVRCVESKHQQMLSFVSKMSRNPGFCRQLVQRRMLRKKLMNNGDEFGNNRRLLAMQGHQNLSHSELVSTEMFPHVIEPGPAVLEQPVRASTMVVDEDSDSKFFLELEDLIKKPPPPPTTTQDCPSGYVQQQAFHGFVGSIP

Homology

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BLAST of CmaCh05G013990 vs. ExPASy Swiss-Prot
Match: O80982 (Heat stress transcription factor A-2 OS=Arabidopsis thaliana OX=3702 GN=HSFA2 PE=1 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.2e-59
Identity = 144/331 (43.50%), Postives = 199/331 (60.12%), Query Frame = 0


Query: 31  VKEEEIEVSAGTMEGGGGESDSGGDGVSASSATAKPMEGLHEVGPAPFLKKTYEMVEDPE 90
           ++E ++E+   T+   G  + S   G   SS++ +PMEGL+E GP PFL KTYEMVEDP 
Sbjct: 1   MEELKVEMEEETVTFTGSVAASSSVG---SSSSPRPMEGLNETGPPPFLTKTYEMVEDPA 60

Query: 91  TDPVVSWSEGGNSFIVWDSHKLSITLLPKYFKHSNFSSFIRQLNTYGFRKIDSDKWEFAN 150
           TD VVSWS G NSF+VWDSHK S TLLP+YFKHSNFSSFIRQLNTYGFRKID D+WEFAN
Sbjct: 61  TDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPDRWEFAN 120

Query: 151 EGFQGGKKHLLKNIKRRSRYNNYKQQQHHLGMPMGLQDLTKHPLVEAELHALKSDNQVLR 210
           EGF  G+KHLLKNIKRR   N   Q  +  G  M   ++ ++   + E+  LK D+ VL 
Sbjct: 121 EGFLAGQKHLLKNIKRRR--NMGLQNVNQQGSGMSCVEVGQYGF-DGEVERLKRDHGVLV 180

Query: 211 VEMLKLREQQHDSQNQLTMVEDRVRCVESKHQQMLSFVSKMSRNPGFCRQLVQRRMLRKK 270
            E+++LR+QQH S++Q+  +E R+   E + QQM++F++K   NP F +Q       +K 
Sbjct: 181 AEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKALNNPNFVQQFAVMSKEKKS 240

Query: 271 LMNNGDEFGNNRRLLAMQG----HQNLSHSE-----------LVSTEMFPHVIEPGPAVL 330
           L   G + G  RRL +        +NL H +           L +  +        P   
Sbjct: 241 LF--GLDVGRKRRLTSTPSLGTMEENLLHDQEFDRMKDDMEMLFAAAIDDEANNSMPTKE 300

Query: 331 EQPVRA-STMVVDEDSDSKFFLELEDLIKKP 346
           EQ + A + M+ D + ++   +++EDL+  P
Sbjct: 301 EQCLEAMNVMMRDGNLEAALDVKVEDLVGSP 323

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BLAST of CmaCh05G013990 vs. ExPASy Swiss-Prot
Match: P41152 (Heat shock factor protein HSF30 OS=Solanum peruvianum OX=4082 GN=HSF30 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 4.7e-56
Identity = 119/219 (54.34%), Postives = 150/219 (68.49%), Query Frame = 0


Query: 66  PMEGLHEVGPAPFLKKTYEMVEDPETDPVVSWSEGGNSFIVWDSHKLSITLLPKYFKHSN 125
           PMEGLH+VGP PFL KTYEMVED  TD V+SWS   NSFIVWDSHK S TLLP++FKHSN
Sbjct: 20  PMEGLHDVGPPPFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSN 79

Query: 126 FSSFIRQLNTYGFRKIDSDKWEFANEGFQGGKKHLLKNIKRRSRYNNYKQQQHHLGMPMG 185
           FSSFIRQLNTYGFRK+D D+WEFANEGF GG+KHLLK IKRR    N  Q  +  G    
Sbjct: 80  FSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRR---RNVGQSMNQQGSGAC 139

Query: 186 LQDLTKHPLVEAELHALKSDNQVLRVEMLKLREQQHDSQNQLTMVEDRVRCVESKHQQML 245
           ++    +  +E EL  LK D  VL  E++KLR+QQ  ++NQ+  + +++   E K  QM+
Sbjct: 140 IE--IGYYGMEEELERLKRDKNVLMTEIVKLRQQQQSTRNQIIAMGEKIETQERKQVQMM 199

Query: 246 SFVSKMSRNPGFCRQLVQRRMLRKKLMNNGDEFGNNRRL 285
           SF++K+  NP F +Q + +++ RK       E G  RRL
Sbjct: 200 SFLAKIFSNPTFLQQYLDKQVHRKD--KQRIEVGQKRRL 231

[Close]

BLAST of CmaCh05G013990 vs. ExPASy Swiss-Prot
Match: Q6VBB2 (Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica OX=39947 GN=HSFA2B PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.1e-55
Identity = 124/261 (47.51%), Postives = 172/261 (65.90%), Query Frame = 0


Query: 31  VKEEEIEVSAGTMEGGGGESDSGGDGVSASSA--TAKPMEGLHEVGPAPFLKKTYEMVED 90
           VKEEE   S G  +GGG E  +G DG +A +A    +PMEGLH+ GP PFL KTY+MV+D
Sbjct: 9   VKEEE---SHG--DGGGLEVVAGEDGAAAVAAGVAPRPMEGLHDAGPPPFLTKTYDMVDD 68

Query: 91  PETDPVVSWSEGGNSFIVWDSHKLSITLLPKYFKHSNFSSFIRQLNTYGFRKIDSDKWEF 150
             TD  VSWS   NSF+VWD H  +  LLP++FKH+NFSSF+RQLNTYGFRK+D D+WEF
Sbjct: 69  AGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDRWEF 128

Query: 151 ANEGFQGGKKHLLKNIKRRSRYNNYKQQQHHLGMPMGLQDLTKHPLVEAELHALKSDNQV 210
           ANE F  G++HLLKNIKRR   ++    Q  LG  + +     H   +AE+  LK D Q+
Sbjct: 129 ANENFLRGQRHLLKNIKRRKPPSHTASNQQSLGPYLEV----GHFGYDAEIDRLKRDKQL 188

Query: 211 LRVEMLKLREQQHDSQNQLTMVEDRVRCVESKHQQMLSFVSKMSRNPGFCRQLVQRRMLR 270
           L  E++KLR++Q +++  L  +EDR++  E + QQM++F++++ +NP F +QL+ +  +R
Sbjct: 189 LMAEVVKLRQEQQNTKANLKAMEDRLQGTEQRQQQMMAFLARVMKNPEFLKQLMSQNEMR 248

Query: 271 KKLMNNGDEFGNNRRLLAMQG 290
           K+L    D     RR    QG
Sbjct: 249 KELQ---DAISKKRRRRIDQG 257

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BLAST of CmaCh05G013990 vs. ExPASy Swiss-Prot
Match: Q9LUH8 (Heat stress transcription factor A-6b OS=Arabidopsis thaliana OX=3702 GN=HSFA6b PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 5.2e-55
Identity = 107/213 (50.23%), Postives = 154/213 (72.30%), Query Frame = 0


Query: 65  KPMEGLHEVGPAPFLKKTYEMVEDPETDPVVSWSEGGNSFIVWDSHKLSITLLPKYFKHS 124
           +P+EGLHE GP PFL KTY++VED  T+ VVSWS+  NSFIVWD    S+TLLP++FKH+
Sbjct: 49  QPLEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHN 108

Query: 125 NFSSFIRQLNTYGFRKIDSDKWEFANEGFQGGKKHLLKNIKRRSRYNNYKQQQHHLGMPM 184
           NFSSF+RQLNTYGFRK++ D+WEFANEGF  G+KHLLKNI+RR   NN  Q Q       
Sbjct: 109 NFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSEQ 168

Query: 185 GLQDLTKHPL------VEAELHALKSDNQVLRVEMLKLREQQHDSQNQLTMVEDRVRCVE 244
             Q L    +      ++ E+ +L+ D QVL +E+++LR+QQ  ++  LT++E++++  E
Sbjct: 169 --QSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTE 228

Query: 245 SKHQQMLSFVSKMSRNPGFCRQLVQRRMLRKKL 272
           SK +QM+SF+++  +NP F +QLV+++  RK++
Sbjct: 229 SKQKQMMSFLARAMQNPDFIQQLVEQKEKRKEI 259

[Close]

BLAST of CmaCh05G013990 vs. ExPASy Swiss-Prot
Match: Q338B0 (Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica OX=39947 GN=HSFA2C PE=1 SV=2)

HSP 1 Score: 212.6 bits (540), Expect = 7.5e-54
Identity = 117/242 (48.35%), Postives = 155/242 (64.05%), Query Frame = 0


Query: 31  VKEEEIEVSAGTMEGGGGESDSGGDGVSASSATAKPMEGLHEVGPAPFLKKTYEMVEDPE 90
           VKEE +E      +  GG             A  +PMEGLHEVGP PFL KTY++VEDP 
Sbjct: 9   VKEEMLESQQQQRQEDGG-------------AAPRPMEGLHEVGPPPFLTKTYDLVEDPA 68

Query: 91  TDPVVSWSEGGNSFIVWDSHKLSITLLPKYFKHSNFSSFIRQLNTYGFRKIDSDKWEFAN 150
           TD VVSWS  GNSF+VWD H  +  LLP+ FKH+NFSSF+RQLNTYGFRK+D D+WEFAN
Sbjct: 69  TDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDRWEFAN 128

Query: 151 EGFQGGKKHLLKNIKRRSRYNNY-KQQQHHLGMPMGLQDLTKHPLVEAELHALKSDNQVL 210
           EGF  G++HLLK IKRR   +N    QQ  L   + + +       E E+  LK D  +L
Sbjct: 129 EGFLRGQRHLLKTIKRRKPPSNAPPSQQQSLTSCLEVGEFG----FEEEIDRLKRDKNIL 188

Query: 211 RVEMLKLREQQHDSQNQLTMVEDRVRCVESKHQQMLSFVSKMSRNPGFCRQLVQRRMLRK 270
             E++KLR++Q  +++ +  +EDR+R  E K  QM+ F+++  RNP F +QL Q++  RK
Sbjct: 189 ITEVVKLRQEQQATKDHVKAMEDRLRAAEQKQVQMMGFLARAMRNPEFFQQLAQQKEKRK 233

Query: 271 KL 272
           +L
Sbjct: 249 EL 233

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BLAST of CmaCh05G013990 vs. TAIR 10
Match: AT2G26150.1 (heat shock transcription factor A2 )

HSP 1 Score: 231.9 bits (590), Expect = 8.5e-61
Identity = 144/331 (43.50%), Postives = 199/331 (60.12%), Query Frame = 0


Query: 31  VKEEEIEVSAGTMEGGGGESDSGGDGVSASSATAKPMEGLHEVGPAPFLKKTYEMVEDPE 90
           ++E ++E+   T+   G  + S   G   SS++ +PMEGL+E GP PFL KTYEMVEDP 
Sbjct: 1   MEELKVEMEEETVTFTGSVAASSSVG---SSSSPRPMEGLNETGPPPFLTKTYEMVEDPA 60

Query: 91  TDPVVSWSEGGNSFIVWDSHKLSITLLPKYFKHSNFSSFIRQLNTYGFRKIDSDKWEFAN 150
           TD VVSWS G NSF+VWDSHK S TLLP+YFKHSNFSSFIRQLNTYGFRKID D+WEFAN
Sbjct: 61  TDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPDRWEFAN 120

Query: 151 EGFQGGKKHLLKNIKRRSRYNNYKQQQHHLGMPMGLQDLTKHPLVEAELHALKSDNQVLR 210
           EGF  G+KHLLKNIKRR   N   Q  +  G  M   ++ ++   + E+  LK D+ VL 
Sbjct: 121 EGFLAGQKHLLKNIKRRR--NMGLQNVNQQGSGMSCVEVGQYGF-DGEVERLKRDHGVLV 180

Query: 211 VEMLKLREQQHDSQNQLTMVEDRVRCVESKHQQMLSFVSKMSRNPGFCRQLVQRRMLRKK 270
            E+++LR+QQH S++Q+  +E R+   E + QQM++F++K   NP F +Q       +K 
Sbjct: 181 AEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKALNNPNFVQQFAVMSKEKKS 240

Query: 271 LMNNGDEFGNNRRLLAMQG----HQNLSHSE-----------LVSTEMFPHVIEPGPAVL 330
           L   G + G  RRL +        +NL H +           L +  +        P   
Sbjct: 241 LF--GLDVGRKRRLTSTPSLGTMEENLLHDQEFDRMKDDMEMLFAAAIDDEANNSMPTKE 300

Query: 331 EQPVRA-STMVVDEDSDSKFFLELEDLIKKP 346
           EQ + A + M+ D + ++   +++EDL+  P
Sbjct: 301 EQCLEAMNVMMRDGNLEAALDVKVEDLVGSP 323

[Close]

BLAST of CmaCh05G013990 vs. TAIR 10
Match: AT3G22830.1 (heat shock transcription factor A6B )

HSP 1 Score: 216.5 bits (550), Expect = 3.7e-56
Identity = 107/213 (50.23%), Postives = 154/213 (72.30%), Query Frame = 0


Query: 65  KPMEGLHEVGPAPFLKKTYEMVEDPETDPVVSWSEGGNSFIVWDSHKLSITLLPKYFKHS 124
           +P+EGLHE GP PFL KTY++VED  T+ VVSWS+  NSFIVWD    S+TLLP++FKH+
Sbjct: 49  QPLEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHN 108

Query: 125 NFSSFIRQLNTYGFRKIDSDKWEFANEGFQGGKKHLLKNIKRRSRYNNYKQQQHHLGMPM 184
           NFSSF+RQLNTYGFRK++ D+WEFANEGF  G+KHLLKNI+RR   NN  Q Q       
Sbjct: 109 NFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSEQ 168

Query: 185 GLQDLTKHPL------VEAELHALKSDNQVLRVEMLKLREQQHDSQNQLTMVEDRVRCVE 244
             Q L    +      ++ E+ +L+ D QVL +E+++LR+QQ  ++  LT++E++++  E
Sbjct: 169 --QSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTE 228

Query: 245 SKHQQMLSFVSKMSRNPGFCRQLVQRRMLRKKL 272
           SK +QM+SF+++  +NP F +QLV+++  RK++
Sbjct: 229 SKQKQMMSFLARAMQNPDFIQQLVEQKEKRKEI 259

[Close]

BLAST of CmaCh05G013990 vs. TAIR 10
Match: AT5G54070.1 (heat shock transcription factor A9 )

HSP 1 Score: 206.8 bits (525), Expect = 2.9e-53
Identity = 120/275 (43.64%), Postives = 171/275 (62.18%), Query Frame = 0


Query: 70  LHEVG-PAPFLKKTYEMVEDPETDPVVSWSEGGNSFIVWDSHKLSITLLPKYFKHSNFSS 129
           LHE+G   PFL+KT+E+V+D  TDPVVSWS    SFI+WDS++ S  LLPKYFKH NFSS
Sbjct: 63  LHEIGLITPFLRKTFEIVDDKVTDPVVSWSPTRKSFIIWDSYEFSENLLPKYFKHKNFSS 122

Query: 130 FIRQLNTYGFRKIDSDKWEFANEGFQGGKKHLLKNIKRRSRYNNYKQQQHHLGMPMGLQD 189
           FIRQLN+YGF+K+DSD+WEFANEGFQGGKKHLLKNIKRRS+      ++           
Sbjct: 123 FIRQLNSYGFKKVDSDRWEFANEGFQGGKKHLLKNIKRRSKNTKCCNKE----------- 182

Query: 190 LTKHPLVEAELHALKSDNQVLRVEMLKLREQQHDSQNQLTMVEDRVRCVESKHQQMLSFV 249
                  E E+ +LK +   +R+EMLKL++QQ +SQ+Q+  V++++  V+++ Q MLSF 
Sbjct: 183 -ASTTTTETEVESLKEEQSPMRLEMLKLKQQQEESQHQMVTVQEKIHGVDTEQQHMLSFF 242

Query: 250 SKMSRNPGFCRQLVQRRMLRKKLMNNGDEFGNNRRLLAMQGHQ-NLSHSELVSTEMFPHV 309
           +K++++  F  +LV++R ++ +      EF    +LL  Q  Q NL   E     M    
Sbjct: 243 AKLAKDQRFVERLVKKRKMKIQRELEAAEFVKKLKLLQDQETQKNLLDVEREFMAMAATE 302

Query: 310 IEPGPAVLEQPVRASTMVVDEDSDSKFFLELEDLI 343
             P P +L         V ++  +++  L  EDL+
Sbjct: 303 HNPEPDIL---------VNNQSGNTRCQLNSEDLL 316

[Close]

BLAST of CmaCh05G013990 vs. TAIR 10
Match: AT3G51910.1 (heat shock transcription factor A7A )

HSP 1 Score: 198.0 bits (502), Expect = 1.4e-50
Identity = 112/274 (40.88%), Postives = 166/274 (60.58%), Query Frame = 0


Query: 65  KPMEGLHEVGPAPFLKKTYEMVEDPETDPVVSWSEGGNSFIVWDSHKLSITLLPKYFKHS 124
           +PMEGLHE  P PFL KT+EMV+DP TD +VSW+ GG SF+VWD H  S  LLP++FKHS
Sbjct: 17  QPMEGLHENAPPPFLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFKHS 76

Query: 125 NFSSFIRQLNTYGFRKIDSDKWEFANEGFQGGKKHLLKNIKRRSRYNNYKQQQHHLGMPM 184
           NFSSFIRQLNTYGFRKI++++WEFANE F  G++ LLKNIKRR+ +       H      
Sbjct: 77  NFSSFIRQLNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRRNPFTPSSSPSHD----- 136

Query: 185 GLQDLTKHPLVEAELHALKSDNQVLRVEMLKLREQQHDSQNQLTMVEDRVRCVESKHQQM 244
                          + L+ + QVL +E++ LR+QQ  +++ +  +E R+   E K +QM
Sbjct: 137 -------------ACNELRREKQVLMMEIVSLRQQQQTTKSYIKAMEQRIEGTERKQRQM 196

Query: 245 LSFVSKMSRNPGFCRQLVQRRMLRKKLMNNGDEFGNNRRLLAMQGHQNLSHSELVSTEMF 304
           +SF+++  ++P F  QL+++R  + K      E  +N      +G  ++S  E+++ EM 
Sbjct: 197 MSFLARAMQSPSFLHQLLKQRDKKIK------ELEDNESAKRKRGSSSMSELEVLALEMQ 256

Query: 305 PHVIEPGPAVLEQPVRASTMVVDEDSDSKFFLEL 339
            H  +    +LE+      +VV+ + D  F+ EL
Sbjct: 257 GHGKQRN--MLEE--EDHQLVVERELDDGFWEEL 262

[Close]

BLAST of CmaCh05G013990 vs. TAIR 10
Match: AT5G16820.1 (heat shock factor 3 )

HSP 1 Score: 187.2 bits (474), Expect = 2.4e-47
Identity = 108/232 (46.55%), Postives = 144/232 (62.07%), Query Frame = 0


Query: 77  PFLKKTYEMVEDPETDPVVSWSEGGNSFIVWDSHKLSITLLPKYFKHSNFSSFIRQLNTY 136
           PFL KTY+MV+DP T+ VVSWS G NSF+VW + + S  LLPKYFKH+NFSSF+RQLNTY
Sbjct: 27  PFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQLNTY 86

Query: 137 GFRKIDSDKWEFANEGFQGGKKHLLKNIKRR--SRYNNYKQQQHHLGMPMGLQDLTKHPL 196
           GFRK+D D+WEFANEGF  G+K LLK+I RR  S     +QQ       +G         
Sbjct: 87  GFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEVGKFG 146

Query: 197 VEAELHALKSDNQVLRVEMLKLREQQHDSQNQLTMVEDRVRCVESKHQQMLSFVSKMSRN 256
           +E E+  LK D  VL  E+++LR+QQ  ++NQL  V  +V+ +E + QQM+SF++K  ++
Sbjct: 147 IEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAKAVQS 206

Query: 257 PGFCRQLVQ----------------RRMLRKKLMNNGDEFGN--NRRLLAMQ 289
           PGF  QLVQ                RR+   +  N GD   N  NR+++  Q
Sbjct: 207 PGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDEQENRGDNVANGLNRQIVRYQ 258

The following BLAST results are available for this feature:

BLAST of CmaCh05G013990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80982	1.2e-59	43.50	Heat stress transcription factor A-2 OS=Arabidopsis thaliana OX=3702 GN=HSFA2 PE...	[more]
P41152	4.7e-56	54.34	Heat shock factor protein HSF30 OS=Solanum peruvianum OX=4082 GN=HSF30 PE=2 SV=1	[more]
Q6VBB2	3.1e-55	47.51	Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q9LUH8	5.2e-55	50.23	Heat stress transcription factor A-6b OS=Arabidopsis thaliana OX=3702 GN=HSFA6b ...	[more]
Q338B0	7.5e-54	48.35	Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of CmaCh05G013990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26150.1	8.5e-61	43.50	heat shock transcription factor A2	[more]
AT3G22830.1	3.7e-56	50.23	heat shock transcription factor A6B	[more]
AT5G54070.1	2.9e-53	43.64	heat shock transcription factor A9	[more]
AT3G51910.1	1.4e-50	40.88	heat shock transcription factor A7A	[more]
AT5G16820.1	2.4e-47	46.55	heat shock factor 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 199..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..73
None	No IPR available	PANTHER	PTHR10015:SF298	HEAT STRESS TRANSCRIPTION FACTOR A-9	coord: 58..292
IPR000232	Heat shock factor (HSF)-type, DNA-binding	PRINTS	PR00056	HSFDOMAIN	coord: 116..128 score: 78.02 coord: 129..141 score: 81.76 coord: 78..101 score: 49.76
IPR000232	Heat shock factor (HSF)-type, DNA-binding	SMART	SM00415	hsfneu3	coord: 74..167 e-value: 1.5E-57 score: 207.2
IPR000232	Heat shock factor (HSF)-type, DNA-binding	PFAM	PF00447	HSF_DNA-bind	coord: 78..167 e-value: 2.6E-32 score: 111.3
IPR000232	Heat shock factor (HSF)-type, DNA-binding	PROSITE	PS00434	HSF_DOMAIN	coord: 117..141
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 71..168 e-value: 5.8E-37 score: 128.3
IPR027725	Heat shock transcription factor family	PANTHER	PTHR10015	HEAT SHOCK TRANSCRIPTION FACTOR	coord: 58..292
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 74..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G013990.1	CmaCh05G013990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034605	cellular response to heat
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding