CmaCh05G013910 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G013910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	tetraspanin-2-like
Location	Cma_Chr05: 10405620 .. 10408353 (+)
RNA-Seq Expression	CmaCh05G013910
Synteny	CmaCh05G013910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTAACAAGGAAGTCTCTCTCAGTGAAGAAATTGGGAGAGAAATTCAATGGGTTTAAGCAACAACATCACGGCAATTGTGAACTTCTTGGCACTTCTCTGCTCCATCCCCATAATCGGTGCCGGAATTTGGCTGGCTTCAAAGCCTGATTACGAATGCATCCATTTTTTCCGGTGGCCGGTGGTTCTCCTCGGCGTCTTAATCCTCCTCGTCTCTTTAGCGGGCTTCATCGGCGCCTACTGGAACAGACAAGGCCTCTTGGCCTTTTACCTCTTCTGTATGGCTCTTCTAATCGGCCTTTTGCTGGTCCTCCTCGTCTTCACCTTCGTCGTCACTCGCCCCGACGGTAGCTACACCGTCATGGGCCGAGGATTCAAGGAGTATCGGCTCGACGGATTCTCGTCCTGGCTCAAAAATCATCTCACTAATTCTAGAAATTGGCCGAAGATAAGGACGTGTTTGCCGGAATCTGATGTGTGTTCTAAGCTTAATCAGAGATACTTCGCCGCCGATCAGTTTTTCGCGGTGGACATCTCGCCGCTTCAGGTCAGTTCCTTTGATTCCGAATTGAAATATATATATAATTTTTCTCTTTAATTTCTTAAAATATGGTCGGAGGATTCGATCGGAGGCTTCTCTGACGCCATCCTGACCCCAAGGTCGGTTCTTCAGAAAAGAAAGCAAAAAGATATTAAAAAAACAAATTTATTTATTATTAATACTTTAGTAATAAAAAATGAAAATTTAACCAATAACCATTACGCTTTAATAATACCAAAAACTTATATAAAATTTTGTATCGTATCTAATAAACCAATTTTTTTTAATTTTTGAATTTTGGTTAATTTGTGCATGGACTTATGAATTTTATTAAAATTACTAATAATTGCATTACTTACTTAAATTTAGAGTTTAATTTAATAAAATAGAATGTGGTGATTTTTTTTTTTTCAAAAATCAAATGGTGAAGTTATTACTATTATTTTGTTTAATTTGTAGAAACTAAATTCTAAAGGTTATTAAATTTATAGAAACTAAATTAAAATAAGTTTTTTTGTTTAATTTGGAAATTTTATTGTGGCCACCTATTTGAGTTTTATATCAATAAAGTGTAAAATGTAAATAATAGAGTTAAAAATTTCAAATAAATTATAGGTAATTCATTTGAATAGAAGTGAATATATTTTGATTACTAAAACTAGTTTTATGATTTTAATTTCAGGGGTAAATAAAATATTATTGATTTTTAATGTTTTATTCTTTTATTAATTTTTTATGTTTTTTATTTTCTTTTGGGAAAAGGTGAATTTAATCTCCCACAACTATTAAGTAGACAGCTAAGATTTGATTGGGGGCCCTTTTGATACCATACTGATTCATCAAATTCAAGATGGTTTAAGATTGACTCAGAAAATGGTGGAAGTGGGAGCCAACTAATAACTCCATAATCACTAATTGTTTAATCTCTTCCTTCAAAACTTTCCAACTCGAACTCTCTTCCTTTCCACTCATTATTGACTCTACCAAACACTCGTAGGATGGGTTTGATTGGTTAATTTTGTTCTTTTACACTCGGCTCTTGATTTTACCAAGCACTCGAACTCAATTAGTTGCGTATCTAGCGAAACGGGTCAGGGTGGTTAACTTTGTTCTTTTATACTCCCTCTTGATTCTACCAAACACTCTCAATCAATCGTGTTTCTAACTAAACGAGTCAGTTAACTTTATTCTTTTACACTCACTCTTGATGCTACCGAACATCTCACTCAATGAAATCATGCATCCAGTGGGATAGGTTAGTTGACTTTATTCTTTTACACCCACTCTTGACTCTACCAAATCCTGACCCAATTAATTGTGCATCTAGCGGGACTGGTAAGTTAACTTTGTTCTTTTACACTCTTGACCTGTCCCGTCTAGGGTCACCTTTTATGGATCATGGAGTTGAATTCTTTCCCTAGAAGTCTTGAACTCTAAACTTGCTTCTTCCGAGAAAATTGCTCTCAATCACTAGTTATCTATATATTTGTCAAGCTGGTGTCATAGTCTTACCTCATTGGTAGTAGGTCAAATCTCCTCCCTCTTTTAGGCTGGGTTAATGTTGGAGCTTAACAATTTAGGCTCGGTTGAGTAACTATTTGACTTTTGGTTTCGAAAATTAAACTTCTTAACATCATTCATAATTCAAAGATAAGGGGTGAAAAAACAATCACGAAACAAAAAACGAAATAGTCGTTAACGGGGTCTTACTTGGTTTTTCCTCTGCATGTGCATGCAGTCCGGGTGCTGTAAACCTCCAACAGCTTGCGGGTATAACTTCGTGAACCCGACACTGTGGCTGAACCCTGGTGATCCAATGGCTGACCCAGACTGCTATATTTGGAGCAATGACCAGACCCAGTTGTGCTACAATTGCAACTCTTGCAAGGCTGGTCTCTTGGGGAACCTCAGAAAAGAATGGAGGAAAGCCAATGTGGTTCTCATTGTCACTGTGGTGATCCTGATTTGGGTTTATGTAATCGGCTGCAGCGCCTTCAAAAACGCTCAGACCGAGGACCTCTTTCGTCGTTACAAACTGGGATGGATCTGATCTTGTTTTTGTTACCTTTTCAACTCTGTTTAGGATGCCTTTATCCCTATGTTTATAGAGTTTCCAGACAGCACAACCAAGTTTTGGAACCTAAATGGTTATTCACAACCTTTGTCTCAGATAAGAATACAATTTCAGTGATTC

mRNA sequence

GGGTAACAAGGAAGTCTCTCTCAGTGAAGAAATTGGGAGAGAAATTCAATGGGTTTAAGCAACAACATCACGGCAATTGTGAACTTCTTGGCACTTCTCTGCTCCATCCCCATAATCGGTGCCGGAATTTGGCTGGCTTCAAAGCCTGATTACGAATGCATCCATTTTTTCCGGTGGCCGGTGGTTCTCCTCGGCGTCTTAATCCTCCTCGTCTCTTTAGCGGGCTTCATCGGCGCCTACTGGAACAGACAAGGCCTCTTGGCCTTTTACCTCTTCTGTATGGCTCTTCTAATCGGCCTTTTGCTGGTCCTCCTCGTCTTCACCTTCGTCGTCACTCGCCCCGACGGTAGCTACACCGTCATGGGCCGAGGATTCAAGGAGTATCGGCTCGACGGATTCTCGTCCTGGCTCAAAAATCATCTCACTAATTCTAGAAATTGGCCGAAGATAAGGACGTGTTTGCCGGAATCTGATGTGTGTTCTAAGCTTAATCAGAGATACTTCGCCGCCGATCAGTTTTTCGCGGTGGACATCTCGCCGCTTCAGTCCGGGTGCTGTAAACCTCCAACAGCTTGCGGGTATAACTTCGTGAACCCGACACTGTGGCTGAACCCTGGTGATCCAATGGCTGACCCAGACTGCTATATTTGGAGCAATGACCAGACCCAGTTGTGCTACAATTGCAACTCTTGCAAGGCTGGTCTCTTGGGGAACCTCAGAAAAGAATGGAGGAAAGCCAATGTGGTTCTCATTGTCACTGTGGTGATCCTGATTTGGGTTTATGTAATCGGCTGCAGCGCCTTCAAAAACGCTCAGACCGAGGACCTCTTTCGTCGTTACAAACTGGGATGGATCTGATCTTGTTTTTGTTACCTTTTCAACTCTGTTTAGGATGCCTTTATCCCTATGTTTATAGAGTTTCCAGACAGCACAACCAAGTTTTGGAACCTAAATGGTTATTCACAACCTTTGTCTCAGATAAGAATACAATTTCAGTGATTC

Coding sequence (CDS)

ATGGGTTTAAGCAACAACATCACGGCAATTGTGAACTTCTTGGCACTTCTCTGCTCCATCCCCATAATCGGTGCCGGAATTTGGCTGGCTTCAAAGCCTGATTACGAATGCATCCATTTTTTCCGGTGGCCGGTGGTTCTCCTCGGCGTCTTAATCCTCCTCGTCTCTTTAGCGGGCTTCATCGGCGCCTACTGGAACAGACAAGGCCTCTTGGCCTTTTACCTCTTCTGTATGGCTCTTCTAATCGGCCTTTTGCTGGTCCTCCTCGTCTTCACCTTCGTCGTCACTCGCCCCGACGGTAGCTACACCGTCATGGGCCGAGGATTCAAGGAGTATCGGCTCGACGGATTCTCGTCCTGGCTCAAAAATCATCTCACTAATTCTAGAAATTGGCCGAAGATAAGGACGTGTTTGCCGGAATCTGATGTGTGTTCTAAGCTTAATCAGAGATACTTCGCCGCCGATCAGTTTTTCGCGGTGGACATCTCGCCGCTTCAGTCCGGGTGCTGTAAACCTCCAACAGCTTGCGGGTATAACTTCGTGAACCCGACACTGTGGCTGAACCCTGGTGATCCAATGGCTGACCCAGACTGCTATATTTGGAGCAATGACCAGACCCAGTTGTGCTACAATTGCAACTCTTGCAAGGCTGGTCTCTTGGGGAACCTCAGAAAAGAATGGAGGAAAGCCAATGTGGTTCTCATTGTCACTGTGGTGATCCTGATTTGGGTTTATGTAATCGGCTGCAGCGCCTTCAAAAACGCTCAGACCGAGGACCTCTTTCGTCGTTACAAACTGGGATGGATCTGA

Protein sequence

MGLSNNITAIVNFLALLCSIPIIGAGIWLASKPDYECIHFFRWPVVLLGVLILLVSLAGFIGAYWNRQGLLAFYLFCMALLIGLLLVLLVFTFVVTRPDGSYTVMGRGFKEYRLDGFSSWLKNHLTNSRNWPKIRTCLPESDVCSKLNQRYFAADQFFAVDISPLQSGCCKPPTACGYNFVNPTLWLNPGDPMADPDCYIWSNDQTQLCYNCNSCKAGLLGNLRKEWRKANVVLIVTVVILIWVYVIGCSAFKNAQTEDLFRRYKLGWI

Homology

[Close]

BLAST of CmaCh05G013910 vs. ExPASy Swiss-Prot
Match: Q9ZUN5 (Tetraspanin-2 OS=Arabidopsis thaliana OX=3702 GN=TET2 PE=2 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 5.7e-120
Identity = 197/270 (72.96%), Postives = 235/270 (87.04%), Query Frame = 0


Query: 1   MGLSNNITAIVNFLALLCSIPIIGAGIWLASKPDYECIHFFRWPVVLLGVLILLVSLAGF 60
           M L+NN+TAI+N LALLCSIPI  +GIWLASKPD EC++  RWPVV+LGVLIL+VS  GF
Sbjct: 1   MALANNLTAILNLLALLCSIPITASGIWLASKPDNECVNLLRWPVVVLGVLILVVSATGF 60

Query: 61  IGAYWNRQGLLAFYLFCMALLIGLLLVLLVFTFVVTRPDGSYTVMGRGFKEYRLDGFSSW 120
           IGAY  ++ LLA YL CMA+LIGLLLV+L+F FVVTRPDGSY V GRG+KEYRL+GFS+W
Sbjct: 61  IGAYKYKETLLAVYLCCMAILIGLLLVVLIFAFVVTRPDGSYRVPGRGYKEYRLEGFSNW 120

Query: 121 LKNHLTNSRNWPKIRTCLPESDVCSKLNQRYFAADQFFAVD-ISPLQSGCCKPPTACGYN 180
           LK ++ +S+NW ++R CL +++VC KLNQ +  ADQFF+   I+PLQSGCCKPPTACGYN
Sbjct: 121 LKENVVDSKNWGRLRACLADTNVCPKLNQEFITADQFFSSSKITPLQSGCCKPPTACGYN 180

Query: 181 FVNPTLWLNPGDPMADPDCYIWSNDQTQLCYNCNSCKAGLLGNLRKEWRKANVVLIVTVV 240
           FVNPTLWLNP +  AD DCY+WSNDQ+QLCYNCNSCKAGLLGNLRKEWRKAN++LI+TVV
Sbjct: 181 FVNPTLWLNPTNMAADADCYLWSNDQSQLCYNCNSCKAGLLGNLRKEWRKANLILIITVV 240

Query: 241 ILIWVYVIGCSAFKNAQTEDLFRRYKLGWI 270
           +LIWVYVI CSAF+NAQTEDLFR+YK GW+
Sbjct: 241 VLIWVYVIACSAFRNAQTEDLFRKYKQGWV 270

[Close]

BLAST of CmaCh05G013910 vs. ExPASy Swiss-Prot
Match: Q9FIQ5 (Protein TORNADO 2 OS=Arabidopsis thaliana OX=3702 GN=TRN2 PE=1 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 4.0e-81
Identity = 139/268 (51.87%), Postives = 182/268 (67.91%), Query Frame = 0


Query: 1   MGLSNNITAIVNFLALLCSIPIIGAGIWLASKPDYECIHFFRWPVVLLGVLILLVSLAGF 60
           M LSNN+   +NF+ +L SIP+IGAGIWLA      C+   +WPV++LGVLILLV LAGF
Sbjct: 1   MPLSNNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGF 60

Query: 61  IGAYWNRQGLLAFYLFCMALLIGLLLVLLVFTFVVTRPDGSYTVMGRGFKEYRLDGFSSW 120
           IG +W    LL  YL  M +LI LL  L+ F ++VT     +    R + EY L  FS W
Sbjct: 61  IGGFWRITWLLVVYLIAMLILIVLLGCLVGFIYMVTIRGSGHPEPSRAYLEYSLQDFSGW 120

Query: 121 LKNHLTNSRNWPKIRTCLPESDVCSKLNQRYFAADQFFAVDISPLQSGCCKPPTACGYNF 180
           L+  +  S  W +IRTCL  + +C +LNQRY  A  FF   + P+QSGCCKPPT CG+ F
Sbjct: 121 LRRRVQRSYKWERIRTCLSTTTICPELNQRYTLAQDFFNAHLDPIQSGCCKPPTKCGFTF 180

Query: 181 VNPTLWLNPGDPMADPDCYIWSNDQTQLCYNCNSCKAGLLGNLRKEWRKANVVLIVTVVI 240
           VNPT W++P D  AD DC  WSNDQ  LCY C+SCKAGLL N++ +W KA++ L++ ++ 
Sbjct: 181 VNPTYWISPIDMSADMDCLNWSNDQNTLCYTCDSCKAGLLANIKVDWLKADIFLLLALIG 240

Query: 241 LIWVYVIGCSAFKNAQTEDLFRRYKLGW 269
           LI VY+IGC AF+NA+TED+FR+YK G+
Sbjct: 241 LIIVYIIGCCAFRNAETEDIFRKYKQGY 268

[Close]

BLAST of CmaCh05G013910 vs. ExPASy Swiss-Prot
Match: Q9M1E7 (Tetraspanin-3 OS=Arabidopsis thaliana OX=3702 GN=TET3 PE=1 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 8.9e-65
Identity = 115/265 (43.40%), Postives = 177/265 (66.79%), Query Frame = 0


Query: 1   MGLSNNITAIVNFLALLCSIPIIGAGIWLASKPD-YECIHFFRWPVVLLGVLILLVSLAG 60
           M  SN++  +VNFL  L SIPI+G GIWL+S+ +  +C+ F +WP++++G+ I++VSLAG
Sbjct: 1   MRTSNHLIGLVNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIVIGISIMVVSLAG 60

Query: 61  FIGAYWNRQGLLAFYLFCMALLIGLLLVLLVFTFVVTRPDGSYTVMGRGFKEYRLDGFSS 120
           F GA +  + L+  YL  M L+I  L+  ++F + VT      TV+ RG+ +Y L+ +S 
Sbjct: 61  FAGACYRNKFLMWLYLVVMLLIIAALIGFIIFAYAVTDKGSGRTVLNRGYLDYYLEDYSG 120

Query: 121 WLKNHLTNSRNWPKIRTCLPESDVCSKLNQRY----FAADQFFAVDISPLQSGCCKPPTA 180
           WLK+ +++   W KI +CL +S  C K+ + +      AD FF   +SP++SGCCKPPT 
Sbjct: 121 WLKDRVSDDSYWGKISSCLRDSGACRKIGRNFNGVPETADMFFLRRLSPVESGCCKPPTD 180

Query: 181 CGYNFVNPTLWLNPGDPMA-DPDCYIWSNDQTQLCYNCNSCKAGLLGNLRKEWRKANVVL 240
           CG+++VN T W   G  +  + DC +WSNDQ+ LCY C+SCKAG+LG+L+K WRK +V+ 
Sbjct: 181 CGFSYVNETGWDTRGGMIGPNQDCMVWSNDQSMLCYQCSSCKAGVLGSLKKSWRKVSVIN 240

Query: 241 IVTVVILIWVYVIGCSAFKNAQTED 260
           IV ++IL+  YVI  +A++N +  D
Sbjct: 241 IVVLIILVIFYVIAYAAYRNVKRID 265

[Close]

BLAST of CmaCh05G013910 vs. ExPASy Swiss-Prot
Match: Q8S8Q6 (Tetraspanin-8 OS=Arabidopsis thaliana OX=3702 GN=TET8 PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.5e-64
Identity = 120/263 (45.63%), Postives = 166/263 (63.12%), Query Frame = 0


Query: 4   SNNITAIVNFLALLCSIPIIGAGIWLASKPDYECIHFFRWPVVLLGVLILLVSLAGFIGA 63
           SNN+  I+NFL  L SIPI+  GIWL+ K   EC  F   PV+ LGV +++V++AG IG+
Sbjct: 5   SNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAGLIGS 64

Query: 64  YWNRQGLLAFYLFCMALLIGLLLVLLVFTFVVTRPDGSYTVMGRGFKEYRLDGFSSWLKN 123
                 LL  YLF M LLI L+  + VF FVVT       + G+G+KEY+L  +S+WL+ 
Sbjct: 65  CCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYSTWLQK 124

Query: 124 HLTNSRNWPKIRTCLPESDVCSKLNQRY--FAADQFFAVDISPLQSGCCKPPTACGYNFV 183
            + N +NW KIR+CL ES VCSKL  ++     + F+   ++ LQSGCCKP   CG+ +V
Sbjct: 125 RVENGKNWNKIRSCLVESKVCSKLEAKFVNVPVNSFYKEHLTALQSGCCKPSDECGFEYV 184

Query: 184 NPTLWL-NPGDPMADPDCYIWSNDQTQLCYNCNSCKAGLLGNLRKEWRKANVVLIVTVVI 243
           NPT W  N      +PDC  W N + +LC++C SCKAGLL N++  W+K  +V IV +V 
Sbjct: 185 NPTTWTKNTTGTHTNPDCQTWDNAKEKLCFDCQSCKAGLLDNVKSAWKKVAIVNIVFLVF 244

Query: 244 LIWVYVIGCSAFKNAQTEDLFRR 264
           LI VY +GC AF+N + +D + R
Sbjct: 245 LIIVYSVGCCAFRNNKRDDSYSR 267

[Close]

BLAST of CmaCh05G013910 vs. ExPASy Swiss-Prot
Match: Q9LSS4 (Tetraspanin-4 OS=Arabidopsis thaliana OX=3702 GN=TET4 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 8.4e-63
Identity = 111/258 (43.02%), Postives = 173/258 (67.05%), Query Frame = 0


Query: 5   NNITAIVNFLALLCSIPIIGAGIWLASKPD-YECIHFFRWPVVLLGVLILLVSLAGFIGA 64
           +N+  ++NF   L SIPI+G GIWL+S+ +  +C+ F +WP++++G+ I+++SLAG  GA
Sbjct: 5   SNLIGLINFFTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIIIGISIMVISLAGIAGA 64

Query: 65  YWNRQGLLAFYLFCMALLIGLLLVLLVFTFVVTRPDGSYTVMGRGFKEYRLDGFSSWLKN 124
            +  + L+  YLF M  +I  L+   +F +VVT       VM R + +Y L+ +S WLK+
Sbjct: 65  CYQNKFLMWLYLFTMFFVIAALIGFTIFAYVVTDKGSGRFVMNRRYLDYYLNDYSGWLKD 124

Query: 125 HLTNSRNWPKIRTCLPESDVCSK----LNQRYFAADQFFAVDISPLQSGCCKPPTACGYN 184
            +T++  W  I +C+ +S VC K    LN     A  F+  ++SP++SGCCKPPT CGY 
Sbjct: 125 RVTDNGYWRDIGSCVRDSGVCKKIGRDLNGVPETAHMFYFRNLSPVESGCCKPPTDCGYT 184

Query: 185 FVNPTLWLNPGDPMA-DPDCYIWSNDQTQLCYNCNSCKAGLLGNLRKEWRKANVVLIVTV 244
           +VN T+W+  G+ +  +PDC +W+NDQ  LCY C+SCKAG+LG+L+K WRK +V+ IV V
Sbjct: 185 YVNETVWIPGGEMVGPNPDCMLWNNDQRLLCYQCSSCKAGVLGSLKKSWRKVSVINIVVV 244

Query: 245 VILIWVYVIGCSAFKNAQ 257
           +IL+  YVI C+A++N +
Sbjct: 245 IILVIFYVIACAAYQNVK 262

[Close]

BLAST of CmaCh05G013910 vs. TAIR 10
Match: AT2G19580.1 (tetraspanin2 )

HSP 1 Score: 431.8 bits (1109), Expect = 4.1e-121
Identity = 197/270 (72.96%), Postives = 235/270 (87.04%), Query Frame = 0


Query: 1   MGLSNNITAIVNFLALLCSIPIIGAGIWLASKPDYECIHFFRWPVVLLGVLILLVSLAGF 60
           M L+NN+TAI+N LALLCSIPI  +GIWLASKPD EC++  RWPVV+LGVLIL+VS  GF
Sbjct: 1   MALANNLTAILNLLALLCSIPITASGIWLASKPDNECVNLLRWPVVVLGVLILVVSATGF 60

Query: 61  IGAYWNRQGLLAFYLFCMALLIGLLLVLLVFTFVVTRPDGSYTVMGRGFKEYRLDGFSSW 120
           IGAY  ++ LLA YL CMA+LIGLLLV+L+F FVVTRPDGSY V GRG+KEYRL+GFS+W
Sbjct: 61  IGAYKYKETLLAVYLCCMAILIGLLLVVLIFAFVVTRPDGSYRVPGRGYKEYRLEGFSNW 120

Query: 121 LKNHLTNSRNWPKIRTCLPESDVCSKLNQRYFAADQFFAVD-ISPLQSGCCKPPTACGYN 180
           LK ++ +S+NW ++R CL +++VC KLNQ +  ADQFF+   I+PLQSGCCKPPTACGYN
Sbjct: 121 LKENVVDSKNWGRLRACLADTNVCPKLNQEFITADQFFSSSKITPLQSGCCKPPTACGYN 180

Query: 181 FVNPTLWLNPGDPMADPDCYIWSNDQTQLCYNCNSCKAGLLGNLRKEWRKANVVLIVTVV 240
           FVNPTLWLNP +  AD DCY+WSNDQ+QLCYNCNSCKAGLLGNLRKEWRKAN++LI+TVV
Sbjct: 181 FVNPTLWLNPTNMAADADCYLWSNDQSQLCYNCNSCKAGLLGNLRKEWRKANLILIITVV 240

Query: 241 ILIWVYVIGCSAFKNAQTEDLFRRYKLGWI 270
           +LIWVYVI CSAF+NAQTEDLFR+YK GW+
Sbjct: 241 VLIWVYVIACSAFRNAQTEDLFRKYKQGWV 270

[Close]

BLAST of CmaCh05G013910 vs. TAIR 10
Match: AT5G46700.1 (Tetraspanin family protein )

HSP 1 Score: 302.8 bits (774), Expect = 2.8e-82
Identity = 139/268 (51.87%), Postives = 182/268 (67.91%), Query Frame = 0


Query: 1   MGLSNNITAIVNFLALLCSIPIIGAGIWLASKPDYECIHFFRWPVVLLGVLILLVSLAGF 60
           M LSNN+   +NF+ +L SIP+IGAGIWLA      C+   +WPV++LGVLILLV LAGF
Sbjct: 1   MPLSNNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGF 60

Query: 61  IGAYWNRQGLLAFYLFCMALLIGLLLVLLVFTFVVTRPDGSYTVMGRGFKEYRLDGFSSW 120
           IG +W    LL  YL  M +LI LL  L+ F ++VT     +    R + EY L  FS W
Sbjct: 61  IGGFWRITWLLVVYLIAMLILIVLLGCLVGFIYMVTIRGSGHPEPSRAYLEYSLQDFSGW 120

Query: 121 LKNHLTNSRNWPKIRTCLPESDVCSKLNQRYFAADQFFAVDISPLQSGCCKPPTACGYNF 180
           L+  +  S  W +IRTCL  + +C +LNQRY  A  FF   + P+QSGCCKPPT CG+ F
Sbjct: 121 LRRRVQRSYKWERIRTCLSTTTICPELNQRYTLAQDFFNAHLDPIQSGCCKPPTKCGFTF 180

Query: 181 VNPTLWLNPGDPMADPDCYIWSNDQTQLCYNCNSCKAGLLGNLRKEWRKANVVLIVTVVI 240
           VNPT W++P D  AD DC  WSNDQ  LCY C+SCKAGLL N++ +W KA++ L++ ++ 
Sbjct: 181 VNPTYWISPIDMSADMDCLNWSNDQNTLCYTCDSCKAGLLANIKVDWLKADIFLLLALIG 240

Query: 241 LIWVYVIGCSAFKNAQTEDLFRRYKLGW 269
           LI VY+IGC AF+NA+TED+FR+YK G+
Sbjct: 241 LIIVYIIGCCAFRNAETEDIFRKYKQGY 268

[Close]

BLAST of CmaCh05G013910 vs. TAIR 10
Match: AT3G45600.1 (tetraspanin3 )

HSP 1 Score: 248.4 bits (633), Expect = 6.4e-66
Identity = 115/265 (43.40%), Postives = 177/265 (66.79%), Query Frame = 0


Query: 1   MGLSNNITAIVNFLALLCSIPIIGAGIWLASKPD-YECIHFFRWPVVLLGVLILLVSLAG 60
           M  SN++  +VNFL  L SIPI+G GIWL+S+ +  +C+ F +WP++++G+ I++VSLAG
Sbjct: 1   MRTSNHLIGLVNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIVIGISIMVVSLAG 60

Query: 61  FIGAYWNRQGLLAFYLFCMALLIGLLLVLLVFTFVVTRPDGSYTVMGRGFKEYRLDGFSS 120
           F GA +  + L+  YL  M L+I  L+  ++F + VT      TV+ RG+ +Y L+ +S 
Sbjct: 61  FAGACYRNKFLMWLYLVVMLLIIAALIGFIIFAYAVTDKGSGRTVLNRGYLDYYLEDYSG 120

Query: 121 WLKNHLTNSRNWPKIRTCLPESDVCSKLNQRY----FAADQFFAVDISPLQSGCCKPPTA 180
           WLK+ +++   W KI +CL +S  C K+ + +      AD FF   +SP++SGCCKPPT 
Sbjct: 121 WLKDRVSDDSYWGKISSCLRDSGACRKIGRNFNGVPETADMFFLRRLSPVESGCCKPPTD 180

Query: 181 CGYNFVNPTLWLNPGDPMA-DPDCYIWSNDQTQLCYNCNSCKAGLLGNLRKEWRKANVVL 240
           CG+++VN T W   G  +  + DC +WSNDQ+ LCY C+SCKAG+LG+L+K WRK +V+ 
Sbjct: 181 CGFSYVNETGWDTRGGMIGPNQDCMVWSNDQSMLCYQCSSCKAGVLGSLKKSWRKVSVIN 240

Query: 241 IVTVVILIWVYVIGCSAFKNAQTED 260
           IV ++IL+  YVI  +A++N +  D
Sbjct: 241 IVVLIILVIFYVIAYAAYRNVKRID 265

[Close]

BLAST of CmaCh05G013910 vs. TAIR 10
Match: AT2G23810.1 (tetraspanin8 )

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-65
Identity = 120/263 (45.63%), Postives = 166/263 (63.12%), Query Frame = 0


Query: 4   SNNITAIVNFLALLCSIPIIGAGIWLASKPDYECIHFFRWPVVLLGVLILLVSLAGFIGA 63
           SNN+  I+NFL  L SIPI+  GIWL+ K   EC  F   PV+ LGV +++V++AG IG+
Sbjct: 5   SNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAGLIGS 64

Query: 64  YWNRQGLLAFYLFCMALLIGLLLVLLVFTFVVTRPDGSYTVMGRGFKEYRLDGFSSWLKN 123
                 LL  YLF M LLI L+  + VF FVVT       + G+G+KEY+L  +S+WL+ 
Sbjct: 65  CCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYSTWLQK 124

Query: 124 HLTNSRNWPKIRTCLPESDVCSKLNQRY--FAADQFFAVDISPLQSGCCKPPTACGYNFV 183
            + N +NW KIR+CL ES VCSKL  ++     + F+   ++ LQSGCCKP   CG+ +V
Sbjct: 125 RVENGKNWNKIRSCLVESKVCSKLEAKFVNVPVNSFYKEHLTALQSGCCKPSDECGFEYV 184

Query: 184 NPTLWL-NPGDPMADPDCYIWSNDQTQLCYNCNSCKAGLLGNLRKEWRKANVVLIVTVVI 243
           NPT W  N      +PDC  W N + +LC++C SCKAGLL N++  W+K  +V IV +V 
Sbjct: 185 NPTTWTKNTTGTHTNPDCQTWDNAKEKLCFDCQSCKAGLLDNVKSAWKKVAIVNIVFLVF 244

Query: 244 LIWVYVIGCSAFKNAQTEDLFRR 264
           LI VY +GC AF+N + +D + R
Sbjct: 245 LIIVYSVGCCAFRNNKRDDSYSR 267

[Close]

BLAST of CmaCh05G013910 vs. TAIR 10
Match: AT5G60220.1 (tetraspanin4 )

HSP 1 Score: 241.9 bits (616), Expect = 5.9e-64
Identity = 111/258 (43.02%), Postives = 173/258 (67.05%), Query Frame = 0


Query: 5   NNITAIVNFLALLCSIPIIGAGIWLASKPD-YECIHFFRWPVVLLGVLILLVSLAGFIGA 64
           +N+  ++NF   L SIPI+G GIWL+S+ +  +C+ F +WP++++G+ I+++SLAG  GA
Sbjct: 5   SNLIGLINFFTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIIIGISIMVISLAGIAGA 64

Query: 65  YWNRQGLLAFYLFCMALLIGLLLVLLVFTFVVTRPDGSYTVMGRGFKEYRLDGFSSWLKN 124
            +  + L+  YLF M  +I  L+   +F +VVT       VM R + +Y L+ +S WLK+
Sbjct: 65  CYQNKFLMWLYLFTMFFVIAALIGFTIFAYVVTDKGSGRFVMNRRYLDYYLNDYSGWLKD 124

Query: 125 HLTNSRNWPKIRTCLPESDVCSK----LNQRYFAADQFFAVDISPLQSGCCKPPTACGYN 184
            +T++  W  I +C+ +S VC K    LN     A  F+  ++SP++SGCCKPPT CGY 
Sbjct: 125 RVTDNGYWRDIGSCVRDSGVCKKIGRDLNGVPETAHMFYFRNLSPVESGCCKPPTDCGYT 184

Query: 185 FVNPTLWLNPGDPMA-DPDCYIWSNDQTQLCYNCNSCKAGLLGNLRKEWRKANVVLIVTV 244
           +VN T+W+  G+ +  +PDC +W+NDQ  LCY C+SCKAG+LG+L+K WRK +V+ IV V
Sbjct: 185 YVNETVWIPGGEMVGPNPDCMLWNNDQRLLCYQCSSCKAGVLGSLKKSWRKVSVINIVVV 244

Query: 245 VILIWVYVIGCSAFKNAQ 257
           +IL+  YVI C+A++N +
Sbjct: 245 IILVIFYVIACAAYQNVK 262

The following BLAST results are available for this feature:

BLAST of CmaCh05G013910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUN5	5.7e-120	72.96	Tetraspanin-2 OS=Arabidopsis thaliana OX=3702 GN=TET2 PE=2 SV=1	[more]
Q9FIQ5	4.0e-81	51.87	Protein TORNADO 2 OS=Arabidopsis thaliana OX=3702 GN=TRN2 PE=1 SV=1	[more]
Q9M1E7	8.9e-65	43.40	Tetraspanin-3 OS=Arabidopsis thaliana OX=3702 GN=TET3 PE=1 SV=1	[more]
Q8S8Q6	1.5e-64	45.63	Tetraspanin-8 OS=Arabidopsis thaliana OX=3702 GN=TET8 PE=2 SV=1	[more]
Q9LSS4	8.4e-63	43.02	Tetraspanin-4 OS=Arabidopsis thaliana OX=3702 GN=TET4 PE=3 SV=1	[more]

BLAST of CmaCh05G013910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19580.1	4.1e-121	72.96	tetraspanin2	[more]
AT5G46700.1	2.8e-82	51.87	Tetraspanin family protein	[more]
AT3G45600.1	6.4e-66	43.40	tetraspanin3	[more]
AT2G23810.1	1.1e-65	45.63	tetraspanin8	[more]
AT5G60220.1	5.9e-64	43.02	tetraspanin4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00259	TMFOUR	coord: 6..29 score: 25.35 coord: 38..64 score: 21.75 coord: 65..93 score: 16.29
None	No IPR available	PANTHER	PTHR32191:SF0	TETRASPANIN-2	coord: 1..265
IPR018499	Tetraspanin/Peripherin	PFAM	PF00335	Tetraspanin	coord: 7..250 e-value: 4.4E-30 score: 105.1
IPR044991	Tetraspani, plant	PANTHER	PTHR32191	TETRASPANIN-8-RELATED	coord: 1..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G013910.1	CmaCh05G013910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0010305	leaf vascular tissue pattern formation
biological_process	GO:0009554	megasporogenesis
biological_process	GO:0009956	radial pattern formation
biological_process	GO:0009934	regulation of meristem structural organization
biological_process	GO:0010015	root morphogenesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma