CmaCh05G013350 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G013350
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionDNA mismatch repair protein
LocationCma_Chr05: 10098570 .. 10107316 (-)
RNA-Seq ExpressionCmaCh05G013350
SyntenyCmaCh05G013350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAATTAGGGCTCTTAAAAGGGCGCAAAAATTTGGCGCCAATTTTAACCATTGCAATTCACTTCTATACTGTCCTCTTCAGTCTTCCAGTTCTAACGAAGCTTTCCACAATTCATCGTGAAAAATGCAGCGCCAGAAATCTTTGTTATCCTTCTTCCAAAAATCTCCGTCCGAAAATCGGAGCTCCGATGGCGATACCTCCTCCGTCGCCCAGAGGCTCACTCGCTTTCCGGCCAAACCAAACGTTGCCGGTTTGGAGCAGCCGGCTATCCAGAATAATGCGGATCCCTCCCTGGAGATTAGAGGAACCGACACGCCGCCGGAGAAGGTGCCTTGTCAGATTTTGCCGGTGATTGAGAAGAACAGAGGTTCCTCTCTCTTTTCGAGCATCATGCACAAATTTGTGCGAGTCGATGATAAACACAAGGCAAACGAGAGGTAATGTTGATACTAACTAAGCGAGCAGGTCTTCGGATTCTTACTACATTTTGCTTTCTCCATTCGAATCGCGCAGTATACTATTCTTGTAATACTCTTGCATCGTTTTCTATTTTATAGAAGAACCAAACGCGTCTTTGTACTGACGAGTTCATGTAATACTTTTGCATCGTTTTCTCTTAATTTTAGAAGAACAAAACGTGGCTTATTCTATGATGTAGTTGCATTTTAATATCTGTGAATGAATCCTGCAGGGACGAGATTAAAAAAGATTCCTCTCAGAACGAGGTTTGGAAAGATTCTTCTCAGTTACCTTCCATTTCTGGTAAGGTTAATGATCCAATAGAACATACGGAACTAAAGGGAGCTTCTAGACATCATAGTAAACTCCACGCTGCAAATTTAAACGGACATAGAGGACCTGCCTTGGATATTGAAAGCGATGATGGCATTGGTGGACCAGAAACACCTGGCATGCGACCTTCTGCCTCTCGTTTAAAGAGATCTCAAGAGATTCCTCTTGTGGGTGGGAGTGCTGATTTGTTGCAGCATAGTACCAAAAGAATTAAACTCCTTCAGGACTCGATAAACTCAAACATGATTCACAATGAAGCTTCTGATGCAACTAGCAAATTTGAGTGGCTCAATCCCTCTCAAATTAGAGATGCTAATGGTAGAAGGCCTGACCATCCTCTTTATGATAAAAAAACATTATTCATACCACCTGACGTGCTGAAGAAAATGTCAGCGTCACAAAAACAATACTGGAATGTGAAATGTCAATATATGGACATTTTGCTTTTCTTCAAAGTGGTTAGTTTATATTATCGAACAGCATCATTGTATGAATTAGCTCCTGATTTCAATATACGTTTTTATCCTATGAATAGTTGTTCATTTCGTGTTACTGTGCTGAAATGGGTATCTCCACAATTTGCAACCATTTAAATTACTAGTATTTTGCTTACAAAGGTTTCATTAGAACTGTAATTGAAATGAGTTGTATTATCGTGAATTTTGTTATTGGTATGTCCAAATGTGAATCAATTTAAATAAATTTTGGATCCATCATAGAAGTAGAGATGAAAAGAAAAAAATAAAAATATGGGGAATATGAATTGTAGCCTTTACTTTTTCAAGGGATGTCATTTTCCTTCAAATTCAGAATCATTGTTGACTTTTGGGTTGAGATCCATATTTTCTGACCTATTCATTTTGGCACATACACTGATAGATTAATAAGGTATTGAACTTATTATTTGATAAGCTCAATTTTTCTCTATCTCAGTGAGGGGTTTTCCTCTTCTACACAGTTTATACTCTTGGTAGACTTTGCTTTCACTAGTGGATGCTTTTAAATATGTAATCAATAAACTACTTCAATTAGTTAATATAAGAATATGAATTTTCTTTTGCACATCACAGGGAAAGTTCTATGAGCTATATGAACAAGATGCTGAAATTGGTCACAAGGAGCTTGACTGGAAAATGACACTAAGTGGCGTTGGGAAATGTAGGCAGGTTAAATATTCATCAATCTGTTTTTTCCTGTGTATTTATTTCTTCATCTTTTAGTTATCCACATATCCCTGATATTACCTATTCTACTTAGGTCGGTGTTCCTGAAAGTGGGATTGATGATGCCGTTCAAAAGCTTGTTGCTCGTGGGTAAGGATAGATAGCTCTGTTATGTTGTTCATCTGAATTCTTATTAATGTTTCTCCAGATTGTATCCTATAAGATGTAAGCTTTTGTTCTCACTTGATGCACCGAGAGCAAAGGAGTCTAAACAGCATATGAGTAAACTAGAGGCATTAGAGCTGATTAAAAACGCTAATGAAAATTTACTTCAGCATCATGTTTGCATGCAATATATATATATGTATGTATATATATATATTTGTGAGCATGTATGGTGAGGCTAACACATTCTTGTGACAATCTTTATGAAGACATAAAGTTGGGCGAATTGAGCAATTGGAATCTTCGGATCAAACAAAAACCAGAGGTGCAAATTCTGTAAGTTTGTCGCTTCAGATATCACGTGGACATTGATTCTGATTTCTGCGTATTCATTTCAAAGTTTTGTCTTTTTCTTCTTTTTTACCTGGATTTTTGTGCTGAGCGTTTGTGTAGATGTACATCTAGATGGTTTTTAATTTGGATTTTCTAAATTATCGAAAGTCATTCCATTGTGCTTCTTTCTACTCGTTCCATATATTATACATCTGGATTGTATACTTTTAATGATTTAATTATGACTTGTTAATTTCAGGTGATACCTCGGAAATTGGTACAGGTTGTTACTCCATCAACCAAGGTTGATGGTGATATTGGGCCTGACGCTGTTCATTTGCTTGCCATCAAAGAGGTATTAGAAATTAATTCAATTCTTGTATGTAATTGATATTTGGAATTGTTAGAAAATTTAAGATTGCGGTTCTAGATAAACTTGTCCATTTTTCTTTCAGTAATAAATTTGAGGCATATATTTTATTTTTCTTCATTTTTTCAAACAAATTCTAAGAAGTTCTTACTCACTGAAAATTTCACAGTTAACCAACAGTTGAGGGATCTATTCCATGGCATTACCGTTTAAAATCTCATTTTGGACTAGGAAATTACTGTTAGATGATGAAAATAAACATTACATCATAAAGCTACATTGACAGTATGCTTCATTGGAATTTTTCTCTAGGAGAGTTGTGGGCTGGATAATAATTCAATTGCATATGGGTTTGCCTTTGTTGATTGTGCTGCTTTAAAATTTTGGACTGGCTCTATCAAAGATGATGCTTCCTGCGCTGCTCTCGGTGCCCTCTTGATGCAAGTAGGCAATTCAAAATTTTCATTTTTGCATTTCTGTTATTTGCTTTTGCAAGTTTGATAGTAATATGTGCATTTGTGGTTTCTCTAGGTCTCTCCAAAGGAAATAATATATGAAGCTAGAGGTAAGAATCTTTCCTCTCATCTTGGACTTTAGGCTTTTATTTAATTGATTGATATATTTATTTTTGGCGAACTTTCCTTCAACGTCCTCAATTTTATTTTGTGCAGGATTAACTAAAGAAACACATAAAGTTCTAAAGAAGTACTCGCCAACTGGTTGGTTCTTTTCGTGTCTTTATAATAAGAAATTTTCTTTTATGAGCGAAAAGGTTACCTTTTTATTTATCACTTGTCATATGTGCTCGTGCATGAGCAGACACAATACATGTCTGAGTTTACGTCTCCTCTTTTGCTACTTTTACTTGTCTATCTTCTAATTCAATTTTTAAGTTAATGCAATTTTATTATACATTGTTCTCAAGTCATTAGATTTAAATGGAAAGTGATCAACTTTTATTTATGTGTTTTGATGTTATTTCTTTAGAAATATTGTCCCCTTAGTCTCCAAAATGACTGATTGTCGTTTTACTCTGAATCAATAATATATTTTAAACAATTGAGTTGGTGATCAGAATATTATACTGACCATTGATTTCTTAGGTATCTCTTATGTTCTTGTTAATAACCAAGGGTTGTTTGGAAGTGTTTTGAAAAACTAGCCTTTTGTTTTTTATCCACAATGTTTGAGGTGTAATATTTATTCTCATAGTTCTTATTCTATTCATCTTGTAGGTTCCACCGCTCTAGAATCCACATCAGGGTCGCCAGTTACAGACTTTCTGGAAGCTTCAGAGGTTAAACTTTTGATCCAGTCTAAAGGTTATTTTAAAGGCTCCTTGAATTCGTGGAATCACACGATTGAAAGCACAGACCATGATGACATTGCTCTATGTGCTCTTGGAGGACTTATTAATCATATGTCAAGGCTGATGGTAAATATGGTTCTCGGAGACACTGATATATGTCCTATTACATAAACTGTTGGCATTTATAATTTCCTACTTTTTACAGTTGGATGATGTCTTGCGGGAGGGAGCTGTACTGCCATACCAAGTATACAGAGGCTGTCTAAGAATGGATGGACAAACAATGGTTAATCTTGAAATTTTCAGAAACAATGATGATGGTGGTCTATCAGGTATGCGTTTGTTTCAAATCCAAGGTCTGAAGGACCAGATCAACAAATTTTATTAATTACGATACTTATGTTGCAGGTACACTGTACAAGTATCTTGATAATTGTGTAACATCATCAGGCAAGCGGCTTTTAAGGTTGTGGATCTGTCATCCTCTTAAAGATGTTGAAGAGATTAATAATAGGCTTAATGTGGTGGAAAAACTGATGGCACAATCTGAAGTTATGACACTTCTTGGTACCACCTACCTTCGCAAGCTTCCAGACTTAGAGAGGCTGTTTGGGCAGATCAAGGCTACGGTTCAGTCATCTGCTTCTCTTGTATTACCATTGATTCGCAAGAAGTTACAGAAACGGCGGGTAAGCATAATGTATGGTAATCAGCAAATCTAATGTCATTACTACACTCTCAATATGTTGAATGGGAAGTATGGGATTCTTACACTGAATATATGCGTTTGAAAGTTCGAGAGATTTTAGTTTTGATTTTCTTTGTGATTTGGAGGCGTTAGATTTTGTCACTTGCGTGGTCGTTACCCAAGGTTATCACAAATCATTCTTGTTTCTTTTAATTTGATCGTGGGGGTGTAATTGTAAAATTTTGTATTATTGCTCATATGATATTTTACGTCCGCTTCATTTGCATTTGAAATTACTCTTGTTTGAAGTTGCACCAAGGAAGCTCTCTTTTCAGTTTGTGTATTATATCGGTATTAGGAATCATGGACCCTCTCACAATGGTATGATATTGTTTACTTTGAGCATTCTTATGGCTTTGCTTTTGGTTTCCCAAAAGGCTTCATACCAGTGGAGATGTATTCCTTACTTATAAACCCATGATTAACCCCTTTATTAGCCGATGTGGGACTCCTCTCCCAACAATCCTCCCCTTGAATAAAGTATACCATAGGGCCTCCCCACAATCCTCCCCTCGAACAAAGTATATCATAGGGCCTCCCTTGAGGCCTACGTAGCCCTGGAATAGCCTCCTCTTAATCGAGGCTCGACTCCTTCTCTGGAGCCCTGAACAAAGTACACTCTTTGTTCGACACTTCAGGCACTTTTGACTACACCTTTGAGGCTCACAACTTCTTTATTTGACATTTGAGGATTCTATTGACATGACTAAATTAAGGGCATGACTATGATACCGTGTTAGAAACCACGACTCTTCACAATGGTATGATGTTTGTCCACTTTGAGCATAGACTCTCATGACTTTGTTTTTAGTTTCCCCAAAGGGCCTTATACCAAGGAAGCTCTCTCTTTTCAGTTTGTGTACTAGATTACTTCTGTAATTTATCCTGAAGCTCTCTATGTATTTGCTGTACATGAACCAGCAATTTGCATATATTAACACACTGAGTGAACACTGATAATATGGTGCAGGTGAAATTATTCGGATCTCTGGTGAAGGGCCTCAGGACTGGATTGGATTTATTAATTCAAGTTCAGAAGGAAGGTTGCATTATTTCTCTATTAAAAGTAGTTAAACTGCCACAGCTCACCAGCAATGGTGGGCTTGATCAATTCCTCACTCAATTTGAAGCAGCTGTAGATAGCGAATTTCCAAATTATCAGGTTTTCCCTCGCCTTTCTTTTATCATCTTATGCCTCATTCTATAGTTTTATAATCCTCAATACTGCATCTTATATCTTCTTCTATGGAATCCTTCGCTTGAGATCTCAGCTAAAAGTGTTTGTTTGTAATCTTTTCTCAGAACCATGATGTAACGGATTCCGATGCTGAAAGACTCTCTATATTAATCGAGTTATTTGTGGAAAAAGCTACTGAATGGTGTGAAGTAATTCATGCCCTCAATTGTATTGACGTGCTGAGATCATTTGCAGTAATTGGTCATTCATCTAGAGGGTCCATGTCTAGACCTATTATTTTGCCTCAATTGAGTAATTCAACGACGAGTCCAGAAAAGCAGGGGCCAGTTCTTCAAATTAATGGGCTATGGCATCCATATGCCCTTGTGGAGAACGGAGAATCACCAGTTCCTAATGATATGATCCTTGGTCCTGATAAAGATGGCTACCATCCCCATACTCTACTGCTAACTGGACCAAACATGGGCGGGAAATCAACACTTCTTCGTTCTACTTGTCTAGCTGTTATACTTGCACAGGTATGTAGCAAATTTCTTTATCATAGCGGCAAGATATTTTTGAAAATTAAGCTTATAATACTTTGGAAAGATGAAAACCATGAACACTTTTTTAAATTAAAAAAAAAAACCAAAACCAAAGGGTTATAAACGAAAGCTAAAATAGATAAAACATTATTATTTCATCCCCCCTCTGGTTGAATTGCAGTTGGGTTGCTACGTGCCTTGTGAGACATGCACGCTCTCGGTTGTGGATACCATCTTTACGAGACTTGGTGCTACGGATCGAATTATGACAGGAGAAAGTAAGAGTTTATTTATTTTTATTGTCATAAGAAATACTTTTAAATAAAATCAAATTTTCTATTGATGCTTTCTAAATAATTAATCATTTAGTATGTTTAGCATCTTAAATTATTTTAGATGATTAAATATATTTTTTTAAAGAAATTTAATCAATAAAAAGTAGTAAAAACTTTTGAATTAGTTTAGAAGTTATTTTTGAAGAAACTTTTGCGTGATAATTTATCCAAAATAACTTTTGAATTGATTCAATTTTTCAGAGTTTTTTAATTGAGATTTGTTTTTTTTTTTTTAAAGAAACACATTTAGGAAGTTAAACCCACTTTAAATTATTTGTTTTTTTCAAGTGAACTATGAATTCCCGAAGGATGGTGCATGGAAAATGAGTAGATATAAATTTCAGTTGTACCAAATATTTCTTGTGAAACAATAACAATCCATGTCTCTGTACTCTGTAGGTACTTTCCTTGTTGAATGCTCAGAAACAGCTTCAGTTCTCCAACATGCCACTCAGGACTCTCTTGTTATTCTTGACGAACTCGGACGAGGAACGAGCACATTTGATGGCTATGCCATTGCATATGCTGTGAGTTTTGTTTTCATTTAATCCATCTCATTCACAATTATTCTCGAGCTTAAAATTTCTACCATTGATTTTACATAGTTAACCAAAATAAAAATAAAAAAATCTTTTTCTAGTATACATGCTTTCATCTGTAACTCTGCCTCGAAGCAAGCGTCTGCATTCTAAGGTCTACTTTACTATAGATAGAAATACATGAAGTCAGTTGATTTGGTCTATGCATTACTAATTTACGCTTGATATTTTACTTTTATGTTCATTTTGAATGTTTATTTTAAATTTACATCATCCTGCTACTTACGAAGGTATTTATAACTCATGAATTCATTCTGACTGGAAATTTTGAGATTCAAAAGAGAGTTTATGTTCAAAATCACTTCGAAATATGTCTTCAATTATGTTAAATCAATTCAATGTTTGATTCTACACATTTAAGCGTAGTTTTTATACCATTAAAATTGATTTTGAAAATGACAAATAATTTAAAATCACTCCCAAGTTTGTCCTAAGACATGGTGCGATGATTATACCTCGAGCATGGGCATAATTCATGTCGGAGCGATGTAGTTTACATTTGCTGCTTGATTGTCGCATAAACTAAAAAATATCATTTGCTTGCAAATAATCCCCTATTGATCAAACAATATTGATGTCTATGAATCCTTTATTCAGGTGTTTCGCCATCTGATAGAAAAGGTGAACTGTCGACTTCTATTTGCTACTCACTACCATCCTCTAACAAAGGAGTTTGCCTCTCATCCTCACGTCATGCTTCAACACATGGCCTGCGCATTCAAGGACCATGAGCTGGTTTTTCTATATCGCCTCCGCTCCGGAGCATGCCCTGAGAGCTACGGGTTGCAAGTAGCAACCATGGCTGGAATCCCGGGGCGAGTCGTTGAAGCAGCTTCAAAAGCCAGCCAAATGCTGAAGAAAACCATCAAAGAGAGTTTCAAATCGAGCGAACAACGCTCCCAGTTTTCAACTCTTCATGAAGAGTGGTTGAAAACTCTAATCGCGGTCTCGCAGTTTCGAGGTAATGATCTCGACGAAAATGATGCTTTTGATACTTTATTTTGTTTATGGTATGAGCTCAAGAGATCATATCACTGCTAGGTTGATAATTGTATGATAGGATATATATGGGATGTAGGAGAAAGCATGACGTAGGAAATTTCTTCTGTGAAGTTTTTCATCTAAATGCGGAATTTTAGAATTTAGAGAATTTTTGTATTTAAGAGAATGCATTTAGGTCCTTTTAATCTTTGAGGACTTATATTTTGTA

mRNA sequence

CAAAATTAGGGCTCTTAAAAGGGCGCAAAAATTTGGCGCCAATTTTAACCATTGCAATTCACTTCTATACTGTCCTCTTCAGTCTTCCAGTTCTAACGAAGCTTTCCACAATTCATCGTGAAAAATGCAGCGCCAGAAATCTTTGTTATCCTTCTTCCAAAAATCTCCGTCCGAAAATCGGAGCTCCGATGGCGATACCTCCTCCGTCGCCCAGAGGCTCACTCGCTTTCCGGCCAAACCAAACGTTGCCGGTTTGGAGCAGCCGGCTATCCAGAATAATGCGGATCCCTCCCTGGAGATTAGAGGAACCGACACGCCGCCGGAGAAGGTGCCTTGTCAGATTTTGCCGGTGATTGAGAAGAACAGAGGTTCCTCTCTCTTTTCGAGCATCATGCACAAATTTGTGCGAGTCGATGATAAACACAAGGCAAACGAGAGGGACGAGATTAAAAAAGATTCCTCTCAGAACGAGGTTTGGAAAGATTCTTCTCAGTTACCTTCCATTTCTGGTAAGGTTAATGATCCAATAGAACATACGGAACTAAAGGGAGCTTCTAGACATCATAGTAAACTCCACGCTGCAAATTTAAACGGACATAGAGGACCTGCCTTGGATATTGAAAGCGATGATGGCATTGGTGGACCAGAAACACCTGGCATGCGACCTTCTGCCTCTCGTTTAAAGAGATCTCAAGAGATTCCTCTTGTGGGTGGGAGTGCTGATTTGTTGCAGCATAGTACCAAAAGAATTAAACTCCTTCAGGACTCGATAAACTCAAACATGATTCACAATGAAGCTTCTGATGCAACTAGCAAATTTGAGTGGCTCAATCCCTCTCAAATTAGAGATGCTAATGGTAGAAGGCCTGACCATCCTCTTTATGATAAAAAAACATTATTCATACCACCTGACGTGCTGAAGAAAATGTCAGCGTCACAAAAACAATACTGGAATGTGAAATGTCAATATATGGACATTTTGCTTTTCTTCAAAGTGGGAAAGTTCTATGAGCTATATGAACAAGATGCTGAAATTGGTCACAAGGAGCTTGACTGGAAAATGACACTAAGTGGCGTTGGGAAATGTAGGCAGGTCGGTGTTCCTGAAAGTGGGATTGATGATGCCGTTCAAAAGCTTGTTGCTCGTGGACATAAAGTTGGGCGAATTGAGCAATTGGAATCTTCGGATCAAACAAAAACCAGAGGTGCAAATTCTGTGATACCTCGGAAATTGGTACAGGTTGTTACTCCATCAACCAAGGTTGATGGTGATATTGGGCCTGACGCTGTTCATTTGCTTGCCATCAAAGAGGAGAGTTGTGGGCTGGATAATAATTCAATTGCATATGGGTTTGCCTTTGTTGATTGTGCTGCTTTAAAATTTTGGACTGGCTCTATCAAAGATGATGCTTCCTGCGCTGCTCTCGGTGCCCTCTTGATGCAAGTCTCTCCAAAGGAAATAATATATGAAGCTAGAGGATTAACTAAAGAAACACATAAAGTTCTAAAGAAGTACTCGCCAACTGGTTCCACCGCTCTAGAATCCACATCAGGGTCGCCAGTTACAGACTTTCTGGAAGCTTCAGAGGTTAAACTTTTGATCCAGTCTAAAGGTTATTTTAAAGGCTCCTTGAATTCGTGGAATCACACGATTGAAAGCACAGACCATGATGACATTGCTCTATGTGCTCTTGGAGGACTTATTAATCATATGTCAAGGCTGATGTTGGATGATGTCTTGCGGGAGGGAGCTGTACTGCCATACCAAGTATACAGAGGCTGTCTAAGAATGGATGGACAAACAATGGTTAATCTTGAAATTTTCAGAAACAATGATGATGGTGGTCTATCAGGTACACTGTACAAGTATCTTGATAATTGTGTAACATCATCAGGCAAGCGGCTTTTAAGGTTGTGGATCTGTCATCCTCTTAAAGATGTTGAAGAGATTAATAATAGGCTTAATGTGGTGGAAAAACTGATGGCACAATCTGAAGTTATGACACTTCTTGGTACCACCTACCTTCGCAAGCTTCCAGACTTAGAGAGGCTGTTTGGGCAGATCAAGGCTACGGTTCAGTCATCTGCTTCTCTTGTATTACCATTGATTCGCAAGAAGTTACAGAAACGGCGGGTGAAATTATTCGGATCTCTGGTGAAGGGCCTCAGGACTGGATTGGATTTATTAATTCAAGTTCAGAAGGAAGGTTGCATTATTTCTCTATTAAAAGTAGTTAAACTGCCACAGCTCACCAGCAATGGTGGGCTTGATCAATTCCTCACTCAATTTGAAGCAGCTGTAGATAGCGAATTTCCAAATTATCAGAACCATGATGTAACGGATTCCGATGCTGAAAGACTCTCTATATTAATCGAGTTATTTGTGGAAAAAGCTACTGAATGGTGTGAAGTAATTCATGCCCTCAATTGTATTGACGTGCTGAGATCATTTGCAGTAATTGGTCATTCATCTAGAGGGTCCATGTCTAGACCTATTATTTTGCCTCAATTGAGTAATTCAACGACGAGTCCAGAAAAGCAGGGGCCAGTTCTTCAAATTAATGGGCTATGGCATCCATATGCCCTTGTGGAGAACGGAGAATCACCAGTTCCTAATGATATGATCCTTGGTCCTGATAAAGATGGCTACCATCCCCATACTCTACTGCTAACTGGACCAAACATGGGCGGGAAATCAACACTTCTTCGTTCTACTTGTCTAGCTGTTATACTTGCACAGTTGGGTTGCTACGTGCCTTGTGAGACATGCACGCTCTCGGTTGTGGATACCATCTTTACGAGACTTGGTGCTACGGATCGAATTATGACAGGAGAAAGTACTTTCCTTGTTGAATGCTCAGAAACAGCTTCAGTTCTCCAACATGCCACTCAGGACTCTCTTGTTATTCTTGACGAACTCGGACGAGGAACGAGCACATTTGATGGCTATGCCATTGCATATGCTGTGTTTCGCCATCTGATAGAAAAGGTGAACTGTCGACTTCTATTTGCTACTCACTACCATCCTCTAACAAAGGAGTTTGCCTCTCATCCTCACGTCATGCTTCAACACATGGCCTGCGCATTCAAGGACCATGAGCTGGTTTTTCTATATCGCCTCCGCTCCGGAGCATGCCCTGAGAGCTACGGGTTGCAAGTAGCAACCATGGCTGGAATCCCGGGGCGAGTCGTTGAAGCAGCTTCAAAAGCCAGCCAAATGCTGAAGAAAACCATCAAAGAGAGTTTCAAATCGAGCGAACAACGCTCCCAGTTTTCAACTCTTCATGAAGAGTGGTTGAAAACTCTAATCGCGGTCTCGCAGTTTCGAGGTAATGATCTCGACGAAAATGATGCTTTTGATACTTTATTTTGTTTATGGTATGAGCTCAAGAGATCATATCACTGCTAGGTTGATAATTGTATGATAGGATATATATGGGATGTAGGAGAAAGCATGACGTAGGAAATTTCTTCTGTGAAGTTTTTCATCTAAATGCGGAATTTTAGAATTTAGAGAATTTTTGTATTTAAGAGAATGCATTTAGGTCCTTTTAATCTTTGAGGACTTATATTTTGTA

Coding sequence (CDS)

ATGCAGCGCCAGAAATCTTTGTTATCCTTCTTCCAAAAATCTCCGTCCGAAAATCGGAGCTCCGATGGCGATACCTCCTCCGTCGCCCAGAGGCTCACTCGCTTTCCGGCCAAACCAAACGTTGCCGGTTTGGAGCAGCCGGCTATCCAGAATAATGCGGATCCCTCCCTGGAGATTAGAGGAACCGACACGCCGCCGGAGAAGGTGCCTTGTCAGATTTTGCCGGTGATTGAGAAGAACAGAGGTTCCTCTCTCTTTTCGAGCATCATGCACAAATTTGTGCGAGTCGATGATAAACACAAGGCAAACGAGAGGGACGAGATTAAAAAAGATTCCTCTCAGAACGAGGTTTGGAAAGATTCTTCTCAGTTACCTTCCATTTCTGGTAAGGTTAATGATCCAATAGAACATACGGAACTAAAGGGAGCTTCTAGACATCATAGTAAACTCCACGCTGCAAATTTAAACGGACATAGAGGACCTGCCTTGGATATTGAAAGCGATGATGGCATTGGTGGACCAGAAACACCTGGCATGCGACCTTCTGCCTCTCGTTTAAAGAGATCTCAAGAGATTCCTCTTGTGGGTGGGAGTGCTGATTTGTTGCAGCATAGTACCAAAAGAATTAAACTCCTTCAGGACTCGATAAACTCAAACATGATTCACAATGAAGCTTCTGATGCAACTAGCAAATTTGAGTGGCTCAATCCCTCTCAAATTAGAGATGCTAATGGTAGAAGGCCTGACCATCCTCTTTATGATAAAAAAACATTATTCATACCACCTGACGTGCTGAAGAAAATGTCAGCGTCACAAAAACAATACTGGAATGTGAAATGTCAATATATGGACATTTTGCTTTTCTTCAAAGTGGGAAAGTTCTATGAGCTATATGAACAAGATGCTGAAATTGGTCACAAGGAGCTTGACTGGAAAATGACACTAAGTGGCGTTGGGAAATGTAGGCAGGTCGGTGTTCCTGAAAGTGGGATTGATGATGCCGTTCAAAAGCTTGTTGCTCGTGGACATAAAGTTGGGCGAATTGAGCAATTGGAATCTTCGGATCAAACAAAAACCAGAGGTGCAAATTCTGTGATACCTCGGAAATTGGTACAGGTTGTTACTCCATCAACCAAGGTTGATGGTGATATTGGGCCTGACGCTGTTCATTTGCTTGCCATCAAAGAGGAGAGTTGTGGGCTGGATAATAATTCAATTGCATATGGGTTTGCCTTTGTTGATTGTGCTGCTTTAAAATTTTGGACTGGCTCTATCAAAGATGATGCTTCCTGCGCTGCTCTCGGTGCCCTCTTGATGCAAGTCTCTCCAAAGGAAATAATATATGAAGCTAGAGGATTAACTAAAGAAACACATAAAGTTCTAAAGAAGTACTCGCCAACTGGTTCCACCGCTCTAGAATCCACATCAGGGTCGCCAGTTACAGACTTTCTGGAAGCTTCAGAGGTTAAACTTTTGATCCAGTCTAAAGGTTATTTTAAAGGCTCCTTGAATTCGTGGAATCACACGATTGAAAGCACAGACCATGATGACATTGCTCTATGTGCTCTTGGAGGACTTATTAATCATATGTCAAGGCTGATGTTGGATGATGTCTTGCGGGAGGGAGCTGTACTGCCATACCAAGTATACAGAGGCTGTCTAAGAATGGATGGACAAACAATGGTTAATCTTGAAATTTTCAGAAACAATGATGATGGTGGTCTATCAGGTACACTGTACAAGTATCTTGATAATTGTGTAACATCATCAGGCAAGCGGCTTTTAAGGTTGTGGATCTGTCATCCTCTTAAAGATGTTGAAGAGATTAATAATAGGCTTAATGTGGTGGAAAAACTGATGGCACAATCTGAAGTTATGACACTTCTTGGTACCACCTACCTTCGCAAGCTTCCAGACTTAGAGAGGCTGTTTGGGCAGATCAAGGCTACGGTTCAGTCATCTGCTTCTCTTGTATTACCATTGATTCGCAAGAAGTTACAGAAACGGCGGGTGAAATTATTCGGATCTCTGGTGAAGGGCCTCAGGACTGGATTGGATTTATTAATTCAAGTTCAGAAGGAAGGTTGCATTATTTCTCTATTAAAAGTAGTTAAACTGCCACAGCTCACCAGCAATGGTGGGCTTGATCAATTCCTCACTCAATTTGAAGCAGCTGTAGATAGCGAATTTCCAAATTATCAGAACCATGATGTAACGGATTCCGATGCTGAAAGACTCTCTATATTAATCGAGTTATTTGTGGAAAAAGCTACTGAATGGTGTGAAGTAATTCATGCCCTCAATTGTATTGACGTGCTGAGATCATTTGCAGTAATTGGTCATTCATCTAGAGGGTCCATGTCTAGACCTATTATTTTGCCTCAATTGAGTAATTCAACGACGAGTCCAGAAAAGCAGGGGCCAGTTCTTCAAATTAATGGGCTATGGCATCCATATGCCCTTGTGGAGAACGGAGAATCACCAGTTCCTAATGATATGATCCTTGGTCCTGATAAAGATGGCTACCATCCCCATACTCTACTGCTAACTGGACCAAACATGGGCGGGAAATCAACACTTCTTCGTTCTACTTGTCTAGCTGTTATACTTGCACAGTTGGGTTGCTACGTGCCTTGTGAGACATGCACGCTCTCGGTTGTGGATACCATCTTTACGAGACTTGGTGCTACGGATCGAATTATGACAGGAGAAAGTACTTTCCTTGTTGAATGCTCAGAAACAGCTTCAGTTCTCCAACATGCCACTCAGGACTCTCTTGTTATTCTTGACGAACTCGGACGAGGAACGAGCACATTTGATGGCTATGCCATTGCATATGCTGTGTTTCGCCATCTGATAGAAAAGGTGAACTGTCGACTTCTATTTGCTACTCACTACCATCCTCTAACAAAGGAGTTTGCCTCTCATCCTCACGTCATGCTTCAACACATGGCCTGCGCATTCAAGGACCATGAGCTGGTTTTTCTATATCGCCTCCGCTCCGGAGCATGCCCTGAGAGCTACGGGTTGCAAGTAGCAACCATGGCTGGAATCCCGGGGCGAGTCGTTGAAGCAGCTTCAAAAGCCAGCCAAATGCTGAAGAAAACCATCAAAGAGAGTTTCAAATCGAGCGAACAACGCTCCCAGTTTTCAACTCTTCATGAAGAGTGGTTGAAAACTCTAATCGCGGTCTCGCAGTTTCGAGGTAATGATCTCGACGAAAATGATGCTTTTGATACTTTATTTTGTTTATGGTATGAGCTCAAGAGATCATATCACTGCTAG

Protein sequence

MQRQKSLLSFFQKSPSENRSSDGDTSSVAQRLTRFPAKPNVAGLEQPAIQNNADPSLEIRGTDTPPEKVPCQILPVIEKNRGSSLFSSIMHKFVRVDDKHKANERDEIKKDSSQNEVWKDSSQLPSISGKVNDPIEHTELKGASRHHSKLHAANLNGHRGPALDIESDDGIGGPETPGMRPSASRLKRSQEIPLVGGSADLLQHSTKRIKLLQDSINSNMIHNEASDATSKFEWLNPSQIRDANGRRPDHPLYDKKTLFIPPDVLKKMSASQKQYWNVKCQYMDILLFFKVGKFYELYEQDAEIGHKELDWKMTLSGVGKCRQVGVPESGIDDAVQKLVARGHKVGRIEQLESSDQTKTRGANSVIPRKLVQVVTPSTKVDGDIGPDAVHLLAIKEESCGLDNNSIAYGFAFVDCAALKFWTGSIKDDASCAALGALLMQVSPKEIIYEARGLTKETHKVLKKYSPTGSTALESTSGSPVTDFLEASEVKLLIQSKGYFKGSLNSWNHTIESTDHDDIALCALGGLINHMSRLMLDDVLREGAVLPYQVYRGCLRMDGQTMVNLEIFRNNDDGGLSGTLYKYLDNCVTSSGKRLLRLWICHPLKDVEEINNRLNVVEKLMAQSEVMTLLGTTYLRKLPDLERLFGQIKATVQSSASLVLPLIRKKLQKRRVKLFGSLVKGLRTGLDLLIQVQKEGCIISLLKVVKLPQLTSNGGLDQFLTQFEAAVDSEFPNYQNHDVTDSDAERLSILIELFVEKATEWCEVIHALNCIDVLRSFAVIGHSSRGSMSRPIILPQLSNSTTSPEKQGPVLQINGLWHPYALVENGESPVPNDMILGPDKDGYHPHTLLLTGPNMGGKSTLLRSTCLAVILAQLGCYVPCETCTLSVVDTIFTRLGATDRIMTGESTFLVECSETASVLQHATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPHVMLQHMACAFKDHELVFLYRLRSGACPESYGLQVATMAGIPGRVVEAASKASQMLKKTIKESFKSSEQRSQFSTLHEEWLKTLIAVSQFRGNDLDENDAFDTLFCLWYELKRSYHC
Homology
[Close]
BLAST of CmaCh05G013350 vs. ExPASy Swiss-Prot
Match: Q9SMV7 (DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana OX=3702 GN=MSH7 PE=1 SV=1)

HSP 1 Score: 1286.2 bits (3327), Expect = 0.0e+00
Identity = 683/1123 (60.82%), Postives = 837/1123 (74.53%), Query Frame = 0 

Query: 1    MQRQKSLLSFFQKSPSENR----SSDGDTSSVAQRLTRFPAKPNVAGLEQP---AIQNNA 60
            MQRQ+S+LSFFQK  +       S D  +        RF  K   A  +     A+  + 
Sbjct: 1    MQRQRSILSFFQKPTAATTKGLVSGDAASGGGGSGGPRFNVKEGDAKGDASVRFAVSKSV 60

Query: 61   DPSLEIRGTDTPPEKVPCQIL-----PVIEKNRGSSLFSSIMHKFVRVDDKHKANERDEI 120
            D   E+RGTDTPPEKVP ++L     P       SSLFS+IMHKFV+VDD+  + ER   
Sbjct: 61   D---EVRGTDTPPEKVPRRVLPSGFKPAESAGDASSLFSNIMHKFVKVDDRDCSGER--- 120

Query: 121  KKDSSQNEVWKDSSQLPSISGKVNDPIEHTELKGASRHHSKLHAANLNGHR--GPALDIE 180
               S ++ V  + S   S+  K ND I         +   + HA + +G        DI 
Sbjct: 121  ---SREDVVPLNDS---SLCMKANDVIPQFR-SNNGKTQERNHAFSFSGRAELRSVEDIG 180

Query: 181  SDDGIGGPETPGMRPSASRLKR--SQEIPLVGGSADLLQHSTKRIKLLQDSINSNMIHNE 240
             D  + GPETPGMRP ASRLKR    E+        +L  S KR+K+LQD +       E
Sbjct: 181  VDGDVPGPETPGMRPRASRLKRVLEDEMTFKEDKVPVLD-SNKRLKMLQDPVCGE--KKE 240

Query: 241  ASDATSKFEWLNPSQIRDANGRRPDHPLYDKKTLFIPPDVLKKMSASQKQYWNVKCQYMD 300
             ++ T KFEWL  S+IRDAN RRPD PLYD+KTL IPPDV KKMSASQKQYW+VK +YMD
Sbjct: 241  VNEGT-KFEWLESSRIRDANRRRPDDPLYDRKTLHIPPDVFKKMSASQKQYWSVKSEYMD 300

Query: 301  ILLFFKVGKFYELYEQDAEIGHKELDWKMTLSGVGKCRQVGVPESGIDDAVQKLVARGHK 360
            I+LFFKVGKFYELYE DAE+GHKELDWKMT+SGVGKCRQVG+ ESGID+AVQKL+ARG+K
Sbjct: 301  IVLFFKVGKFYELYELDAELGHKELDWKMTMSGVGKCRQVGISESGIDEAVQKLLARGYK 360

Query: 361  VGRIEQLESSDQTKTRGANSVIPRKLVQVVTPSTKVDGDIGPDAVHLLAIKEESCGLDNN 420
            VGRIEQLE+SDQ K RGAN++IPRKLVQV+TPST  +G+IGPDAVHLLAIKE    L   
Sbjct: 361  VGRIEQLETSDQAKARGANTIIPRKLVQVLTPSTASEGNIGPDAVHLLAIKEIKMELQKC 420

Query: 421  SIAYGFAFVDCAALKFWTGSIKDDASCAALGALLMQVSPKEIIYEARGLTKETHKVLKKY 480
            S  YGFAFVDCAAL+FW GSI DDASCAALGALLMQVSPKE++Y+++GL++E  K L+KY
Sbjct: 421  STVYGFAFVDCAALRFWVGSISDDASCAALGALLMQVSPKEVLYDSKGLSREAQKALRKY 480

Query: 481  SPTGSTALESTSGSPVTDFLEASEVKLLIQSKGYFKGSLNSWNHTIESTDHDDIALCALG 540
            + TGSTA++      V    +A+ V+ +I+S GYFKGS  SWN  ++  +  D+AL ALG
Sbjct: 481  TLTGSTAVQLAPVPQVMGDTDAAGVRNIIESNGYFKGSSESWNCAVDGLNECDVALSALG 540

Query: 541  GLINHMSRLMLDDVLREGAVLPYQVYRGCLRMDGQTMVNLEIFRNNDDGGLSGTLYKYLD 600
             LINH+SRL L+DVL+ G + PYQVYRGCLR+DGQTMVNLEIF N+ DGG SGTLYKYLD
Sbjct: 541  ELINHLSRLKLEDVLKHGDIFPYQVYRGCLRIDGQTMVNLEIFNNSCDGGPSGTLYKYLD 600

Query: 601  NCVTSSGKRLLRLWICHPLKDVEEINNRLNVVEKLMAQSEVMTLLGTTYLRKLPDLERLF 660
            NCV+ +GKRLLR WICHPLKDVE IN RL+VVE+  A SE M + G  YL KLPDLERL 
Sbjct: 601  NCVSPTGKRLLRNWICHPLKDVESINKRLDVVEEFTANSESMQITG-QYLHKLPDLERLL 660

Query: 661  GQIKATVQSSASLVLPLIRKKLQKRRVKLFGSLVKGLRTGLDLLIQVQKEGCIISLL-KV 720
            G+IK++V+SSAS++  L+ KK+ K+RVK FG +VKG R+G+DLL+ +QKE  ++SLL K+
Sbjct: 661  GRIKSSVRSSASVLPALLGKKVLKQRVKAFGQIVKGFRSGIDLLLALQKESNMMSLLYKL 720

Query: 721  VKLPQLTSNGGLDQFLTQFEAAVDSEFPNYQNHDVTDSDAERLSILIELFVEKATEWCEV 780
             KLP L    GL+ FL+QFEAA+DS+FPNYQN DVTD +AE L+ILIELF+E+AT+W EV
Sbjct: 721  CKLPILVGKSGLELFLSQFEAAIDSDFPNYQNQDVTDENAETLTILIELFIERATQWSEV 780

Query: 781  IHALNCIDVLRSFAVIGHSSRGSMSRPIILPQLSNSTTSPEKQGPVLQINGLWHPYALVE 840
            IH ++C+DVLRSFA+    S GSM+RP+I P+   +  + + +GP+L+I GLWHP+A+  
Sbjct: 781  IHTISCLDVLRSFAIAASLSAGSMARPVIFPESEATDQNQKTKGPILKIQGLWHPFAVAA 840

Query: 841  NGESPVPNDMILGP---DKDGYHPHTLLLTGPNMGGKSTLLRSTCLAVILAQLGCYVPCE 900
            +G+ PVPND++LG         HP +LLLTGPNMGGKSTLLR+TCLAVI AQLGCYVPCE
Sbjct: 841  DGQLPVPNDILLGEARRSSGSIHPRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCE 900

Query: 901  TCTLSVVDTIFTRLGATDRIMTGESTFLVECSETASVLQHATQDSLVILDELGRGTSTFD 960
            +C +S+VDTIFTRLGA+DRIMTGESTFLVEC+ETASVLQ+ATQDSLVILDELGRGTSTFD
Sbjct: 901  SCEISLVDTIFTRLGASDRIMTGESTFLVECTETASVLQNATQDSLVILDELGRGTSTFD 960

Query: 961  GYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPHVMLQHMACAFK----------D 1020
            GYAIAY+VFRHL+EKV CR+LFATHYHPLTKEFASHP V  +HMACAFK          D
Sbjct: 961  GYAIAYSVFRHLVEKVQCRMLFATHYHPLTKEFASHPRVTSKHMACAFKSRSDYQPRGCD 1020

Query: 1021 HELVFLYRLRSGACPESYGLQVATMAGIPGRVVEAASKASQMLKKTIKESFKSSEQRSQF 1080
             +LVFLYRL  GACPESYGLQVA MAGIP +VVE AS A+Q +K++I E+FKSSE RS+F
Sbjct: 1021 QDLVFLYRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMKRSIGENFKSSELRSEF 1080

Query: 1081 STLHEEWLKTLIAVSQFRGNDLD-ENDAFDTLFCLWYELKRSY 1093
            S+LHE+WLK+L+ +S+   N+     D +DTLFCLW+E+K SY
Sbjct: 1081 SSLHEDWLKSLVGISRVAHNNAPIGEDDYDTLFCLWHEIKSSY 1105

[Close]
BLAST of CmaCh05G013350 vs. ExPASy Swiss-Prot
Match: O04716 (DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana OX=3702 GN=MSH6 PE=1 SV=2)

HSP 1 Score: 426.4 bits (1095), Expect = 9.7e-118
Identity = 324/990 (32.73%), Postives = 489/990 (49.39%), Query Frame = 0 

Query: 209  IKLLQDSI-NSNMIHNEASDATSKFEWLNPSQIRDANGRRPDHPLYDKKTLFIPPDVLKK 268
            +K L+D++ + + +    +  + KF +L   + RDA  RRP    YD +TL++PPD +KK
Sbjct: 320  VKGLEDNVLDGDALARFGARDSEKFRFLGVDR-RDAKRRRPTDENYDPRTLYLPPDFVKK 379

Query: 269  MSASQKQYWNVKCQYMDILLFFKVGKFYELYEQDAEIGHKELDWKMTLSGVGKCRQVGVP 328
            ++  Q+Q+W  K ++MD ++FFK+GKFYEL+E DA +G KELD +        C   G P
Sbjct: 380  LTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQYMKGEQPHC---GFP 439

Query: 329  ESGIDDAVQKLVARGHKVGRIEQLESSDQTKTR-----GANSVIPRKLVQVVTPSTKVDG 388
            E      ++KLV +G++V  +EQ E+ DQ + R       + V+ R++  VVT  T  DG
Sbjct: 440  EKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSKDKVVKREVCAVVTKGTLTDG 499

Query: 389  DI---GPDAVHLLAIKEESCGLDNNSIA--YGFAFVDCAALKFWTGSIKDDASCAALGAL 448
            ++    PDA +L+A+ E    L N +    +G   VD A  K   G  KDD  C+AL  L
Sbjct: 500  EMLLTNPDASYLMALTEGGESLTNPTAEHNFGVCLVDVATQKIILGQFKDDQDCSALSCL 559

Query: 449  LMQVSPKEIIYEARGLTKETHKVLKKYSPTGSTALESTSGSPVTDFLEAS----EVKLLI 508
            L ++ P EII  A+ L+  T + + + +          +  P+++F ++     EV ++ 
Sbjct: 560  LSEMRPVEIIKPAKVLSYATERTIVRQTRNPLV----NNLVPLSEFWDSEKTIYEVGIIY 619

Query: 509  Q-----------SKGYFKGSLNSW-----NHTIESTDHDDIALCALGGLINHMSRLMLDD 568
            +           S+G   G  +S+     +       +  +AL ALGG I ++ +  LD+
Sbjct: 620  KRINCQPSSAYSSEGKILGDGSSFLPKMLSELATEDKNGSLALSALGGAIYYLRQAFLDE 679

Query: 569  VLREGA---VLPYQVYRGC-----LRMDGQTMVNLEIFRNNDDGGLSGTLYKYLDNCVTS 628
             L   A    LPY  +        + +D   + NLEIF N+ +GG SGTLY  L+ C+T+
Sbjct: 680  SLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENSRNGGYSGTLYAQLNQCITA 739

Query: 629  SGKRLLRLWICHPLKDVEEINNRLNVVEKLMAQSEVMTLLGTTYLRKLPDLERL----FG 688
            SGKRLL+ W+  PL + E I  R + V  L  ++   +L     L +LPD+ERL    F 
Sbjct: 740  SGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLEFRKSLSRLPDMERLIARMFS 799

Query: 689  QIKATVQSSASLVLPLIRKKLQKRRVKLFGSLVKGLRT---GLDLLIQVQKEGCIISLLK 748
             I+A+ ++   +VL    +   K++V+ F S ++G  T       L  + K      LL 
Sbjct: 800  SIEASGRNGDKVVL---YEDTAKKQVQEFISTLRGCETMAEACSSLRAILKHDTSRRLLH 859

Query: 749  VV----KLPQLTSN---------------------------------------------- 808
            ++     LP ++S+                                              
Sbjct: 860  LLTPGQSLPNISSSIKYFKDAFDWVEAHNSGRVIPHEGADEEYDCACKTVEEFESSLKKH 919

Query: 809  -----------------GGLDQFLTQFEAAVDSEFPNYQN-------------------- 868
                              G D++L +   ++    P+                       
Sbjct: 920  LKEQRKLLGDASINYVTVGKDEYLLEVPESLSGSVPHDYELCSSKKGVSRYWTPTIKKLL 979

Query: 869  HDVTDSDAERLSI-------LIELFVEKATEWCEVIHALNCIDVLRSFAVIGHSSRGSMS 928
             +++ + +E+ S        LI  F E   +W +++ A   +DVL S A    S  G   
Sbjct: 980  KELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATAELDVLISLAFASDSYEGVRC 1039

Query: 929  RPIILPQLSNSTTSPEKQGPVLQINGLWHPYALVENGESP-----VPNDM-ILGPDKDGY 988
            RP+I    S+         P L   GL HP   V  G+S      VPN++ I G +K  +
Sbjct: 1040 RPVISGSTSDGV-------PHLSATGLGHP---VLRGDSLGRGSFVPNNVKIGGAEKASF 1099

Query: 989  HPHTLLLTGPNMGGKSTLLRSTCLAVILAQLGCYVPCETCTLSVVDTIFTRLGATDRIMT 1048
                +LLTGPNMGGKSTLLR  CLAVILAQ+G  VP ET  +S VD I  R+GA D IM 
Sbjct: 1100 ----ILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDKICVRMGAKDHIMA 1159

[Close]
BLAST of CmaCh05G013350 vs. ExPASy Swiss-Prot
Match: O74502 (DNA mismatch repair protein msh6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=msh6 PE=1 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 3.7e-117
Identity = 310/943 (32.87%), Postives = 462/943 (48.99%), Query Frame = 0 

Query: 193  PLVGGSADLLQHSTKRIKLLQDSINSNMIHNEASDATSKFEWLNPSQIRDANGRRPDHPL 252
            P V GSA   + S K   L ++      +     +   ++EWL    +RDA+  R   P 
Sbjct: 302  PSVSGSASPTK-SNKNGVLNREEKRRQRMEAFKKENNERYEWL--LDVRDADQNRVGDPN 361

Query: 253  YDKKTLFIPPDVLKKMSASQKQYWNVKCQYMDILLFFKVGKFYELYEQDAEIGHKELDWK 312
            YD +TL+IPP         +KQ+W +K   MD ++FF+ GKFYELYE DA IGH+    K
Sbjct: 362  YDPRTLYIPPSAWATFKPFEKQFWKIKKDLMDTVVFFQKGKFYELYENDAAIGHQVFSLK 421

Query: 313  MTLSGVGKCRQVGVPESGIDDAVQKLVARGHKVGRIEQLESS------DQTKTRGANSVI 372
            +T       + VG+PE+  D    + +A+G+++ R++QLE++      D+ +T+    V+
Sbjct: 422  LT--DRVNMKMVGIPEASFDYWASQFIAKGYRIARVDQLETALGKEIKDRQRTQKEEKVV 481

Query: 373  PRKLVQVVTPSTKVDGDI--GPDAVHLLAIKEESCGLDNNSIAYGFAFVDCAALKFWTGS 432
             R L QV+T  T VD  +     + + +AIK ES   DN   ++G  F+D +   F    
Sbjct: 482  QRGLTQVLTSGTLVDEAMLTSDLSTYCMAIK-ESLQSDNEEPSFGICFIDTSTGGFHMCE 541

Query: 433  IKDDASCAALGALLMQVSPKEIIYEARGLTKETHKVLKKYSPTGSTALESTSGSPVTDFL 492
              DD     L  LL QV PKE+I E   +++++ + + KY  + S+        P T+F 
Sbjct: 542  FTDDIHRTKLDTLLTQVRPKELILEKSKISQKSIRAI-KYCVSSSSIWNFI--KPYTEFW 601

Query: 493  EASEVKLLIQSKGYFKGSLNSWNHTIES-TDHDDIALCALGGLINHMSRLMLD-DVLREG 552
            +   V+  I +  YFK  L      ++S      +A+ A G L  ++ +L LD D+   G
Sbjct: 602  DNERVEREIIAGDYFKNGLEGAPKILKSYLSEKPLAISAFGALFWYLRQLKLDKDMCSMG 661

Query: 553  AVLPYQVYR--GCLRMDGQTMVNLEIFRNNDDGGLSGTLYKYLDNCVTSSGKRLLRLWIC 612
                Y   +    L M+GQT+ NLEIF N+ DGG  GTL+  L  CVT  GKRL   W+C
Sbjct: 662  NFDEYDASQQSTSLLMNGQTLKNLEIFSNSFDGGSEGTLFHLLCRCVTPFGKRLFHTWLC 721

Query: 613  HPLKDVEEINNRLNVVEKLMAQSEVMTLLGTTYLRKLPDLERLFGQIKATVQSSASLVLP 672
            HPL+    IN RL+VVE L+A + V+      +L KLPDLERL  ++ A     A  V  
Sbjct: 722  HPLRSGTAINARLDVVE-LIADNPVIRDTIWGFLHKLPDLERLISRVHAGRSKPADFVRV 781

Query: 673  L------------IRKK-LQKRRVKLFGSLVK---------------------------- 732
            L            +R++ ++     L G +++                            
Sbjct: 782  LEGFQRINSAFDQLREEFMEVAEGTLLGEIIQSAPNMKEELEAWTRAFNWQKASEEGVFE 841

Query: 733  ---GLRTGLDLLIQVQKE--GCIISLLKVVKLPQLTSN---GGLDQFLTQFEAAVDSEFP 792
               G     D   + Q E    + +LL+  K     S+     + + + Q E   D + P
Sbjct: 842  PEIGFEAEYDTSQKYQSELKNELYALLEQYKKQLRCSSLNFKNIGKEVYQVEVPSDVKVP 901

Query: 793  -------------NYQNHDVTDS-----DAERLSILIE---------LFVEKATEWCEVI 852
                          Y N ++        +AE L + I           F     +W  +I
Sbjct: 902  VNWCKMSGTKKTNRYYNDELRKKIKKLLEAEELHLAIMSRMQEKFYIRFDSNYEQWLALI 961

Query: 853  HALNCIDVLRSFAVIGHSSRGSMSRPIILPQLSNSTTSPEKQGPVLQINGLWHPYALVEN 912
                 ID   S +     +  ++  P   P++       E++   L    L HP      
Sbjct: 962  KYTASIDCFFSLS----QAAAALGEPYCRPEII------EQKDGHLYFEELRHPCINASA 1021

Query: 913  GESPVPNDMILGPDKDGYHPHTLLLTGPNMGGKSTLLRSTCLAVILAQLGCYVPCETCTL 972
              + VPND++LG    G  P+ ++LTGPNM GKSTLLR  C+AVI+AQLGC+VP +  ++
Sbjct: 1022 ASTFVPNDVVLG----GESPNMIVLTGPNMAGKSTLLRQVCIAVIMAQLGCWVPAKRASI 1081

Query: 973  SVVDTIFTRLGATDRIMTGESTFLVECSETASVLQHATQDSLVILDELGRGTSTFDGYAI 1032
            + + +I+TRLGA D IM+  STF+VE SET  +L      SLVILDELGRGTST+DG+AI
Sbjct: 1082 TPMTSIYTRLGANDDIMSARSTFMVELSETKKILDECGPKSLVILDELGRGTSTYDGHAI 1141

Query: 1033 AYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPHVMLQHMACAF--KDHELVFLYRLRSG 1046
            AYAV  HL+  + C   F+THY  L  +F  H  V L  MA A   K   + FLY+L  G
Sbjct: 1142 AYAVLHHLVSNIGCLGFFSTHYQSLCVDFMHHRQVRLMQMAAAVDEKIRRVTFLYKLEDG 1201

[Close]
BLAST of CmaCh05G013350 vs. ExPASy Swiss-Prot
Match: Q55GU9 (DNA mismatch repair protein Msh6 OS=Dictyostelium discoideum OX=44689 GN=msh6 PE=3 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 3.1e-116
Identity = 295/917 (32.17%), Postives = 453/917 (49.40%), Query Frame = 0 

Query: 240  IRDANGRRPDHPLYDKKTLFIPPDVLKKMSASQKQYWNVKCQYMDILLFFKVGKFYELYE 299
            I+DANG   DHP YDK+TL IP   L K S  ++Q+W++K +  D ++FFK GKFYELYE
Sbjct: 332  IKDANGNPKDHPDYDKRTLHIPASCLSKFSPFERQFWDIKSKNYDTVVFFKKGKFYELYE 391

Query: 300  QDAEIGHKELDWKMTLSGVGKCRQVGVPESGIDDAVQKLVARGHKVGRIEQLESS----- 359
             DA+IGH++L  K+T       R VGVPE   +    KL+  GHKV +++Q+E+S     
Sbjct: 392  SDADIGHQQLHLKLT--DRVNMRMVGVPEMSFNHWASKLIHLGHKVAKVDQMETSIGMAK 451

Query: 360  DQTKTRGAN---SVIPRKLVQVVTPSTKVDGDIGPD--AVHLLAIKEESCGLDNNSIAYG 419
             Q +  G N   S+I R+L  ++T  T +D  +  D  + +L+AIKE     +     YG
Sbjct: 452  RQNEKGGRNKKDSIIQRELTSILTAGTLLDEQMITDQTSTYLMAIKE-----NEYDKQYG 511

Query: 420  FAFVDCAALKFWTGSIKDDASCAALGALLMQVSPKEIIYEARGLTKETHKVLKKYSPTGS 479
              FVD +  +F+  +I+DD +      LL+Q+ PKEI+YE    + +T  ++K+   T  
Sbjct: 512  VCFVDVSIGEFYLCTIQDDDNRMQFETLLLQMMPKEIVYEKGATSPKTISIMKRVLSTVK 571

Query: 480  TALESTSGSPVTDFLEASEVKLLIQSKGYFKGSLNSWNHTIESTDHDDIALCALGGLINH 539
              + +       D  +  E   + Q  G           T+    +++  + ALGG I++
Sbjct: 572  PVMNARLSLEYWDPTDTME--RITQLCG------GKTPETLCQMKNEEYLMGALGGCISY 631

Query: 540  MSRLMLDDVLREGAVL----PYQVYRGCLRMDGQTMVNLEIFRNNDDGGLSGTLYKYLDN 599
            +  + + + + E A      P  +    + +DGQ +VNLEIF N+ DG   GTL+K +D 
Sbjct: 632  LMDIKIGNSVVEQARFKRFNPLDIGNSMI-LDGQCLVNLEIFNNSTDGSTEGTLFKLMDR 691

Query: 600  CVTSSGKRLLRLWICHPLKDVEEINNRLNVVEKLMAQSEVMTLLGTTYLRKLPDLERLFG 659
            C T+ GKR+ R WIC PL +   I +R   +E L    E +  + T  L KLPDLER+  
Sbjct: 692  CTTAFGKRMFRQWICRPLANKNAIVDRQKAIEFLRDSPETLQKV-TAILNKLPDLERMIA 751

Query: 660  QIKATVQSSASLV-------------LPLIRKKLQKRRVKLFGSLVKGLRTGLDLL---- 719
            +I+A     + L+             L L+ +  Q   + L   L    +   D +    
Sbjct: 752  RIRAQTSKISDLISVLNHFDNIHSKLLELLDEAEQIESIHLRSCLFMDNQQDNDDIDEQE 811

Query: 720  --------------------------IQVQKEGCIISLLKVVKLPQLTSN---------- 779
                                        ++++  + S    ++  Q   N          
Sbjct: 812  NSNNNNNIRYSGYPNLKPYIERVRKSFTIEQDRVVPSKGLFLEFDQCLGNIQSLEQSFAK 871

Query: 780  ------------------GGLDQFLTQFEAAVDSEFP-------------NYQNHDVTDS 839
                               G + +  +   A   + P              Y +  VT +
Sbjct: 872  HLEEQKAHFKCNKIEYKHMGKEIYQIEIPVAFTKKLPAGFSLKSSSSKVNRYHSPFVTKN 931

Query: 840  --------------DAERLSILIELFVEKATEWCEVIHALNCIDVLRSFAVIGHSSRGSM 899
                            E L  ++  F      +   I  L+ +D L S   +   S   M
Sbjct: 932  LTSLLEERDTYEVLSKEVLKKILSNFAIYFNHFQIAITKLSQLDCLLSLYKVSFQSSIQM 991

Query: 900  SRPIILPQLSNSTTSPEKQGPVLQINGLWHPYALVENGESPVPNDMILGPDKDGYHPHTL 959
             RP+ +        S +++G  + +  + HP    ++G+  +PND+ L  + +   P  +
Sbjct: 992  CRPLFV--------SSDQRG-FIDVKDMRHPCIYSKSGDDFIPNDISLNTENN--PPSLM 1051

Query: 960  LLTGPNMGGKSTLLRSTCLAVILAQLGCYVPCETCTLSVVDTIFTRLGATDRIMTGESTF 1019
            +LTGPNMGGKSTLLR +C+ VI+AQ+GCYV   +C +S+VD IFTRLGA D I+ G+STF
Sbjct: 1052 VLTGPNMGGKSTLLRQSCILVIMAQMGCYVSASSCEMSIVDRIFTRLGANDNILAGQSTF 1111

Query: 1020 LVECSETASVLQHATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYH 1042
            +VE +ET++VL++AT+ SLVILDELGRGTSTFDGY+IAY+V  +L  KV    +FATHY 
Sbjct: 1112 MVELAETSAVLKYATKRSLVILDELGRGTSTFDGYSIAYSVLNYLATKVQSMCIFATHYQ 1171

[Close]
BLAST of CmaCh05G013350 vs. ExPASy Swiss-Prot
Match: E1BYJ2 (DNA mismatch repair protein Msh6 OS=Gallus gallus OX=9031 GN=MSH6 PE=3 SV=2)

HSP 1 Score: 414.5 bits (1064), Expect = 3.8e-114
Identity = 301/978 (30.78%), Postives = 465/978 (47.55%), Query Frame = 0 

Query: 231  KFEWLNPSQIRDANGRRPDHPLYDKKTLFIPPDVLKKMSASQKQYWNVKCQYMDILLFFK 290
            K EWL   + +DA+ RR +HP YD  TL++P D L K +   +++W +K Q  D ++ +K
Sbjct: 348  KLEWLQEGKKKDAHRRRQNHPDYDPCTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVICYK 407

Query: 291  VGKFYELYEQDAEIGHKELDWKMTLSGVGKCRQVGVPESGIDDAVQKLVARGHKVGRIEQ 350
            VGKFYELY  DA  G  EL     +   G     G PE+        LV +G+K+ R+EQ
Sbjct: 408  VGKFYELYHMDAVTGVNELG---LIFMKGSWAHSGFPETAFGRFSAILVQKGYKIARVEQ 467

Query: 351  LESSDQTKTR--------GANSVIPRKLVQVVTPSTKVDGDIGPDAV-----HLLAIKEE 410
             E+ +  + R          + V+ R++ +++T  T+    I  D       +LL +KE+
Sbjct: 468  TETPEMMEARCKATAHTTKFDKVVRREICRIITKGTQTYSIIDCDPTENHNKYLLCVKEK 527

Query: 411  SCGLDNNSIAYGFAFVDCAALKFWTGSIKDDASCAALGALLMQVSPKEIIYEARGLTKET 470
                 +    YG  FVD +  KF+ G   DD  C+    L+   +P ++++E   LT +T
Sbjct: 528  ED--SSGQRVYGVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLFEKGNLTVDT 587

Query: 471  HKVLKKYSPTGSTALESTSGSPVTDFLEASEVKLLIQSKGYFK---------------GS 530
             K+LK  S          SGS    F  AS+   ++  + YFK                S
Sbjct: 588  QKILKG-SLISCIQEGLISGS---QFWSASKTLKVLLEEEYFKENQNTESGCVLPSVIKS 647

Query: 531  LNSWNHTIEST--DHDDIALCALGGLINHMSRLMLDDVLREGA----VLPYQVYRG---- 590
            L S + ++  T  ++ ++AL ALGG++ ++ + ++D  L   A     +P          
Sbjct: 648  LTSESDSLGLTPGENSELALSALGGIVFYLKKCLIDQELLSLANFEKYIPVDADNAKTVS 707

Query: 591  ----------CLRMDGQTMVNLEIFRNNDDGGLSGTLYKYLDNCVTSSGKRLLRLWICHP 650
                       + +DG T++NLE+ +N  +G   GTL + +D+C T  GKRLL+ W+C P
Sbjct: 708  SSNFFARTDRRMVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLCAP 767

Query: 651  LKDVEEINNRLNVVEKLMAQSEVMTLLGTTYLRKLPDLERLFGQIKATVQSSASLVLPLI 710
            L +   IN+RL+ VE L+A    +T + T +L+KLPDLERL  +I +      S   P  
Sbjct: 768  LCNPTSINDRLDAVEDLLAVPAKLTEI-TEHLKKLPDLERLLSKIHSIGSPLKSQNHPDS 827

Query: 711  RK------KLQKRRVKLFGSLVKGL----------------------------------- 770
            R       K  K+++  F S ++G                                    
Sbjct: 828  RAIFYEEIKYSKKKIADFLSALEGFKVMNEIVDAMEEVASDFKSQVLKQLVTRKAKHPDG 887

Query: 771  ----------------------RTGL-----------------------DLLIQVQKEGC 830
                                  +TG+                       D    + K+  
Sbjct: 888  RFPDLSAELKRWDTAFDHNQARKTGVITPKAGFDPDYDKALQDIKTVEEDFRTYLDKQRK 947

Query: 831  IISLLKV-----------VKLPQLTSNGGLDQFLTQFE-AAVDSEFPNYQNHDVTDSDAE 890
            ++ L  V           +++P+  ++  L +   ++E  +    +  Y   ++    AE
Sbjct: 948  LLGLKSVLYWGTGKNRYQMEIPETATSRNLPE---EYELKSTRKGYKRYWTKEIEKMLAE 1007

Query: 891  RLSI--------------LIELFVEKATEWCEVIHALNCIDVLRSFAVIGHSSRGSMSRP 950
             ++               L   F + + +W   +  +  +DVL S A       G + RP
Sbjct: 1008 LINAEERRDAALKDCMRRLFYNFDKNSQDWQTAVQCIAVLDVLMSLANYSQDGDGPLCRP 1067

Query: 951  IILPQLSNSTTSPEKQGPVLQINGLWHP-YALVENGESPVPNDMILG-PDKD-GYHPHTL 1010
            +IL  + ++        P L++    HP       G+  +PND+++G  D+D G     +
Sbjct: 1068 VILLPVDSAP-------PFLELKNARHPCITKTFFGDDFIPNDIVIGSKDEDGGSEASCV 1127

Query: 1011 LLTGPNMGGKSTLLRSTCLAVILAQLGCYVPCETCTLSVVDTIFTRLGATDRIMTGESTF 1038
            L+TGPNMGGKSTL+R   L VI+AQLGCYVP E C L+ +D +FTRLGA+DRIM+GESTF
Sbjct: 1128 LVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTF 1187

[Close]
BLAST of CmaCh05G013350 vs. TAIR 10
Match: AT3G24495.1 (MUTS homolog 7 )

HSP 1 Score: 1286.2 bits (3327), Expect = 0.0e+00
Identity = 683/1123 (60.82%), Postives = 837/1123 (74.53%), Query Frame = 0 

Query: 1    MQRQKSLLSFFQKSPSENR----SSDGDTSSVAQRLTRFPAKPNVAGLEQP---AIQNNA 60
            MQRQ+S+LSFFQK  +       S D  +        RF  K   A  +     A+  + 
Sbjct: 1    MQRQRSILSFFQKPTAATTKGLVSGDAASGGGGSGGPRFNVKEGDAKGDASVRFAVSKSV 60

Query: 61   DPSLEIRGTDTPPEKVPCQIL-----PVIEKNRGSSLFSSIMHKFVRVDDKHKANERDEI 120
            D   E+RGTDTPPEKVP ++L     P       SSLFS+IMHKFV+VDD+  + ER   
Sbjct: 61   D---EVRGTDTPPEKVPRRVLPSGFKPAESAGDASSLFSNIMHKFVKVDDRDCSGER--- 120

Query: 121  KKDSSQNEVWKDSSQLPSISGKVNDPIEHTELKGASRHHSKLHAANLNGHR--GPALDIE 180
               S ++ V  + S   S+  K ND I         +   + HA + +G        DI 
Sbjct: 121  ---SREDVVPLNDS---SLCMKANDVIPQFR-SNNGKTQERNHAFSFSGRAELRSVEDIG 180

Query: 181  SDDGIGGPETPGMRPSASRLKR--SQEIPLVGGSADLLQHSTKRIKLLQDSINSNMIHNE 240
             D  + GPETPGMRP ASRLKR    E+        +L  S KR+K+LQD +       E
Sbjct: 181  VDGDVPGPETPGMRPRASRLKRVLEDEMTFKEDKVPVLD-SNKRLKMLQDPVCGE--KKE 240

Query: 241  ASDATSKFEWLNPSQIRDANGRRPDHPLYDKKTLFIPPDVLKKMSASQKQYWNVKCQYMD 300
             ++ T KFEWL  S+IRDAN RRPD PLYD+KTL IPPDV KKMSASQKQYW+VK +YMD
Sbjct: 241  VNEGT-KFEWLESSRIRDANRRRPDDPLYDRKTLHIPPDVFKKMSASQKQYWSVKSEYMD 300

Query: 301  ILLFFKVGKFYELYEQDAEIGHKELDWKMTLSGVGKCRQVGVPESGIDDAVQKLVARGHK 360
            I+LFFKVGKFYELYE DAE+GHKELDWKMT+SGVGKCRQVG+ ESGID+AVQKL+ARG+K
Sbjct: 301  IVLFFKVGKFYELYELDAELGHKELDWKMTMSGVGKCRQVGISESGIDEAVQKLLARGYK 360

Query: 361  VGRIEQLESSDQTKTRGANSVIPRKLVQVVTPSTKVDGDIGPDAVHLLAIKEESCGLDNN 420
            VGRIEQLE+SDQ K RGAN++IPRKLVQV+TPST  +G+IGPDAVHLLAIKE    L   
Sbjct: 361  VGRIEQLETSDQAKARGANTIIPRKLVQVLTPSTASEGNIGPDAVHLLAIKEIKMELQKC 420

Query: 421  SIAYGFAFVDCAALKFWTGSIKDDASCAALGALLMQVSPKEIIYEARGLTKETHKVLKKY 480
            S  YGFAFVDCAAL+FW GSI DDASCAALGALLMQVSPKE++Y+++GL++E  K L+KY
Sbjct: 421  STVYGFAFVDCAALRFWVGSISDDASCAALGALLMQVSPKEVLYDSKGLSREAQKALRKY 480

Query: 481  SPTGSTALESTSGSPVTDFLEASEVKLLIQSKGYFKGSLNSWNHTIESTDHDDIALCALG 540
            + TGSTA++      V    +A+ V+ +I+S GYFKGS  SWN  ++  +  D+AL ALG
Sbjct: 481  TLTGSTAVQLAPVPQVMGDTDAAGVRNIIESNGYFKGSSESWNCAVDGLNECDVALSALG 540

Query: 541  GLINHMSRLMLDDVLREGAVLPYQVYRGCLRMDGQTMVNLEIFRNNDDGGLSGTLYKYLD 600
             LINH+SRL L+DVL+ G + PYQVYRGCLR+DGQTMVNLEIF N+ DGG SGTLYKYLD
Sbjct: 541  ELINHLSRLKLEDVLKHGDIFPYQVYRGCLRIDGQTMVNLEIFNNSCDGGPSGTLYKYLD 600

Query: 601  NCVTSSGKRLLRLWICHPLKDVEEINNRLNVVEKLMAQSEVMTLLGTTYLRKLPDLERLF 660
            NCV+ +GKRLLR WICHPLKDVE IN RL+VVE+  A SE M + G  YL KLPDLERL 
Sbjct: 601  NCVSPTGKRLLRNWICHPLKDVESINKRLDVVEEFTANSESMQITG-QYLHKLPDLERLL 660

Query: 661  GQIKATVQSSASLVLPLIRKKLQKRRVKLFGSLVKGLRTGLDLLIQVQKEGCIISLL-KV 720
            G+IK++V+SSAS++  L+ KK+ K+RVK FG +VKG R+G+DLL+ +QKE  ++SLL K+
Sbjct: 661  GRIKSSVRSSASVLPALLGKKVLKQRVKAFGQIVKGFRSGIDLLLALQKESNMMSLLYKL 720

Query: 721  VKLPQLTSNGGLDQFLTQFEAAVDSEFPNYQNHDVTDSDAERLSILIELFVEKATEWCEV 780
             KLP L    GL+ FL+QFEAA+DS+FPNYQN DVTD +AE L+ILIELF+E+AT+W EV
Sbjct: 721  CKLPILVGKSGLELFLSQFEAAIDSDFPNYQNQDVTDENAETLTILIELFIERATQWSEV 780

Query: 781  IHALNCIDVLRSFAVIGHSSRGSMSRPIILPQLSNSTTSPEKQGPVLQINGLWHPYALVE 840
            IH ++C+DVLRSFA+    S GSM+RP+I P+   +  + + +GP+L+I GLWHP+A+  
Sbjct: 781  IHTISCLDVLRSFAIAASLSAGSMARPVIFPESEATDQNQKTKGPILKIQGLWHPFAVAA 840

Query: 841  NGESPVPNDMILGP---DKDGYHPHTLLLTGPNMGGKSTLLRSTCLAVILAQLGCYVPCE 900
            +G+ PVPND++LG         HP +LLLTGPNMGGKSTLLR+TCLAVI AQLGCYVPCE
Sbjct: 841  DGQLPVPNDILLGEARRSSGSIHPRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCE 900

Query: 901  TCTLSVVDTIFTRLGATDRIMTGESTFLVECSETASVLQHATQDSLVILDELGRGTSTFD 960
            +C +S+VDTIFTRLGA+DRIMTGESTFLVEC+ETASVLQ+ATQDSLVILDELGRGTSTFD
Sbjct: 901  SCEISLVDTIFTRLGASDRIMTGESTFLVECTETASVLQNATQDSLVILDELGRGTSTFD 960

Query: 961  GYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPHVMLQHMACAFK----------D 1020
            GYAIAY+VFRHL+EKV CR+LFATHYHPLTKEFASHP V  +HMACAFK          D
Sbjct: 961  GYAIAYSVFRHLVEKVQCRMLFATHYHPLTKEFASHPRVTSKHMACAFKSRSDYQPRGCD 1020

Query: 1021 HELVFLYRLRSGACPESYGLQVATMAGIPGRVVEAASKASQMLKKTIKESFKSSEQRSQF 1080
             +LVFLYRL  GACPESYGLQVA MAGIP +VVE AS A+Q +K++I E+FKSSE RS+F
Sbjct: 1021 QDLVFLYRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMKRSIGENFKSSELRSEF 1080

Query: 1081 STLHEEWLKTLIAVSQFRGNDLD-ENDAFDTLFCLWYELKRSY 1093
            S+LHE+WLK+L+ +S+   N+     D +DTLFCLW+E+K SY
Sbjct: 1081 SSLHEDWLKSLVGISRVAHNNAPIGEDDYDTLFCLWHEIKSSY 1105

[Close]
BLAST of CmaCh05G013350 vs. TAIR 10
Match: AT4G02070.1 (MUTS homolog 6 )

HSP 1 Score: 426.4 bits (1095), Expect = 6.9e-119
Identity = 324/990 (32.73%), Postives = 489/990 (49.39%), Query Frame = 0 

Query: 209  IKLLQDSI-NSNMIHNEASDATSKFEWLNPSQIRDANGRRPDHPLYDKKTLFIPPDVLKK 268
            +K L+D++ + + +    +  + KF +L   + RDA  RRP    YD +TL++PPD +KK
Sbjct: 320  VKGLEDNVLDGDALARFGARDSEKFRFLGVDR-RDAKRRRPTDENYDPRTLYLPPDFVKK 379

Query: 269  MSASQKQYWNVKCQYMDILLFFKVGKFYELYEQDAEIGHKELDWKMTLSGVGKCRQVGVP 328
            ++  Q+Q+W  K ++MD ++FFK+GKFYEL+E DA +G KELD +        C   G P
Sbjct: 380  LTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQYMKGEQPHC---GFP 439

Query: 329  ESGIDDAVQKLVARGHKVGRIEQLESSDQTKTR-----GANSVIPRKLVQVVTPSTKVDG 388
            E      ++KLV +G++V  +EQ E+ DQ + R       + V+ R++  VVT  T  DG
Sbjct: 440  EKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSKDKVVKREVCAVVTKGTLTDG 499

Query: 389  DI---GPDAVHLLAIKEESCGLDNNSIA--YGFAFVDCAALKFWTGSIKDDASCAALGAL 448
            ++    PDA +L+A+ E    L N +    +G   VD A  K   G  KDD  C+AL  L
Sbjct: 500  EMLLTNPDASYLMALTEGGESLTNPTAEHNFGVCLVDVATQKIILGQFKDDQDCSALSCL 559

Query: 449  LMQVSPKEIIYEARGLTKETHKVLKKYSPTGSTALESTSGSPVTDFLEAS----EVKLLI 508
            L ++ P EII  A+ L+  T + + + +          +  P+++F ++     EV ++ 
Sbjct: 560  LSEMRPVEIIKPAKVLSYATERTIVRQTRNPLV----NNLVPLSEFWDSEKTIYEVGIIY 619

Query: 509  Q-----------SKGYFKGSLNSW-----NHTIESTDHDDIALCALGGLINHMSRLMLDD 568
            +           S+G   G  +S+     +       +  +AL ALGG I ++ +  LD+
Sbjct: 620  KRINCQPSSAYSSEGKILGDGSSFLPKMLSELATEDKNGSLALSALGGAIYYLRQAFLDE 679

Query: 569  VLREGA---VLPYQVYRGC-----LRMDGQTMVNLEIFRNNDDGGLSGTLYKYLDNCVTS 628
             L   A    LPY  +        + +D   + NLEIF N+ +GG SGTLY  L+ C+T+
Sbjct: 680  SLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENSRNGGYSGTLYAQLNQCITA 739

Query: 629  SGKRLLRLWICHPLKDVEEINNRLNVVEKLMAQSEVMTLLGTTYLRKLPDLERL----FG 688
            SGKRLL+ W+  PL + E I  R + V  L  ++   +L     L +LPD+ERL    F 
Sbjct: 740  SGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLEFRKSLSRLPDMERLIARMFS 799

Query: 689  QIKATVQSSASLVLPLIRKKLQKRRVKLFGSLVKGLRT---GLDLLIQVQKEGCIISLLK 748
             I+A+ ++   +VL    +   K++V+ F S ++G  T       L  + K      LL 
Sbjct: 800  SIEASGRNGDKVVL---YEDTAKKQVQEFISTLRGCETMAEACSSLRAILKHDTSRRLLH 859

Query: 749  VV----KLPQLTSN---------------------------------------------- 808
            ++     LP ++S+                                              
Sbjct: 860  LLTPGQSLPNISSSIKYFKDAFDWVEAHNSGRVIPHEGADEEYDCACKTVEEFESSLKKH 919

Query: 809  -----------------GGLDQFLTQFEAAVDSEFPNYQN-------------------- 868
                              G D++L +   ++    P+                       
Sbjct: 920  LKEQRKLLGDASINYVTVGKDEYLLEVPESLSGSVPHDYELCSSKKGVSRYWTPTIKKLL 979

Query: 869  HDVTDSDAERLSI-------LIELFVEKATEWCEVIHALNCIDVLRSFAVIGHSSRGSMS 928
             +++ + +E+ S        LI  F E   +W +++ A   +DVL S A    S  G   
Sbjct: 980  KELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATAELDVLISLAFASDSYEGVRC 1039

Query: 929  RPIILPQLSNSTTSPEKQGPVLQINGLWHPYALVENGESP-----VPNDM-ILGPDKDGY 988
            RP+I    S+         P L   GL HP   V  G+S      VPN++ I G +K  +
Sbjct: 1040 RPVISGSTSDGV-------PHLSATGLGHP---VLRGDSLGRGSFVPNNVKIGGAEKASF 1099

Query: 989  HPHTLLLTGPNMGGKSTLLRSTCLAVILAQLGCYVPCETCTLSVVDTIFTRLGATDRIMT 1048
                +LLTGPNMGGKSTLLR  CLAVILAQ+G  VP ET  +S VD I  R+GA D IM 
Sbjct: 1100 ----ILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDKICVRMGAKDHIMA 1159

[Close]
BLAST of CmaCh05G013350 vs. TAIR 10
Match: AT4G02070.2 (MUTS homolog 6 )

HSP 1 Score: 422.9 bits (1086), Expect = 7.7e-118
Identity = 323/990 (32.63%), Postives = 487/990 (49.19%), Query Frame = 0 

Query: 209  IKLLQDSI-NSNMIHNEASDATSKFEWLNPSQIRDANGRRPDHPLYDKKTLFIPPDVLKK 268
            +K L+D++ + + +    +  + KF +L      DA  RRP    YD +TL++PPD +KK
Sbjct: 320  VKGLEDNVLDGDALARFGARDSEKFRFLGV----DAKRRRPTDENYDPRTLYLPPDFVKK 379

Query: 269  MSASQKQYWNVKCQYMDILLFFKVGKFYELYEQDAEIGHKELDWKMTLSGVGKCRQVGVP 328
            ++  Q+Q+W  K ++MD ++FFK+GKFYEL+E DA +G KELD +        C   G P
Sbjct: 380  LTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQYMKGEQPHC---GFP 439

Query: 329  ESGIDDAVQKLVARGHKVGRIEQLESSDQTKTR-----GANSVIPRKLVQVVTPSTKVDG 388
            E      ++KLV +G++V  +EQ E+ DQ + R       + V+ R++  VVT  T  DG
Sbjct: 440  EKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSKDKVVKREVCAVVTKGTLTDG 499

Query: 389  DI---GPDAVHLLAIKEESCGLDNNSIA--YGFAFVDCAALKFWTGSIKDDASCAALGAL 448
            ++    PDA +L+A+ E    L N +    +G   VD A  K   G  KDD  C+AL  L
Sbjct: 500  EMLLTNPDASYLMALTEGGESLTNPTAEHNFGVCLVDVATQKIILGQFKDDQDCSALSCL 559

Query: 449  LMQVSPKEIIYEARGLTKETHKVLKKYSPTGSTALESTSGSPVTDFLEAS----EVKLLI 508
            L ++ P EII  A+ L+  T + + + +          +  P+++F ++     EV ++ 
Sbjct: 560  LSEMRPVEIIKPAKVLSYATERTIVRQTRNPLV----NNLVPLSEFWDSEKTIYEVGIIY 619

Query: 509  Q-----------SKGYFKGSLNSW-----NHTIESTDHDDIALCALGGLINHMSRLMLDD 568
            +           S+G   G  +S+     +       +  +AL ALGG I ++ +  LD+
Sbjct: 620  KRINCQPSSAYSSEGKILGDGSSFLPKMLSELATEDKNGSLALSALGGAIYYLRQAFLDE 679

Query: 569  VLREGA---VLPYQVYRGC-----LRMDGQTMVNLEIFRNNDDGGLSGTLYKYLDNCVTS 628
             L   A    LPY  +        + +D   + NLEIF N+ +GG SGTLY  L+ C+T+
Sbjct: 680  SLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENSRNGGYSGTLYAQLNQCITA 739

Query: 629  SGKRLLRLWICHPLKDVEEINNRLNVVEKLMAQSEVMTLLGTTYLRKLPDLERL----FG 688
            SGKRLL+ W+  PL + E I  R + V  L  ++   +L     L +LPD+ERL    F 
Sbjct: 740  SGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLEFRKSLSRLPDMERLIARMFS 799

Query: 689  QIKATVQSSASLVLPLIRKKLQKRRVKLFGSLVKGLRT---GLDLLIQVQKEGCIISLLK 748
             I+A+ ++   +VL    +   K++V+ F S ++G  T       L  + K      LL 
Sbjct: 800  SIEASGRNGDKVVL---YEDTAKKQVQEFISTLRGCETMAEACSSLRAILKHDTSRRLLH 859

Query: 749  VV----KLPQLTSN---------------------------------------------- 808
            ++     LP ++S+                                              
Sbjct: 860  LLTPGQSLPNISSSIKYFKDAFDWVEAHNSGRVIPHEGADEEYDCACKTVEEFESSLKKH 919

Query: 809  -----------------GGLDQFLTQFEAAVDSEFPNYQN-------------------- 868
                              G D++L +   ++    P+                       
Sbjct: 920  LKEQRKLLGDASINYVTVGKDEYLLEVPESLSGSVPHDYELCSSKKGVSRYWTPTIKKLL 979

Query: 869  HDVTDSDAERLSI-------LIELFVEKATEWCEVIHALNCIDVLRSFAVIGHSSRGSMS 928
             +++ + +E+ S        LI  F E   +W +++ A   +DVL S A    S  G   
Sbjct: 980  KELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATAELDVLISLAFASDSYEGVRC 1039

Query: 929  RPIILPQLSNSTTSPEKQGPVLQINGLWHPYALVENGESP-----VPNDM-ILGPDKDGY 988
            RP+I    S+         P L   GL HP   V  G+S      VPN++ I G +K  +
Sbjct: 1040 RPVISGSTSDGV-------PHLSATGLGHP---VLRGDSLGRGSFVPNNVKIGGAEKASF 1099

Query: 989  HPHTLLLTGPNMGGKSTLLRSTCLAVILAQLGCYVPCETCTLSVVDTIFTRLGATDRIMT 1048
                +LLTGPNMGGKSTLLR  CLAVILAQ+G  VP ET  +S VD I  R+GA D IM 
Sbjct: 1100 ----ILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDKICVRMGAKDHIMA 1159

[Close]
BLAST of CmaCh05G013350 vs. TAIR 10
Match: AT4G25540.1 (homolog of DNA mismatch repair protein MSH3 )

HSP 1 Score: 221.5 bits (563), Expect = 3.4e-57
Identity = 238/928 (25.65%), Postives = 407/928 (43.86%), Query Frame = 0 

Query: 266  KKMSASQKQYWNVKCQYMDILLFFKVGKFYELYEQDAEIGHKELDWKMTLSGVGKCRQVG 325
            +K +  ++Q   +K +Y D++L  +VG  Y  + +DAEI  + L     +          
Sbjct: 102  RKYTPLEQQVVELKSKYPDVVLMVEVGYRYRFFGEDAEIAARVLGIYAHMD--HNFMTAS 161

Query: 326  VPESGIDDAVQKLVARGHKVGRIEQLESSDQTKTRGANSVIP--RKLVQVVTPST----- 385
            VP   ++  V++LV  G+K+G ++Q E++   K+ GAN   P  R L  + T +T     
Sbjct: 162  VPTFRLNFHVRRLVNAGYKIGVVKQTETA-AIKSHGANRTGPFFRGLSALYTKATLEAAE 221

Query: 386  KVDG------DIGPDAVHLLAIKEE-------SCGLDNN-SIAYGFAFVDCAALKFWTGS 445
             + G        G  +  L+ + +E        CG++ +  +  G   V+ +  +     
Sbjct: 222  DISGGCGGEEGFGSQSNFLVCVVDERVKSETLGCGIEMSFDVRVGVVGVEISTGEVVYEE 281

Query: 446  IKDDASCAALGALLMQVSPKEIIYEARGLTKETHKVLKKYS-PTGSTALESTS------G 505
              D+   + L A+++ +SP E++   + L+++T K L  ++ PT +  +E  S      G
Sbjct: 282  FNDNFMRSGLEAVILSLSPAELLL-GQPLSQQTEKFLVAHAGPTSNVRVERASLDCFSNG 341

Query: 506  SPVTDFL------------EASEVKLLIQSKGYFKGSLNSWNHTIESTDHDDIALCALGG 565
            + V + +            +  E+KL    KG    ++    HTI +  H  + + AL  
Sbjct: 342  NAVDEVISLCEKISAGNLEDDKEMKLEAAEKGMSCLTV----HTIMNMPH--LTVQALAL 401

Query: 566  LINHMSRLMLDDVLREGAVLPYQVYRGCLRMDGQTMVNLEIFRNNDDGGLSGTLYKYLDN 625
               H+ +   + +L +GA          + +   T+  LE+ +NN DG  SG+L+  +++
Sbjct: 402  TFCHLKQFGFERILYQGASFRSLSSNTEMTLSANTLQQLEVVKNNSDGSESGSLFHNMNH 461

Query: 626  CVTSSGKRLLRLWICHPLKDVEEINNRLNVV------------------------EKLMA 685
             +T  G RLLR W+ HPL D   I+ RL+ V                        E+ + 
Sbjct: 462  TLTVYGSRLLRHWVTHPLCDRNLISARLDAVSEISACMGSHSSSQLSSELVEEGSERAIV 521

Query: 686  QSEVMTLLGT--TYLRKLPDLERLFGQI-----KATVQSSASLVLPLIRKKLQKRRVK-- 745
              E   +L +  T + +  D++R   +I     KAT   +    + L  K++Q+  +K  
Sbjct: 522  SPEFYLVLSSVLTAMSRSSDIQRGITRIFHRTAKATEFIAVMEAILLAGKQIQRLGIKQD 581

Query: 746  ----------LFGSLVKGLRTGLDLLIQVQKEGCIIS-----------LLKVV-----KL 805
                      +  +L++ L + +   + V   G ++S           LL ++     + 
Sbjct: 582  SEMRSMQSATVRSTLLRKLISVISSPVVVDNAGKLLSALNKEAAVRGDLLDILITSSDQF 641

Query: 806  PQLTS--------NGGLDQFLTQF---------------------EAAVDSEFP------ 865
            P+L             LD  +  F                     E  VDS+ P      
Sbjct: 642  PELAEARQAVLVIREKLDSSIASFRKKLAIRNLEFLQVSGITHLIELPVDSKVPMNWVKV 701

Query: 866  NYQNHDVTDSDAERLSILIELFVEKATEWCEVIHALNCIDVLRSFAVIGHSSRGSMSRPI 925
            N     +     E ++ L EL +  ATE   +++  +    L+SF+      + ++    
Sbjct: 702  NSTKKTIRYHPPEIVAGLDELAL--ATEHLAIVNRASWDSFLKSFSRYYTDFKAAVQALA 761

Query: 926  ILPQL-SNSTTSPEKQ----------GPV-LQINGLWHPYALVENGESPVPNDMILGPDK 985
             L  L S ST S  K            PV + I    HP       ++ VPND IL  + 
Sbjct: 762  ALDCLHSLSTLSRNKNYVRPEFVDDCEPVEINIQSGRHPVLETILQDNFVPNDTILHAEG 821

Query: 986  DGYHPHTLLLTGPNMGGKSTLLRSTCLAVILAQLGCYVPCETCTLSVVDTIFTRLGATDR 1039
            +    +  ++TGPNMGGKS  +R   L  I+AQ+G +VP     L V+D +FTR+GA+D 
Sbjct: 822  E----YCQIITGPNMGGKSCYIRQVALISIMAQVGSFVPASFAKLHVLDGVFTRMGASDS 881

[Close]
BLAST of CmaCh05G013350 vs. TAIR 10
Match: AT3G18524.1 (MUTS homolog 2 )

HSP 1 Score: 196.4 bits (498), Expect = 1.2e-49
Identity = 191/725 (26.34%), Postives = 312/725 (43.03%), Query Frame = 0 

Query: 409  GFAFVDCAALKFWTGSIKDDASCAALGALLMQVSPKEIIYEAR-GLTKETHKVLKKYSPT 468
            G A+VD            DD+    L + L+ +  KE I+ A  G + E   +       
Sbjct: 159  GMAYVDLTRRVLGLAEFLDDSRFTNLESSLIALGAKECIFPAESGKSNECKSLYDSLERC 218

Query: 469  GSTALESTSGSPVTDFLEASEVKLLIQSKGYFKGSLNSWNHTIESTDHDDIALCALGGLI 528
                 E          L+ S++K L+      KG++      +      D+A  ALG L+
Sbjct: 219  AVMITERKKHEFKGRDLD-SDLKRLV------KGNIEPVRDLVSGF---DLATPALGALL 278

Query: 529  NHMSRLMLDDVLREGAVLPYQVYRGCLRMDGQTMVNLEIFRNNDDGGLSGTLYKYLD-NC 588
            +    L  +D      +  Y +  G +R+D   M  L +  +  D   + +L+  ++  C
Sbjct: 279  SFSELLSNEDNYGNFTIRRYDI-GGFMRLDSAAMRALNVMESKTDANKNFSLFGLMNRTC 338

Query: 589  VTSSGKRLLRLWICHPLKDVEEINNRLNVVEKLMAQSEVMTLLGTTYLRKLPDLERLFGQ 648
                GKRLL +W+  PL D+ EI  RL++V+  + ++ +   L   +L+++ D+ERL   
Sbjct: 339  TAGMGKRLLHMWLKQPLVDLNEIKTRLDIVQCFVEEAGLRQDL-RQHLKRISDVERLLRS 398

Query: 649  -----------------------IKATVQSSASLVLPLIRKKLQKRRVKL-----FGSLV 708
                                   IK  +Q        LI ++  K+   L      G  +
Sbjct: 399  LERRRGGLQHIIKLYQSTIRLPFIKTAMQQYTGEFASLISERYLKKLEALSDQDHLGKFI 458

Query: 709  KGLRTGLDL-------------------------------LIQVQKEGCI---ISLLKVV 768
              +   +DL                               + ++ K+  I   + + K +
Sbjct: 459  DLVECSVDLDQLENGEYMISSSYDTKLASLKDQKELLEQQIHELHKKTAIELDLQVDKAL 518

Query: 769  KLPQLTSNGGL------------DQFLTQF---EAAVDS-EFPNY-------QNHDVTDS 828
            KL +    G +             +  TQF   E   D  +F N        Q   V D 
Sbjct: 519  KLDKAAQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQSVVDD 578

Query: 829  DAERLSILIELFVEKATEWCEVIH----ALNCIDVLRSFAVIGHSSRGSMSRPIILPQLS 888
                   L++  VE  T + EV       L+ +DVL SFA +      S   P   P+++
Sbjct: 579  YRSCQKELVDRVVETVTSFSEVFEDLAGLLSEMDVLLSFADLA----ASCPTPYCRPEIT 638

Query: 889  NSTTSPEKQGPVLQINGLWHPYALVENGESPVPNDMILGPDKDGYHPHTLLLTGPNMGGK 948
            +S          + + G  HP    ++  + +PND  L   K  +     ++TGPNMGGK
Sbjct: 639  SSDAGD------IVLEGSRHPCVEAQDWVNFIPNDCRLMRGKSWFQ----IVTGPNMGGK 698

Query: 949  STLLRSTCLAVILAQLGCYVPCETCTLSVVDTIFTRLGATDRIMTGESTFLVECSETASV 1008
            ST +R   + V++AQ+G +VPC+  ++S+ D IF R+GA D  + G STF+ E  ETAS+
Sbjct: 699  STFIRQVGVIVLMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQEMLETASI 758

Query: 1009 LQHATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHP 1033
            L+ A+  SL+I+DELGRGTST+DG+ +A+A+  HL++      LFATH+H LT    ++ 
Sbjct: 759  LKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKRAPTLFATHFHELTALAQANS 818

The following BLAST results are available for this feature:
BLAST of CmaCh05G013350 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SMV70.0e+0060.82DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana OX=3702 GN=MSH7 PE=1 SV... [more]
O047169.7e-11832.73DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana OX=3702 GN=MSH6 PE=1 SV... [more]
O745023.7e-11732.87DNA mismatch repair protein msh6 OS=Schizosaccharomyces pombe (strain 972 / ATCC... [more]
Q55GU93.1e-11632.17DNA mismatch repair protein Msh6 OS=Dictyostelium discoideum OX=44689 GN=msh6 PE... [more]
E1BYJ23.8e-11430.78DNA mismatch repair protein Msh6 OS=Gallus gallus OX=9031 GN=MSH6 PE=3 SV=2[more]
BLAST of CmaCh05G013350 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G24495.10.0e+0060.82MUTS homolog 7 [more]
AT4G02070.16.9e-11932.73MUTS homolog 6 [more]
AT4G02070.27.7e-11832.63MUTS homolog 6 [more]
AT4G25540.13.4e-5725.65homolog of DNA mismatch repair protein MSH3 [more]
AT3G18524.11.2e-4926.34MUTS homolog 2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007696DNA mismatch repair protein MutS, coreSMARTSM00533DNAendcoord: 574..823
e-value: 7.3E-20
score: 82.0
IPR007696DNA mismatch repair protein MutS, corePFAMPF05192MutS_IIIcoord: 559..777
e-value: 1.4E-31
score: 110.2
IPR000432DNA mismatch repair protein MutS, C-terminalSMARTSM00534mutATP5coord: 844..1031
e-value: 1.8E-111
score: 386.3
IPR000432DNA mismatch repair protein MutS, C-terminalPFAMPF00488MutS_Vcoord: 848..1033
e-value: 9.2E-78
score: 260.6
IPR000432DNA mismatch repair protein MutS, C-terminalPROSITEPS00486DNA_MISMATCH_REPAIR_2coord: 925..941
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 801..1077
e-value: 2.9E-92
score: 311.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 806..1035
IPR007860DNA mismatch repair protein MutS, connector domainPFAMPF05188MutS_IIcoord: 391..538
e-value: 4.4E-12
score: 46.4
IPR007695DNA mismatch repair protein MutS-like, N-terminalPFAMPF01624MutS_Icoord: 271..381
e-value: 2.3E-29
score: 101.9
IPR036678MutS, connector domain superfamilyGENE3D3.30.420.110MutS, connector domaincoord: 389..555
e-value: 3.7E-33
score: 117.0
IPR036678MutS, connector domain superfamilySUPERFAMILY53150DNA repair protein MutS, domain IIcoord: 404..569
IPR016151DNA mismatch repair protein MutS, N-terminalGENE3D3.40.1170.10DNA repair protein MutS, domain Icoord: 226..386
e-value: 1.3E-52
score: 180.0
IPR016151DNA mismatch repair protein MutS, N-terminalSUPERFAMILY55271DNA repair protein MutS, domain Icoord: 257..378
NoneNo IPR availableGENE3D1.10.1420.10coord: 556..784
e-value: 2.9E-37
score: 131.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..131
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..116
NoneNo IPR availablePANTHERPTHR11361:SF138DNA MISMATCH REPAIR PROTEIN MSH7coord: 254..1088
NoneNo IPR availableCDDcd03286ABC_MSH6_eukcoord: 811..1026
e-value: 1.08954E-118
score: 362.516
IPR017261DNA mismatch repair protein MutS/MSHPIRSFPIRSF037677Msh6coord: 75..730
e-value: 2.0E-123
score: 411.5
coord: 732..1071
e-value: 1.7E-120
score: 401.7
IPR045076DNA mismatch repair MutS familyPANTHERPTHR11361DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBERcoord: 254..1088
IPR036187DNA mismatch repair protein MutS, core domain superfamilySUPERFAMILY48334DNA repair protein MutS, domain IIIcoord: 557..779

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G013350.1CmaCh05G013350.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0036297 interstrand cross-link repair
biological_process GO:0043570 maintenance of DNA repeat elements
biological_process GO:0000710 meiotic mismatch repair
biological_process GO:0045910 negative regulation of DNA recombination
biological_process GO:0006290 pyrimidine dimer repair
biological_process GO:0006298 mismatch repair
cellular_component GO:0032301 MutSalpha complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0008094 ATP-dependent activity, acting on DNA
molecular_function GO:0000400 four-way junction DNA binding
molecular_function GO:0032405 MutLalpha complex binding
molecular_function GO:0032357 oxidized purine DNA binding
molecular_function GO:0032143 single thymine insertion binding
molecular_function GO:0030983 mismatched DNA binding