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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCTTCCATTCGATTGGATTCGAAACAGTACTTCACAACCAGCGGTCTTGTGATTGGTTATGCGCTTTGTTCGAGCTTGCTTGCTGTGATAAACAAGTTCGCCATTACCAAATTTAACTATCCTGGCCTTTTGACGGCTCTGCAGTATCTAACCTCTGCTGTGGGAGTTTGGGTTTTAGGGAAACTTGGGTTTTTGCATCATGATCCCTTTATATATGCAACTGCTAAGAAGTTTTTGCCTGCCGCGTTTGTGTTCTATCTAGCAATCTTTACCAACACAAATCTTCTTCGTCATGCTAATGTGGATACCTTCATAGTGTTCAGATCCTGCACACCCCTTTTAGTTGCCATTGCTGATACCGCGTTTAGATACCAACCCTGTCCATCTAAACTCACGTTTGGATCGCTGCTGATCATTTTGGGTGGAGCTGTTGGGTATGTGGCTACAGATTCTGCATTTACTTTGACTGCTTATTCATGGGCATTTGCTTATTTGGTGACAATTACTACTGAGATGGTTTACATCAAACATATGGTTACAAATCTTGGACTGAACACATGGGGTTTTGTGCTTTACAATAATCTAATTTCCTTGATCTTGGCTCCTGCGTTCTGGTTCATTACTGGAGAGTATGTTGATGTTTTCTCTGCCTTAGGTTCAAGTAAAGGAGATTGGTTTCAATATGATGCATTTTATGCAGTATCCTTATCTTGTGTATTTGGTTTCCTCATAAGCTTCTTTGGTTTTGCGGCACGAAAGGCGATTTCAGCGACTGCCTTCACGGTTACTGGTGTGGTTAATAAGTTCTTAACAGTTGCCATCAATGTGGTTATTTGGGATAAGCACGCGAACCCATTTGGTTTGGTCTGCCTCCTTTTCACAATTTCAGGGGGTGTTCTCTATCAGCAATCGGTTTCTGGAGTTGGCAGTGCCCCGTCGACCGCGGATAAGCCTACAGGAAACGATAATGATCCCGAGGAGAACCATGGCAAGCCTGGTAAACTTTCCTCCGTATGA mRNA sequence ATGTCTTCCATTCGATTGGATTCGAAACAGTACTTCACAACCAGCGGTCTTGTGATTGGTTATGCGCTTTGTTCGAGCTTGCTTGCTGTGATAAACAAGTTCGCCATTACCAAATTTAACTATCCTGGCCTTTTGACGGCTCTGCAGTATCTAACCTCTGCTGTGGGAGTTTGGGTTTTAGGGAAACTTGGGTTTTTGCATCATGATCCCTTTATATATGCAACTGCTAAGAAGTTTTTGCCTGCCGCGTTTGTGTTCTATCTAGCAATCTTTACCAACACAAATCTTCTTCGTCATGCTAATGTGGATACCTTCATAGTGTTCAGATCCTGCACACCCCTTTTAGTTGCCATTGCTGATACCGCGTTTAGATACCAACCCTGTCCATCTAAACTCACGTTTGGATCGCTGCTGATCATTTTGGGTGGAGCTGTTGGGTATGTGGCTACAGATTCTGCATTTACTTTGACTGCTTATTCATGGGCATTTGCTTATTTGGTGACAATTACTACTGAGATGGTTTACATCAAACATATGGTTACAAATCTTGGACTGAACACATGGGGTTTTGTGCTTTACAATAATCTAATTTCCTTGATCTTGGCTCCTGCGTTCTGGTTCATTACTGGAGAGTATGTTGATGTTTTCTCTGCCTTAGGTTCAAGTAAAGGAGATTGGTTTCAATATGATGCATTTTATGCAGTATCCTTATCTTGTGTATTTGGTTTCCTCATAAGCTTCTTTGGTTTTGCGGCACGAAAGGCGATTTCAGCGACTGCCTTCACGGTTACTGGTGTGGTTAATAAGTTCTTAACAGTTGCCATCAATGTGGTTATTTGGGATAAGCACGCGAACCCATTTGGTTTGGTCTGCCTCCTTTTCACAATTTCAGGGGGTGTTCTCTATCAGCAATCGGTTTCTGGAGTTGGCAGTGCCCCGTCGACCGCGGATAAGCCTACAGGAAACGATAATGATCCCGAGGAGAACCATGGCAAGCCTGGTAAACTTTCCTCCGTATGA Coding sequence (CDS) ATGTCTTCCATTCGATTGGATTCGAAACAGTACTTCACAACCAGCGGTCTTGTGATTGGTTATGCGCTTTGTTCGAGCTTGCTTGCTGTGATAAACAAGTTCGCCATTACCAAATTTAACTATCCTGGCCTTTTGACGGCTCTGCAGTATCTAACCTCTGCTGTGGGAGTTTGGGTTTTAGGGAAACTTGGGTTTTTGCATCATGATCCCTTTATATATGCAACTGCTAAGAAGTTTTTGCCTGCCGCGTTTGTGTTCTATCTAGCAATCTTTACCAACACAAATCTTCTTCGTCATGCTAATGTGGATACCTTCATAGTGTTCAGATCCTGCACACCCCTTTTAGTTGCCATTGCTGATACCGCGTTTAGATACCAACCCTGTCCATCTAAACTCACGTTTGGATCGCTGCTGATCATTTTGGGTGGAGCTGTTGGGTATGTGGCTACAGATTCTGCATTTACTTTGACTGCTTATTCATGGGCATTTGCTTATTTGGTGACAATTACTACTGAGATGGTTTACATCAAACATATGGTTACAAATCTTGGACTGAACACATGGGGTTTTGTGCTTTACAATAATCTAATTTCCTTGATCTTGGCTCCTGCGTTCTGGTTCATTACTGGAGAGTATGTTGATGTTTTCTCTGCCTTAGGTTCAAGTAAAGGAGATTGGTTTCAATATGATGCATTTTATGCAGTATCCTTATCTTGTGTATTTGGTTTCCTCATAAGCTTCTTTGGTTTTGCGGCACGAAAGGCGATTTCAGCGACTGCCTTCACGGTTACTGGTGTGGTTAATAAGTTCTTAACAGTTGCCATCAATGTGGTTATTTGGGATAAGCACGCGAACCCATTTGGTTTGGTCTGCCTCCTTTTCACAATTTCAGGGGGTGTTCTCTATCAGCAATCGGTTTCTGGAGTTGGCAGTGCCCCGTCGACCGCGGATAAGCCTACAGGAAACGATAATGATCCCGAGGAGAACCATGGCAAGCCTGGTAAACTTTCCTCCGTATGA Protein sequence MSSIRLDSKQYFTTSGLVIGYALCSSLLAVINKFAITKFNYPGLLTALQYLTSAVGVWVLGKLGFLHHDPFIYATAKKFLPAAFVFYLAIFTNTNLLRHANVDTFIVFRSCTPLLVAIADTAFRYQPCPSKLTFGSLLIILGGAVGYVATDSAFTLTAYSWAFAYLVTITTEMVYIKHMVTNLGLNTWGFVLYNNLISLILAPAFWFITGEYVDVFSALGSSKGDWFQYDAFYAVSLSCVFGFLISFFGFAARKAISATAFTVTGVVNKFLTVAINVVIWDKHANPFGLVCLLFTISGGVLYQQSVSGVGSAPSTADKPTGNDNDPEENHGKPGKLSSV
Homology
BLAST of CmaCh05G013160 vs. ExPASy Swiss-Prot
Match: Q84L08 (GDP-fucose transporter 1 OS=Arabidopsis thaliana OX=3702 GN=GFT1 PE=1 SV=1) HSP 1 Score: 464.9 bits (1195), Expect = 7.7e-130 Identity = 247/340 (72.65%), Postives = 279/340 (82.06%), Query Frame = 0
Query: 1 MSSIRLDSKQYFTTSGLVIGYALCSSLLAVINKFAITKFNYPGLLTALQYLTSAVGVWVL 60
MSS R DS + TTS LVIGYALCSSLLAVINK AIT FNYPGLLTALQYLT V V++L
Sbjct: 1 MSSSRFDSNKQLTTSSLVIGYALCSSLLAVINKLAITYFNYPGLLTALQYLTCTVAVYLL 60
Query: 61 GKLGFLHHDPFIYATAKKFLPAAFVFYLAIFTNTNLLRHANVDTFIVFRSCTPLLVAIAD 120
GK G ++HDPF + TAKKFLPAA VFYLAIFTNTNLLRHANVDTFIVFRS TPLLVAIAD
Sbjct: 61 GKSGLINHDPFTWDTAKKFLPAAIVFYLAIFTNTNLLRHANVDTFIVFRSLTPLLVAIAD 120
Query: 121 TAFRYQPCPSKLTFGSLLIILGGAVGYVATDSAFTLTAYSWAFAYLVTITTEMVYIKHMV 180
T FR QP PS+LTF SL++IL GAVGYVATDS+FTLTAYSWA AYLVTITTEMVYIKHMV
Sbjct: 121 TVFRSQPLPSRLTFLSLVVILAGAVGYVATDSSFTLTAYSWALAYLVTITTEMVYIKHMV 180
Query: 181 TNLGLNTWGFVLYNNLISLILAPAFWFITGEYVDVFSALGSSKGDWFQYDAFYAVSLSCV 240
+N+ LN WG VLYNNL+SL++AP FWF+TGE+ +VF+AL ++G+ F+ AF +V+ SCV
Sbjct: 181 SNIKLNIWGLVLYNNLLSLMIAPVFWFLTGEFTEVFAALSENRGNLFEPYAFSSVAASCV 240
Query: 241 FGFLISFFGFAARKAISATAFTVTGVVNKFLTVAINVVIWDKHANPFGLVCLLFTISGGV 300
FGFLIS+FGFAAR AISATAFTVTGVVNKFLTV INV+IWDKHA P GLVCLLFTI GGV
Sbjct: 241 FGFLISYFGFAARNAISATAFTVTGVVNKFLTVVINVLIWDKHATPVGLVCLLFTICGGV 300
Query: 301 LYQQSVSGVGSAPSTADKPTGNDNDPEE-NHGKPGKLSSV 340
YQQSV ++K + + EE PGKL+SV
Sbjct: 301 GYQQSVKLDKPIEKVSEKDSEKGEEDEELTQLVPGKLASV 340
BLAST of CmaCh05G013160 vs. ExPASy Swiss-Prot
Match: Q9S845 (GDP-mannose transporter GONST3 OS=Arabidopsis thaliana OX=3702 GN=GONST3 PE=2 SV=1) HSP 1 Score: 303.5 bits (776), Expect = 3.0e-81 Identity = 164/313 (52.40%), Postives = 212/313 (67.73%), Query Frame = 0
Query: 16 GLVIGYALCSSLLAVINKFAITKFNYPGLLTALQYLTSAVGVWVLGKLGFLHHDPFIYAT 75
G+ GY L +SLL++INK+AI KF YPG LTA+QY TSA GV + ++ + HD T
Sbjct: 37 GVAAGYCLSASLLSIINKWAIMKFPYPGALTAMQYFTSAAGVLLCAQMKLIEHDSLNLLT 96
Query: 76 AKKFLPAAFVFYLAIFTNTNLLRHANVDTFIVFRSCTPLLVAIADTAFRYQPCPSKLTFG 135
+FLPAA +FYL++FTN+ LL HANVDTFIVFRS P+ VAI +T F +QP PS T+G
Sbjct: 97 MWRFLPAAMIFYLSLFTNSELLLHANVDTFIVFRSAVPIFVAIGETLFLHQPWPSVKTWG 156
Query: 136 SLLIILGGAVGYVATDSAFTLTAYSWAFAYLVTITTEMVYIKHMVTNLGLNTWGFVLYNN 195
SL I GG++ YV TD FT+ AYSWA AYLV++T + VYIKH+V +GLNTWG VLYNN
Sbjct: 157 SLATIFGGSLLYVFTDYQFTIAAYSWALAYLVSMTIDFVYIKHVVMTIGLNTWGLVLYNN 216
Query: 196 LISLILAPAFWFITGEYVDVFSALGSSKGDWFQYDAFYAVSLSCVFGFLISFFGFAARKA 255
L +L+L P I GE + + + + DW+ V LSC+FG ISFFGF+ R+A
Sbjct: 217 LEALLLFPLELLIMGELKKIKHEI-TDETDWYSLQVVLPVGLSCLFGLAISFFGFSCRRA 276
Query: 256 ISATAFTVTGVVNKFLTVAINVVIWDKHANPFGLVCLLFTISGGVLYQQSVSGVGSAPST 315
ISAT FTV G+VNK LTV IN+++WDKH+ G + LL + GGV+YQQS +A
Sbjct: 277 ISATGFTVLGIVNKLLTVVINLMVWDKHSTFVGTLGLLVCMFGGVMYQQSTIKKPNATQE 336
Query: 316 ADKPTGNDNDPEE 329
A KP D + E+
Sbjct: 337 A-KPQEQDEEQEK 347
BLAST of CmaCh05G013160 vs. ExPASy Swiss-Prot
Match: A5DIN8 (GDP-mannose transporter OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=VRG4 PE=3 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 1.4e-09 Identity = 65/297 (21.89%), Postives = 126/297 (42.42%), Query Frame = 0
Query: 18 VIGYALCSSLLAVINKFAI--TKFNYPGLLTALQYLTSAVGVWVLGKLGFLHHDPFIYAT 77
+ Y S L+ V NKF + +FN L A+Q V + L LG + + F
Sbjct: 40 IFAYCASSILMTVTNKFVVGAYEFNLNFFLLAVQAAVCLVTIATLKGLGIITYRQFNKDE 99
Query: 78 AKKFLPAAFVFYLAIFTNTNLLRHANVDTFIVFRSCTPLLVAIADTAFRYQPCPSKLTFG 137
AKK+ P AF+ L I+T++ L++ ++ + +F++ T +L+A + + +
Sbjct: 100 AKKWFPIAFLLVLMIYTSSKALQYLSIPVYTIFKNLTIILIAYGEVIWFGGKVTTMALGS 159
Query: 138 SLLIILGGAVGYVATDSAFT----------LTAYSWAFAYLVTITTEMVYIKHMVTNLGL 197
+L++L + Y D+A T Y+W F + ++ ++ +
Sbjct: 160 FILMVLSSVIAYYG-DTAETGEKTAEMHLLYLGYAWMFTNCFSSAAFVLIMRKRIKLTNF 219
Query: 198 NTWGFVLYNNLISLILAPAFWFITGEYVDVFSALGSSKGDWFQYDAFYAVSLSCVFGFLI 257
+ + YNNL+SL L F F+ ++ V L + + + + LS I
Sbjct: 220 KDFDTMYYNNLLSLPLLLVFSFLFEDWSSV--NLNKNFPPDNRNTTIFVMILSGASSVGI 279
Query: 258 SFFGFAARKAISATAFTVTGVVNKFLTVAINVVIWDKHANPFGLVCLLFTISGGVLY 303
S+ + S+T +++ G +NK +V ++ N + + + GV Y
Sbjct: 280 SYCSAWCVRVTSSTTYSMVGALNKLPIALSGLVFFNAAVNFWSVSSIFVGFLAGVFY 333
BLAST of CmaCh05G013160 vs. TAIR 10
Match: AT5G19980.1 (golgi nucleotide sugar transporter 4 ) HSP 1 Score: 464.9 bits (1195), Expect = 5.4e-131 Identity = 247/340 (72.65%), Postives = 279/340 (82.06%), Query Frame = 0
Query: 1 MSSIRLDSKQYFTTSGLVIGYALCSSLLAVINKFAITKFNYPGLLTALQYLTSAVGVWVL 60
MSS R DS + TTS LVIGYALCSSLLAVINK AIT FNYPGLLTALQYLT V V++L
Sbjct: 1 MSSSRFDSNKQLTTSSLVIGYALCSSLLAVINKLAITYFNYPGLLTALQYLTCTVAVYLL 60
Query: 61 GKLGFLHHDPFIYATAKKFLPAAFVFYLAIFTNTNLLRHANVDTFIVFRSCTPLLVAIAD 120
GK G ++HDPF + TAKKFLPAA VFYLAIFTNTNLLRHANVDTFIVFRS TPLLVAIAD
Sbjct: 61 GKSGLINHDPFTWDTAKKFLPAAIVFYLAIFTNTNLLRHANVDTFIVFRSLTPLLVAIAD 120
Query: 121 TAFRYQPCPSKLTFGSLLIILGGAVGYVATDSAFTLTAYSWAFAYLVTITTEMVYIKHMV 180
T FR QP PS+LTF SL++IL GAVGYVATDS+FTLTAYSWA AYLVTITTEMVYIKHMV
Sbjct: 121 TVFRSQPLPSRLTFLSLVVILAGAVGYVATDSSFTLTAYSWALAYLVTITTEMVYIKHMV 180
Query: 181 TNLGLNTWGFVLYNNLISLILAPAFWFITGEYVDVFSALGSSKGDWFQYDAFYAVSLSCV 240
+N+ LN WG VLYNNL+SL++AP FWF+TGE+ +VF+AL ++G+ F+ AF +V+ SCV
Sbjct: 181 SNIKLNIWGLVLYNNLLSLMIAPVFWFLTGEFTEVFAALSENRGNLFEPYAFSSVAASCV 240
Query: 241 FGFLISFFGFAARKAISATAFTVTGVVNKFLTVAINVVIWDKHANPFGLVCLLFTISGGV 300
FGFLIS+FGFAAR AISATAFTVTGVVNKFLTV INV+IWDKHA P GLVCLLFTI GGV
Sbjct: 241 FGFLISYFGFAARNAISATAFTVTGVVNKFLTVVINVLIWDKHATPVGLVCLLFTICGGV 300
Query: 301 LYQQSVSGVGSAPSTADKPTGNDNDPEE-NHGKPGKLSSV 340
YQQSV ++K + + EE PGKL+SV
Sbjct: 301 GYQQSVKLDKPIEKVSEKDSEKGEEDEELTQLVPGKLASV 340
BLAST of CmaCh05G013160 vs. TAIR 10
Match: AT1G76340.1 (golgi nucleotide sugar transporter 3 ) HSP 1 Score: 303.5 bits (776), Expect = 2.1e-82 Identity = 164/313 (52.40%), Postives = 212/313 (67.73%), Query Frame = 0
Query: 16 GLVIGYALCSSLLAVINKFAITKFNYPGLLTALQYLTSAVGVWVLGKLGFLHHDPFIYAT 75
G+ GY L +SLL++INK+AI KF YPG LTA+QY TSA GV + ++ + HD T
Sbjct: 37 GVAAGYCLSASLLSIINKWAIMKFPYPGALTAMQYFTSAAGVLLCAQMKLIEHDSLNLLT 96
Query: 76 AKKFLPAAFVFYLAIFTNTNLLRHANVDTFIVFRSCTPLLVAIADTAFRYQPCPSKLTFG 135
+FLPAA +FYL++FTN+ LL HANVDTFIVFRS P+ VAI +T F +QP PS T+G
Sbjct: 97 MWRFLPAAMIFYLSLFTNSELLLHANVDTFIVFRSAVPIFVAIGETLFLHQPWPSVKTWG 156
Query: 136 SLLIILGGAVGYVATDSAFTLTAYSWAFAYLVTITTEMVYIKHMVTNLGLNTWGFVLYNN 195
SL I GG++ YV TD FT+ AYSWA AYLV++T + VYIKH+V +GLNTWG VLYNN
Sbjct: 157 SLATIFGGSLLYVFTDYQFTIAAYSWALAYLVSMTIDFVYIKHVVMTIGLNTWGLVLYNN 216
Query: 196 LISLILAPAFWFITGEYVDVFSALGSSKGDWFQYDAFYAVSLSCVFGFLISFFGFAARKA 255
L +L+L P I GE + + + + DW+ V LSC+FG ISFFGF+ R+A
Sbjct: 217 LEALLLFPLELLIMGELKKIKHEI-TDETDWYSLQVVLPVGLSCLFGLAISFFGFSCRRA 276
Query: 256 ISATAFTVTGVVNKFLTVAINVVIWDKHANPFGLVCLLFTISGGVLYQQSVSGVGSAPST 315
ISAT FTV G+VNK LTV IN+++WDKH+ G + LL + GGV+YQQS +A
Sbjct: 277 ISATGFTVLGIVNKLLTVVINLMVWDKHSTFVGTLGLLVCMFGGVMYQQSTIKKPNATQE 336
Query: 316 ADKPTGNDNDPEE 329
A KP D + E+
Sbjct: 337 A-KPQEQDEEQEK 347
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q84L08 | 7.7e-130 | 72.65 | GDP-fucose transporter 1 OS=Arabidopsis thaliana OX=3702 GN=GFT1 PE=1 SV=1 | [more] |
| Q9S845 | 3.0e-81 | 52.40 | GDP-mannose transporter GONST3 OS=Arabidopsis thaliana OX=3702 GN=GONST3 PE=2 SV... | [more] |
| A5DIN8 | 1.4e-09 | 21.89 | GDP-mannose transporter OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G19980.1 | 5.4e-131 | 72.65 | golgi nucleotide sugar transporter 4 | [more] |
| AT1G76340.1 | 2.1e-82 | 52.40 | golgi nucleotide sugar transporter 3 | [more] |
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR004853 | Sugar phosphate transporter domain | PFAM | PF03151 | TPT | coord: 23..302
e-value: 7.0E-14
score: 51.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 309..339 |
| None | No IPR available | PANTHER | PTHR11132 | SOLUTE CARRIER FAMILY 35 | coord: 8..316 |
| IPR029663 | GDP-fucose transporter 1, plant | PANTHER | PTHR11132:SF333 | INTEGRAL MEMBRANE PROTEIN-LIKE | coord: 8..316 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015783 |
GDP-fucose transmembrane transport |
| biological_process |
GO:0015780 |
nucleotide-sugar transmembrane transport |
| cellular_component |
GO:0005794 |
Golgi apparatus |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0015297 |
antiporter activity |
| molecular_function |
GO:0005457 |
GDP-fucose transmembrane transporter activity |
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