CmaCh05G007690 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G007690
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	splicing factor 3B subunit 2-like
Location	Cma_Chr05: 4519186 .. 4525954 (+)
RNA-Seq Expression	CmaCh05G007690
Synteny	CmaCh05G007690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGGAGGGGCAATTACGACTTTTCACATTCCCGTTACCCCCCTCTCAAGAACTCCATCACTCTAATGGCGTCCGTTCAATTTCTCTCACTTCAAATTTAGCTATGCAACACACAAACACACAGAAAGATTTTTGAGATTTCCCTTCCACCACCTGCCTGATTGTCTCCCAATATAATTCTAAGAACTCCACCGCTAACTCCGCCTTGCCTCTCGTTTCTGCTCTCACCGGAGAAGTTACAGAAAACCTGCTTTCCGTCTTGCCCTTACTATCCTCGTCCGCCGTGGCCCTGCTGGAAACAGGTTATTCTTCTTCTTTACTCTATGGTTTTTGTTATTTTTCTGCCTTTTACACCTCGGTTCTGGTTGTTTTCCTGTTCATCATTTCCTGATTTCCGTACATTTCTATTTTGATTTGTTATGTTCTGTTCTTCTCTTCATTATACAGTTGCGTACGCGGTTTCTTCATTGATCGAGTTGTGCGAAGACTGAATCCGAGAATGACTGCGGAGGTTTCTCAGTCGAATGGAGTTGTCTCGAATTGCGACTTGGACCTTAATTCTAACCCTAAATCTGGCGCCGCCAAGAAGTCGCGGGAAAGCGAACGACGTCGTCGTCGGCGAAAGCAGAAGAAGAACCAGAAGACTTCTAAGGTGGAGGCTACTGCTGGAGAGGATAGTGACGCTTCTGGCGACGATACGAAGGAGAACGATAATCCACTGCAGGTTTATTTATTTATTTAAATTTTTAGTTTTATTTTAGGTTGTTCGTTCACCTAAGAAAAAAGGAGTTAAGAATGTTGATTGTTGGACAGCGAGAACATTCACGGTTCAATTCCCTCTTCCTTTTTGCTTCGTGCTATATAGTTAAATTAATTGCTTGATGTTAATGAGCCATTCAAAATGCATTTATTTCTTTTTGAATTTATAGGTTGTTGAGAAAGTAGAAATCGAATATGTACCTGACAAGGCCGAACTGGATGATAGCTTGGATGAAGAATTTAGAAAAGTTTTTGAGAAATTCAGTTTCAGTGAGATAGCTGGTACTGAGGTAAGTTTAAACTTACCATTGTAAGTGTGCTTATCAGTTCCATCCCTTCAGTCATGATCAATCCTATGAACTTTCTGCTTTCTAATTCTATATAGGAGAATGAAAACAAAGACGAGTCTGCCCAAAATGCAGCATCTAAGAAGTCAGACTCCGATTCTGATGATGAAGAACTTGATAACCAACAAAAGGAAAAAGGCTTGTCAAACAAGAAAAAGAAGGTGCTAGAGCCTTGCTATTATCTTATCATTTATGTAGAAAAGTCGGCATTGGTTATTGCTTGTCATAGTGATCTGAAAGTAAATGATTTTTGTCACTTTCAGCTGCAACGGCGTATGAAGATTGCAGAGCTGAAGCAGATTTGTTTGAGACCTGATGTTGTTGAGGTAGAAAGGGAGCATTTCATACTGTATTGCATGTATCTAATACCTTAAAACATCATCATAAAAGTCTGAAACCGGAGTGTCAGGTTGCATTTTCTGGTTATGATGTTCTTGTGTGCTTGTCTGTTTACTGTTCAGATCTGGGACGCAACTGCAGCTGATCCGAAGTTACTTGTTTATCTAAAATCTTATCGCAACACCGTTCCTGTGCCAAGGCATTGGTGTCAAAAGCGGAAATTTTTACAGGTTAGTAATTCTGCTGATATTAAATTTACAACTATATACATCTATGCACAATTGATGGGTATATTCAACATGCGGAAATGAAAGAGTTGAGTGAGGGAAGATCGTGTTGATAAGGTTTCTCTTATATATACATATCTGGTTCTTGCAGGGGTGTGGCTGTGACATTTTTCGAGCTGGAACTTGTAGGTGTTTGCTAAGAGCACCCTTGGATTATTTATATTTTAGTATATTTGGTGGTGTGGGCTGGGATGTGAATAATTTTAAGTTGCATTGATGGGCAATTTTGTACCCATGATTTTTCCCCTTATATATATCTACTTTGATATAAAAAATCAGTCTGTTTTGAAATGTTAGACGCCCTTTTCATTAATAATGATCCTGCCAATCTATGATTCTATTTATGAATTAATATCTTAATTTGGATTGTATCTTAGTAGCAGTTGGATTTCTTTTGTAGGGGAAGCGTGGTATTGAAAAACAACCATTCCAACTTCCAGATTTTATTGCAGCAACAGGAATTGAAAAGATTAGACAGGTAGCTTCCACTGCAACTTTAGTTCATATTATGCTGGCAAAACCTGTTTTCAGTCTAACTGTATTTCAACACACATTCTATGTCTAATATGATGCCTGAAATTGCCAATTGTTCTTTTCCAGAAAAAGAAATTTCCAATTCTTTATTATATTTGTTATGCAGGCCTACATAGAGAAAGAGGATAGTAAAAAATTGAAGCAGAAGCAAAGAGAACGAATGCAGCCAAAGATGGGAAAGATGGATATTGATTATCAGGTTTTTACTTTTTTTCTTTGATGTATTTGACTAGTAACATCTAGATTTATGTCTGCTTCTAGATGTCTTCGTTGTCATGCCCCAAATGTGAATATTCTAACTAATTAGATTGGCTCATGTTAGGTTCTTCATGATGCTTTTTTTAAGTACCAAACAAAGCCAAAGCTGACAACTCTTGGAGATCTGTACTATGAAGGGAAAGAATTCGAGGTAATTAGGCTATTACCATTATTTTTCAACAATACTCTTTGGTCTCTAGGAACCAGTGCATCTGGTTATATTTCATGTGTTAGGATATGATTGGCTAATGTGCATTTTAAGTTCATAAATAAGGAGCTGGTAGTGACTGCTGCTTGTATACAGATATTGTGTAGTTAATGAGTTGGAATTTTTTTTCTTACTTATTTCTTCCTTGGCATATAGGTTAAGTTAAGGGAGATGAAACCAGGCATGCTGTCGCATGAATTGAAAGAAGCGCTTGGCATGCCAGATGGCGCTCCTCCTCCATGGCTCATCAACATGCAGGTTCAGCAATTAAACTTATTGTCAAACTGAAATCTGACCTCGTGTTTTCTTAAAGCTGTTTTTATTTGTGATCATAATTTTCTTTTGATTTTCTCCATAGAGATATGGTCCACCTCCATCCTATCCAGATCTAAAAATTCCAGGACTCAATGCTCCCATTCCACCTGGAGCTAGCTTTGGCTATCATCCTGGTGGCTGGGGCAAGCCTCCTGTAGATGAAGTAAGTATTTGACTTGTCATTTTTTTTTTCAGTTTAATGCCCATCAGATAAATCTTACCATTGTTCTTTCTGTTTTCATGGATAGTATGGTCGTCCGCTGTATGGAGATGTTTTTGGTGTTCAGCAGCAAGAACAAGCTAACTATGAGGTATCTTATTTATTTATTTTCAACAAAAGATTTTTCTTTTGATTTAGAAGGAAAATCCATGAAAAGTAGAACTAAGTATCCAACATTTAGGTTTTTATAAGACTTGCTCAAACTGTCCCTTGGAGGACATCCGATAAATTTGGATTGATATAAGACCCGCTCAAACTAGAGCTATGGAAAAGGGGTAGAATTACAGATATAAATGGTGAACATCAATTTGGAGATGTAAATTTACCATATCCAATATTTGTTCTTAATCACTCTATGTTTGAGATACATCGTTGCTGAAACCCTTTTCGACTCCAGTATGGATTCTCTTTTATGCCAATTCCTTACTGTTTTGCACTGAGATTTTGAGACATTCTTTTATACCAAGTTTCTCTTAAGAAAAAGGTTTCGATAATAATGTGATTCTCTTATCCATCCCCTTTTGAGTTCTGTGTATATGTCGTAGCTGATTGTTGATGCCTTTGACAGGAGGAACCTGTTGATAAGACCAAACATTGGGGTGATTTGGAAGAAGAGGAAGAAGAAGAGGCGGAGGAGGAGGAGGATGAGGAGGAACTTGAAGAAGAGGAAATGCAAGATGGCATTGAATCTGTGGATAGTCTATCGAGGTATGCCATTTTATACCATTGGTTTTTGTTTATAAAGACTTTTGTAATCATCTCTTATGTCTCATTTTGTCTAATTGAAGCTTGTTTTTACTGTGGTTGAGTTTTTTTCCCCTTTCTCTTTTCACTTTATTCCTCGTGTATTCTTTCATTTATTTAAAGAAAGTCTGGCTTTTTATCCCATTTTGTTTAACATTCTTATCTGAAAAGAATAAAATATTCTTGAATGTTCAAATTTCCAACATGAACACAATGAAGAAAAGTTAAAGATATGACATGTTAATTCTCCAACATCAAGACATGTTTGATCAAGTCACGTCAGTTAATAGGAATGTTTTGGATACATTTGAATGTTTTGGTTTATTTCATGCACTGTGGTAATCCTGCTGAAGGAATTGGGATTCCCATTTGGGGTAGTATGTGGTTGGTAATATGGTTTGAGGCCTCTCCTTTTCTTTTCAATAGAAACCTTATCTTTAGCTAGAATAGACTGAACTTAAAAGATTAAAACCATGTTGACTGCCCCAAAACGGTTATGTTCTGTCCCAGCCATGTCCAAGTCCAATCCAATTGCATGTTTAAACTGAATATCTAATTGATTGAATGCTTATTTAGCCTAGTCTTATATGCATCCGTTTTGAAGCATACCTTCATGGTTGTTTGTCCCTGACCTTTTAGATATCTAAACCTGAACTTTGGAGTTTGTTTATGCTTCCCTGTTCGATAATATTCTCTGGATTGATTCAGTAATGAGTTCAAATATTTTGTTTGTACTGGATTCTGAACCTCTGTGATCATCCTGTAAGCTGTTCAATAATTGACTTTTCTGTTTCATGCAGCACCCCTACTGGTGTGGAGACACCTGATGTTATTGACCTTCGGAAACAACAGAGGAAGGAACCGGACAGGCCCCTTTACCAAGTAAGTAAACAGTCTGTGAAAGTAATTTCATCAGAATTTGCCTTCTTTCTATTTTTGTTTTCCAAACTGAAATGTGATTTACCAACTGTTTGGTTCTTGAAGGTCCTAGAAGCAAAGGAAGAGAAAGTTGCTCCTGGGACTTTGCTTGGAACTACACATACGTATGCTGTTTATTTGCTTTTATCTTTTTATGATTGTTGTCTAACTTCTCTTTCTTTTTGTGCTTAAATTTGACTCTTTGATGTGTATCTCTCTCTTCAGTTATGTTATTAGTGGCGGTACTCAAGATAAGACGGGAGCCAAAAGGGTAAGCAACTTTCTATTGTTTCATGTTAATATGTAAAGGGCAATTATTCAACAAAAGTTAATCTATCTGTTCATGGCTATTTATCTTGTAGGTTGACTTGCTCAGAGGTCAAAAAACTGATAAAGTAGATGTTACTTTACGACCAGAAGAATTGGAAGCTATGGAAAATGTTCTACCTGCGAAGTATGTGATATCACCTAGATGTATAGTTTTGGCATTCATGTTATAGTATGGTTGCAGCTTCTAATTCTCTTTATTCTCTTTTCACAGGTACGAGGAGGCCAGAGAAGAGGAGAAGTTACGGAGTCAGAGGGAAGACTTCAGCGACATGGTTGCAGAGGTTTGATTTTTTTTTATTATTATTATCAAATGAATGAACCAATCAGTTCTATATTCTTTGTCTTTTGGGAAAAAGAAAAGAGGCAGAAAATTTGCTCGTACTTGAACTCGACAGCGATTTCTTTTGTTGATCATATTTTTATGGGGAAAATTTTCTTGCAGAATGAGAAGAAAAGAAAACGTAAGATGCAAGAGAAGGACGGAAAATCTAAGAAGAAGGATTTCAAGTTCTAAATCATCCTTTGTTACGGTACTCAAACCATTCTATCGAATATGACATTCATGCTCGTCATGCTTTTACTTGAAGAAGTTGGCCTTTTCTTTTGGTAGAGAGATGTTCCAATCTTGTGTAGTATCAAGTATGTGCTTATCCCATAAACTTCAGCGTTATGTGGTTCTTTCTAAAACCAGATCCTCTTCACGGGATAATCTACGTAGCTAGTTGTGTACGACTCTTCAGTGGAAGTAGTTTATCATCGTACTCAGTAGGTTTTGTATTCGTTTTTTTCGATTTCCGAGCTTAGAAATGGCTGATATGCTGTAACTTAACTGATTAACAGTAGCTGCGATGGAAGAAGAGTTGGACCATCCACAAATGAGTTCTATGCTCTGTTTTGTCATGGGCTGCTTCGCCTGTTGTACTTGAAACACCACTTGATCCATGAAAAAGCATAAAATGGTGTCAAGAGTTATGGGAGAATTTATTTCTACCCTCACGCCTTGGGAATGCATTCCCATCTCCCCTCCCTCGTTTACCCCTTTTTATTGTTTTGTAATTTATTATCAAGTATTGTATGAGACATAAATTATGGAGATACCAAACAATGGGGATGGTGGGTTTAGTAGCACTAATGAGATGGGTTTGTTTTTAGTTTTGATTATTATTGTTGTTGATAATAATCAGTTTTTCAAATTGGGGTGAGTGTTTTAGTTTCAGAATCCAGCTTTACGGTTGTTAGGCTGGAGAGACAACTGGTTATGGGCCGAACGACGCCAAGTCTTCGGGAGGCAGGCAGGGTCTCAAATTCAATGGAAGGTTAAGACTGGTCACTGACTTCTTCCCATGATATGGTCCTTCAATGCTTCCTCCTACGACTGACTATCTTTTAACTGCGGCTGATTGGTAGAGTCCTTCCATAATATTTATAGACTAAAAGCAAAGTCAAATGTCAACCCGAATGTAATCTCAACTAAAATAATGAGCTAATGGATCTTCATTTTGCCACTGAA

mRNA sequence

GAAGGAGGGGCAATTACGACTTTTCACATTCCCGTTACCCCCCTCTCAAGAACTCCATCACTCTAATGGCGTCCGTTCAATTTCTCTCACTTCAAATTTAGCTATGCAACACACAAACACACAGAAAGATTTTTGAGATTTCCCTTCCACCACCTGCCTGATTGTCTCCCAATATAATTCTAAGAACTCCACCGCTAACTCCGCCTTGCCTCTCGTTTCTGCTCTCACCGGAGAAGTTACAGAAAACCTGCTTTCCGTCTTGCCCTTACTATCCTCGTCCGCCGTGGCCCTGCTGGAAACAGTTGCGTACGCGGTTTCTTCATTGATCGAGTTGTGCGAAGACTGAATCCGAGAATGACTGCGGAGGTTTCTCAGTCGAATGGAGTTGTCTCGAATTGCGACTTGGACCTTAATTCTAACCCTAAATCTGGCGCCGCCAAGAAGTCGCGGGAAAGCGAACGACGTCGTCGTCGGCGAAAGCAGAAGAAGAACCAGAAGACTTCTAAGGTGGAGGCTACTGCTGGAGAGGATAGTGACGCTTCTGGCGACGATACGAAGGAGAACGATAATCCACTGCAGGTTGTTGAGAAAGTAGAAATCGAATATGTACCTGACAAGGCCGAACTGGATGATAGCTTGGATGAAGAATTTAGAAAAGTTTTTGAGAAATTCAGTTTCAGTGAGATAGCTGGTACTGAGGAGAATGAAAACAAAGACGAGTCTGCCCAAAATGCAGCATCTAAGAAGTCAGACTCCGATTCTGATGATGAAGAACTTGATAACCAACAAAAGGAAAAAGGCTTGTCAAACAAGAAAAAGAAGCTGCAACGGCGTATGAAGATTGCAGAGCTGAAGCAGATTTGTTTGAGACCTGATGTTGTTGAGATCTGGGACGCAACTGCAGCTGATCCGAAGTTACTTGTTTATCTAAAATCTTATCGCAACACCGTTCCTGTGCCAAGGCATTGGTGTCAAAAGCGGAAATTTTTACAGGGGAAGCGTGGTATTGAAAAACAACCATTCCAACTTCCAGATTTTATTGCAGCAACAGGAATTGAAAAGATTAGACAGGCCTACATAGAGAAAGAGGATAGTAAAAAATTGAAGCAGAAGCAAAGAGAACGAATGCAGCCAAAGATGGGAAAGATGGATATTGATTATCAGGTTCTTCATGATGCTTTTTTTAAGTACCAAACAAAGCCAAAGCTGACAACTCTTGGAGATCTGTACTATGAAGGGAAAGAATTCGAGGTTAAGTTAAGGGAGATGAAACCAGGCATGCTGTCGCATGAATTGAAAGAAGCGCTTGGCATGCCAGATGGCGCTCCTCCTCCATGGCTCATCAACATGCAGAGATATGGTCCACCTCCATCCTATCCAGATCTAAAAATTCCAGGACTCAATGCTCCCATTCCACCTGGAGCTAGCTTTGGCTATCATCCTGGTGGCTGGGGCAAGCCTCCTGTAGATGAATATGGTCGTCCGCTGTATGGAGATGTTTTTGGTGTTCAGCAGCAAGAACAAGCTAACTATGAGGAGGAACCTGTTGATAAGACCAAACATTGGGGTGATTTGGAAGAAGAGGAAGAAGAAGAGGCGGAGGAGGAGGAGGATGAGGAGGAACTTGAAGAAGAGGAAATGCAAGATGGCATTGAATCTGTGGATAGTCTATCGAGCACCCCTACTGGTGTGGAGACACCTGATGTTATTGACCTTCGGAAACAACAGAGGAAGGAACCGGACAGGCCCCTTTACCAAGTCCTAGAAGCAAAGGAAGAGAAAGTTGCTCCTGGGACTTTGCTTGGAACTACACATACTTATGTTATTAGTGGCGGTACTCAAGATAAGACGGGAGCCAAAAGGGTTGACTTGCTCAGAGGTCAAAAAACTGATAAAGTAGATGTTACTTTACGACCAGAAGAATTGGAAGCTATGGAAAATGTTCTACCTGCGAAGTACGAGGAGGCCAGAGAAGAGGAGAAGTTACGGAGTCAGAGGGAAGACTTCAGCGACATGGTTGCAGAGAATGAGAAGAAAAGAAAACGTAAGATGCAAGAGAAGGACGGAAAATCTAAGAAGAAGGATTTCAAGTTCTAAATCATCCTTTGTTACGTAGCTGCGATGGAAGAAGAGTTGGACCATCCACAAATGAGTTCTATGCTCTGTTTTGTCATGGGCTGCTTCGCCTGTTGTACTTGAAACACCACTTGATCCATGAAAAAGCATAAAATGGTGTCAAGAGTTATGGGAGAATTTATTTCTACCCTCACGCCTTGGGAATGCATTCCCATCTCCCCTCCCTCGTTTACCCCTTTTTATTGTTTTGTAATTTATTATCAAGTATTGTATGAGACATAAATTATGGAGATACCAAACAATGGGGATGGTGGGTTTAGTAGCACTAATGAGATGGGTTTGTTTTTAGTTTTGATTATTATTGTTGTTGATAATAATCAGTTTTTCAAATTGGGGTGAGTGTTTTAGTTTCAGAATCCAGCTTTACGGTTGTTAGGCTGGAGAGACAACTGGTTATGGGCCGAACGACGCCAAGTCTTCGGGAGGCAGGCAGGGTCTCAAATTCAATGGAAGGTTAAGACTGGTCACTGACTTCTTCCCATGATATGGTCCTTCAATGCTTCCTCCTACGACTGACTATCTTTTAACTGCGGCTGATTGGTAGAGTCCTTCCATAATATTTATAGACTAAAAGCAAAGTCAAATGTCAACCCGAATGTAATCTCAACTAAAATAATGAGCTAATGGATCTTCATTTTGCCACTGAA

Coding sequence (CDS)

ATGACTGCGGAGGTTTCTCAGTCGAATGGAGTTGTCTCGAATTGCGACTTGGACCTTAATTCTAACCCTAAATCTGGCGCCGCCAAGAAGTCGCGGGAAAGCGAACGACGTCGTCGTCGGCGAAAGCAGAAGAAGAACCAGAAGACTTCTAAGGTGGAGGCTACTGCTGGAGAGGATAGTGACGCTTCTGGCGACGATACGAAGGAGAACGATAATCCACTGCAGGTTGTTGAGAAAGTAGAAATCGAATATGTACCTGACAAGGCCGAACTGGATGATAGCTTGGATGAAGAATTTAGAAAAGTTTTTGAGAAATTCAGTTTCAGTGAGATAGCTGGTACTGAGGAGAATGAAAACAAAGACGAGTCTGCCCAAAATGCAGCATCTAAGAAGTCAGACTCCGATTCTGATGATGAAGAACTTGATAACCAACAAAAGGAAAAAGGCTTGTCAAACAAGAAAAAGAAGCTGCAACGGCGTATGAAGATTGCAGAGCTGAAGCAGATTTGTTTGAGACCTGATGTTGTTGAGATCTGGGACGCAACTGCAGCTGATCCGAAGTTACTTGTTTATCTAAAATCTTATCGCAACACCGTTCCTGTGCCAAGGCATTGGTGTCAAAAGCGGAAATTTTTACAGGGGAAGCGTGGTATTGAAAAACAACCATTCCAACTTCCAGATTTTATTGCAGCAACAGGAATTGAAAAGATTAGACAGGCCTACATAGAGAAAGAGGATAGTAAAAAATTGAAGCAGAAGCAAAGAGAACGAATGCAGCCAAAGATGGGAAAGATGGATATTGATTATCAGGTTCTTCATGATGCTTTTTTTAAGTACCAAACAAAGCCAAAGCTGACAACTCTTGGAGATCTGTACTATGAAGGGAAAGAATTCGAGGTTAAGTTAAGGGAGATGAAACCAGGCATGCTGTCGCATGAATTGAAAGAAGCGCTTGGCATGCCAGATGGCGCTCCTCCTCCATGGCTCATCAACATGCAGAGATATGGTCCACCTCCATCCTATCCAGATCTAAAAATTCCAGGACTCAATGCTCCCATTCCACCTGGAGCTAGCTTTGGCTATCATCCTGGTGGCTGGGGCAAGCCTCCTGTAGATGAATATGGTCGTCCGCTGTATGGAGATGTTTTTGGTGTTCAGCAGCAAGAACAAGCTAACTATGAGGAGGAACCTGTTGATAAGACCAAACATTGGGGTGATTTGGAAGAAGAGGAAGAAGAAGAGGCGGAGGAGGAGGAGGATGAGGAGGAACTTGAAGAAGAGGAAATGCAAGATGGCATTGAATCTGTGGATAGTCTATCGAGCACCCCTACTGGTGTGGAGACACCTGATGTTATTGACCTTCGGAAACAACAGAGGAAGGAACCGGACAGGCCCCTTTACCAAGTCCTAGAAGCAAAGGAAGAGAAAGTTGCTCCTGGGACTTTGCTTGGAACTACACATACTTATGTTATTAGTGGCGGTACTCAAGATAAGACGGGAGCCAAAAGGGTTGACTTGCTCAGAGGTCAAAAAACTGATAAAGTAGATGTTACTTTACGACCAGAAGAATTGGAAGCTATGGAAAATGTTCTACCTGCGAAGTACGAGGAGGCCAGAGAAGAGGAGAAGTTACGGAGTCAGAGGGAAGACTTCAGCGACATGGTTGCAGAGAATGAGAAGAAAAGAAAACGTAAGATGCAAGAGAAGGACGGAAAATCTAAGAAGAAGGATTTCAAGTTCTAA

Protein sequence

MTAEVSQSNGVVSNCDLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKTSKVEATAGEDSDASGDDTKENDNPLQVVEKVEIEYVPDKAELDDSLDEEFRKVFEKFSFSEIAGTEENENKDESAQNAASKKSDSDSDDEELDNQQKEKGLSNKKKKLQRRMKIAELKQICLRPDVVEIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSHELKEALGMPDGAPPPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQQQEQANYEEEPVDKTKHWGDLEEEEEEEAEEEEDEEELEEEEMQDGIESVDSLSSTPTGVETPDVIDLRKQQRKEPDRPLYQVLEAKEEKVAPGTLLGTTHTYVISGGTQDKTGAKRVDLLRGQKTDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQEKDGKSKKKDFKF

Homology

[Close]

BLAST of CmaCh05G007690 vs. ExPASy Swiss-Prot
Match: Q13435 (Splicing factor 3B subunit 2 OS=Homo sapiens OX=9606 GN=SF3B2 PE=1 SV=2)

HSP 1 Score: 437.2 bits (1123), Expect = 2.9e-121
Identity = 291/591 (49.24%), Postives = 383/591 (64.81%), Query Frame = 0


Query: 27  AAKKSRESERRRRRRKQKKNQKTSKVEATAGEDSDASGDDTKENDNPLQVVEKVEIEYVP 86
           +  K  ++ +RR R+K+KK Q+   V + +  D +     ++ +D+P      VEIEYV 
Sbjct: 317 SVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGSDSP---AADVEIEYVT 376

Query: 87  DKAELDDSLDEEFRKVFEKFSFSEIAGTE---ENENKDESAQNAASKK---------SDS 146
           ++ E+ +     F+++FE F  ++    E   E E  D+   +AA KK         SD 
Sbjct: 377 EEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPKKKGFEEEHKDSDD 436

Query: 147 DSDDEELDNQQKEKGLSNKKKKLQRRMKIAELKQICLRPDVVEIWDATAADPKLLVYLKS 206
           DS D+E + + +   LS KK +   R  +AELKQ+  RPDVVE+ D TA DPKLLV+LK+
Sbjct: 437 DSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKA 496

Query: 207 YRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQ 266
            RN+VPVPRHWC KRK+LQGKRGIEK PF+LPDFI  TGI+++R+A  EKE+ K +K K 
Sbjct: 497 TRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKM 556

Query: 267 RERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSHEL 326
           RE+++PKMGK+DIDYQ LHDAFFK+QTKPKLT  GDLYYEGKEFE +L+E KPG LS EL
Sbjct: 557 REKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDEL 616

Query: 327 KEALGMPDG-----APPPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKP 386
           + +LGMP G      PPPWLI MQRYGPPPSYP+LKIPGLN+PIP   SFGYH GGWGKP
Sbjct: 617 RISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKP 676

Query: 387 PVDEYGRPLYGDVFGVQQQE-QANYEEEPVDKTKHWGDLEEEEEEEAEEEEDEEELEEEE 446
           PVDE G+PLYGDVFG    E Q   EEE +D+T  WG+LE  +EE +EEEE+EE  E++ 
Sbjct: 677 PVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTP-WGELEPSDEESSEEEEEEESDEDKP 736

Query: 447 MQDG-IESVDS-------LSSTPTGVETPDVIDLRKQQRKE----PDRP-LYQVLEAKEE 506
            + G I   DS        SS P G+ETP++I+LRK++ +E     + P L+ VL  K  
Sbjct: 737 DETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSETPQLFTVLPEKRT 796

Query: 507 KVAPGTLLGTTHTYVISGGTQDKTGAKRVDLLRGQKTDKVDVTLRPEELEAMENVLPAKY 566
               G ++G+TH Y +S     K  A     L+G     V+V L PEELE     +  KY
Sbjct: 797 ATVGGAMMGSTHIYDMSTVMSRKGPAPE---LQG-----VEVALAPEELELDPMAMTQKY 856

Query: 567 EEAREEEKLRSQREDFSDMVAEN---EKKRKRKMQEKD---GKSKKKDFKF 581
           EE   E++ + ++EDFSDMVAE+   +K++KRK Q +D   G  K K+FKF
Sbjct: 857 EEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF 895

[Close]

BLAST of CmaCh05G007690 vs. ExPASy Swiss-Prot
Match: Q9UUI3 (Pre-mRNA-splicing factor sap145 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap145 PE=1 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.3e-89
Identity = 250/595 (42.02%), Postives = 343/595 (57.65%), Query Frame = 0


Query: 1   MTAEVSQSNGVVSNCDLDLNSNPKSGAAKKSRESERRRRRR--KQKKN------QKTSKV 60
           + AE+  +   +   +  L  N K    KKSR   RR +++  ++K N      +K S  
Sbjct: 16  LMAEIQTAQNPLKELEKILERNNKQ-KNKKSRNQVRREKKKLLREKTNSGAKLAEKNSDD 75

Query: 61  EATAGEDSDASGDDTKEN-----DNPLQVVEKVEIEYVPDKAELD--DSLDEEFRKVFEK 120
           +    E++D   +D K N      N    V+ +    + D  ELD  D L E+F+ VF +
Sbjct: 76  KDQLTENNDNLYNDKKSNGNFYDTNKTDSVDGMVYTTIVDSVELDPNDPLIEQFKDVFNR 135

Query: 121 FSFSEIAGTEEN-ENKDESAQNAASKKSDSDSDDEELDNQQKEKGLSNKKKKLQRRMKIA 180
           F   +  G E++ E+ D+     +  +  S+ +++ L  QQ+EK LS KK +  +RM +A
Sbjct: 136 F---KADGQEKDFEDTDKGQIMYSDDEILSEGEEDALQKQQEEK-LSKKKLRKLKRMTVA 195

Query: 181 ELKQICLRPDVVEIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQ 240
           +LK +  + DVVE WD ++ DP  L +LK+Y NTVPVPRHW QKR +L G+RGIE+Q F+
Sbjct: 196 QLKMLSEKADVVEWWDVSSLDPLFLTHLKAYPNTVPVPRHWNQKRDYLSGQRGIERQLFE 255

Query: 241 LPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPK 300
           LP +I ATGI ++R A  E E    L+QK RER+QPKMGK+DIDYQ LHDAFF+YQTKP 
Sbjct: 256 LPSYIRATGIVQMRNAVHENEADMPLRQKMRERVQPKMGKLDIDYQKLHDAFFRYQTKPV 315

Query: 301 LTTLGDLYYEGKEFEVKLREMKPGMLSHELKEALGMPDGAPPPWLINMQRYGPPPSYPDL 360
           LT  G+ Y+EGKE E  ++E +PG +S EL+EALG+  GAPPPWL  MQRYGPPPSYPDL
Sbjct: 316 LTGFGECYFEGKELEADVKEKRPGDISEELREALGIAPGAPPPWLFAMQRYGPPPSYPDL 375

Query: 361 KIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQQQEQANYEEEPVDKTKHW 420
           KIPG+N PIP GA +G+HPGGWGKPPVD++ RPLYGDVFG  +         PV  T+HW
Sbjct: 376 KIPGVNCPIPTGAQWGFHPGGWGKPPVDQFNRPLYGDVFGNVKPRIHAGTGSPV-STQHW 435

Query: 421 GDLEEEEEEEAEEEEDEEEL----EEEEMQDGIESVDSLSS----------------TPT 480
           G+LEE EEEE+ EEE+ E++    EE   ++ IE   S S                   +
Sbjct: 436 GELEEFEEEESSEEEESEDVEYPTEEITERETIEEYQSASEPRSQREDLHAEPLTYFNQS 495

Query: 481 GVETPDVIDLRKQQRKEPD---RPLYQVLEAKEEKVAPGTLLGTTHTYVISGGTQDKTGA 540
            VE  D ++LRK  +   D   R LYQVL  K   ++    +G  H Y I    +D    
Sbjct: 496 NVEV-DNVELRKNTQPSSDAANRDLYQVLPEKSTNIS--GFMGPQHQYDIP-TAEDTLPQ 555

Query: 541 KRVDLLRGQKTDKVDVTLR-----PEELEAMENVLPAKYEEAREEEKLRSQREDF 552
           KR        T+K DV L       +EL  + +    K   A+  +K +S+R+ F
Sbjct: 556 KRNAHSMLSSTNKGDVALNQSSNWQDELSELVSEQAMKVGAAK-RQKTQSKRDKF 599

[Close]

BLAST of CmaCh05G007690 vs. ExPASy Swiss-Prot
Match: Q02554 (Cold sensitive U2 snRNA suppressor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CUS1 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.9e-27
Identity = 131/443 (29.57%), Postives = 211/443 (47.63%), Query Frame = 0


Query: 31  SRESERRRRRRKQKKNQKTSKVEATAGEDSDASGDDTKENDNPLQVVEKVEIEYVPDKAE 90
           +R   R+R    Q KN      +A      DA   + K+         K           
Sbjct: 2   ARTKSRKRSGNNQNKNASVVNNKAEIAAMIDARRLEQKKKGGVTNSKGKT-------NKV 61

Query: 91  LDDSLDEEFRKVFEKFSFSEIAGTEENENKDESAQNAA--------SKKSDSDSDDEELD 150
           +D  L++EF+ V ++F   E   T +   KDE   +          ++K  ++ + E+  
Sbjct: 62  VDAKLEKEFKDVLQRFQVQE-NDTPKEITKDEKNNHVVIVEKNPVMNRKHTAEDELEDTP 121

Query: 151 NQQKEKGLSNKKKKLQRRMKIAELKQICLRPDVVEIWDATAADPKLLVYLKSYRNTVPVP 210
           +   E+ LS +K++   +  +++LK     P ++E +D  A  P LL  +K  +N +PVP
Sbjct: 122 SDGIEEHLSARKRRKTEKPSLSQLKSQVPYPQIIEWYDCDARYPGLLASIKCTKNVIPVP 181

Query: 211 RHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIR----QAYIEKEDSKKLKQKQRERM 270
            HW  K+++L G+  + K+PF+LPD I  T IE++R    Q+ ++ +D K LK+  R R+
Sbjct: 182 SHWQSKKEYLSGRSLLGKRPFELPDIIKKTNIEQMRSTLPQSGLDGQDEKSLKEASRARV 241

Query: 271 QPKMGKMDIDYQVLHDAFFKYQTKPK---LTTLGDLYYEGKEF--EVKLREM----KPGM 330
           QPKMG +D+DY+ LHD FFK     K   L   GD+YYE +    E   + M    +PG 
Sbjct: 242 QPKMGALDLDYKKLHDVFFKIGANWKPDHLLCFGDVYYENRNLFEETNWKRMVDHKRPGR 301

Query: 331 LSHELKEALGMPDGAPPPWLINMQRYGPPPSYPDLKIPGLNAPIP--PGASFG-YHPGGW 390
           +S EL+  + +P+G  PPW + M+  G P  YPDLKI GLN  I    G  +G   P   
Sbjct: 302 ISQELRAIMNLPEGQLPPWCMKMKDIGLPTGYPDLKIAGLNWDITNLKGDVYGKIIPNHH 361

Query: 391 GKPPVDEYGRPLYGDVFGVQQQEQANYEEEPV-------------DKTKHWGDLEEEEEE 437
            +    + GR  +G +   +  E  N +E+               D+ +H  D  +E+  
Sbjct: 362 SRS--KKQGRNYFGALISFETPEFENSKEDTQANAENGRQDDKIDDEVEHKLDHFQEDIS 421

[Close]

BLAST of CmaCh05G007690 vs. TAIR 10
Match: AT4G21660.1 (proline-rich spliceosome-associated (PSP) family protein )

HSP 1 Score: 798.1 bits (2060), Expect = 4.6e-231
Identity = 446/589 (75.72%), Postives = 509/589 (86.42%), Query Frame = 0


Query: 1   MTAE--VSQSNGVVSNCDLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKTSKVEATAGE 60
           MTA+  V+  + VVSN D+  N N  S ++KKSRE +RRRRRRKQKKN K S+ +  A +
Sbjct: 1   MTADSTVALVHSVVSNGDVS-NGN-TSASSKKSREIDRRRRRRKQKKNNKASQADVDASD 60

Query: 61  DSDASGDDTKENDNPL-QVVEKVEIEYVPDKAELDDSLDEEFRKVFEKFSFSEIAGTEEN 120
            S AS  ++KEN +P  QV E++ IEYVP++AE +D  ++EF+++FEKF+F E   +EE+
Sbjct: 61  VSAAS--ESKENTDPQPQVCEQIVIEYVPEQAEFEDGFNDEFKEIFEKFNFREPLASEED 120

Query: 121 ENKDESAQNAASKK---SDSDSDDEELDNQQKEKGLSNKKKKLQRRMKIAELKQICLRPD 180
             KDES +    KK   SDSDSDD+E DNQ KEKG+SNKKKKLQRRMKIAELKQ+  RPD
Sbjct: 121 GTKDESEEKEDVKKKVNSDSDSDDDEQDNQNKEKGISNKKKKLQRRMKIAELKQVSARPD 180

Query: 181 VVEIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGI 240
           VVE+WDAT+ADPKLLV+LKSYRNTVPVPRHW QKRK+LQGKRGIEKQPF LPDFIAATGI
Sbjct: 181 VVEVWDATSADPKLLVFLKSYRNTVPVPRHWSQKRKYLQGKRGIEKQPFHLPDFIAATGI 240

Query: 241 EKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTTLGDLYYE 300
           EKIRQAYIEKED KKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKL+ LGDLY+E
Sbjct: 241 EKIRQAYIEKEDGKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLSALGDLYFE 300

Query: 301 GKEFEVKLREMKPGMLSHELKEALGMPDGAPPPWLINMQRYGPPPSYPDLKIPGLNAPIP 360
           GKEFEVKLRE KPG LS++LKEALGMP+GAPPPWLINMQRYGPPPSYP LKIPGLNAPIP
Sbjct: 301 GKEFEVKLRETKPGFLSNDLKEALGMPEGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIP 360

Query: 361 PGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQQQEQANYEEEPVDKTKHWGDLEEEEEEE 420
            GASFG+H GGWGKPPVDEYGRPLYGDVFGVQQQ+Q NYEEEP+DK+KHWGDLEEEEEEE
Sbjct: 361 IGASFGFHAGGWGKPPVDEYGRPLYGDVFGVQQQDQPNYEEEPIDKSKHWGDLEEEEEEE 420

Query: 421 AEEEED-EEELEEEEMQDGIESVDSLSSTPTGVETPDVIDLRKQQRKEPDRPLYQVLEAK 480
            EEEE+ EEE++EEE++DG ESVD+LSSTPTG+ETPD I+LRK QRKEPDR LYQVLE K
Sbjct: 421 EEEEEEQEEEMDEEELEDGTESVDTLSSTPTGIETPDAIELRKDQRKEPDRALYQVLEEK 480

Query: 481 EEKVAPGTLLGTTHTYVISGGTQDKTGAKRVDLLRGQKTDKVDVTLRPEELEAMENVLPA 540
            E VAPGTLLGT+HTYVI  GTQ+KTGAKRVDLLRGQKTD+VDV+L+PEEL+AMENVLPA
Sbjct: 481 GESVAPGTLLGTSHTYVIKTGTQEKTGAKRVDLLRGQKTDRVDVSLQPEELDAMENVLPA 540

Query: 541 KYEEAREEEKLRSQREDFSDMVAEN--EKKRKRKMQEKDGKSKKKDFKF 581
           KYEEAREEEKLR++  D SDMV E+  +  RKRKM +K+GK KKKDFKF
Sbjct: 541 KYEEAREEEKLRNKPVDLSDMVVEHVQQNSRKRKMHDKEGK-KKKDFKF 584

[Close]

BLAST of CmaCh05G007690 vs. TAIR 10
Match: AT4G21660.2 (proline-rich spliceosome-associated (PSP) family protein )

HSP 1 Score: 788.5 bits (2035), Expect = 3.7e-228
Identity = 446/603 (73.96%), Postives = 509/603 (84.41%), Query Frame = 0


Query: 1   MTAE--VSQSNGVVSNCDLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKTSKVEATAGE 60
           MTA+  V+  + VVSN D+  N N  S ++KKSRE +RRRRRRKQKKN K S+ +  A +
Sbjct: 1   MTADSTVALVHSVVSNGDVS-NGN-TSASSKKSREIDRRRRRRKQKKNNKASQADVDASD 60

Query: 61  DSDASGDDTKENDNPL-QVVEKVEIEYVPDKAELDDSLDEEFRKVFEKFSFSEIAGTEEN 120
            S AS  ++KEN +P  QV E++ IEYVP++AE +D  ++EF+++FEKF+F E   +EE+
Sbjct: 61  VSAAS--ESKENTDPQPQVCEQIVIEYVPEQAEFEDGFNDEFKEIFEKFNFREPLASEED 120

Query: 121 ENKDESAQNAASKK---SDSDSDDEELDNQQKEKGLSNKKKKLQRRMKIAELKQICLRPD 180
             KDES +    KK   SDSDSDD+E DNQ KEKG+SNKKKKLQRRMKIAELKQ+  RPD
Sbjct: 121 GTKDESEEKEDVKKKVNSDSDSDDDEQDNQNKEKGISNKKKKLQRRMKIAELKQVSARPD 180

Query: 181 VVEIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ--------------GKRGIEK 240
           VVE+WDAT+ADPKLLV+LKSYRNTVPVPRHW QKRK+LQ              GKRGIEK
Sbjct: 181 VVEVWDATSADPKLLVFLKSYRNTVPVPRHWSQKRKYLQGNYIKRDRNVCDNHGKRGIEK 240

Query: 241 QPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQ 300
           QPF LPDFIAATGIEKIRQAYIEKED KKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQ
Sbjct: 241 QPFHLPDFIAATGIEKIRQAYIEKEDGKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQ 300

Query: 301 TKPKLTTLGDLYYEGKEFEVKLREMKPGMLSHELKEALGMPDGAPPPWLINMQRYGPPPS 360
           TKPKL+ LGDLY+EGKEFEVKLRE KPG LS++LKEALGMP+GAPPPWLINMQRYGPPPS
Sbjct: 301 TKPKLSALGDLYFEGKEFEVKLRETKPGFLSNDLKEALGMPEGAPPPWLINMQRYGPPPS 360

Query: 361 YPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQQQEQANYEEEPVDK 420
           YP LKIPGLNAPIP GASFG+H GGWGKPPVDEYGRPLYGDVFGVQQQ+Q NYEEEP+DK
Sbjct: 361 YPHLKIPGLNAPIPIGASFGFHAGGWGKPPVDEYGRPLYGDVFGVQQQDQPNYEEEPIDK 420

Query: 421 TKHWGDLEEEEEEEAEEEED-EEELEEEEMQDGIESVDSLSSTPTGVETPDVIDLRKQQR 480
           +KHWGDLEEEEEEE EEEE+ EEE++EEE++DG ESVD+LSSTPTG+ETPD I+LRK QR
Sbjct: 421 SKHWGDLEEEEEEEEEEEEEQEEEMDEEELEDGTESVDTLSSTPTGIETPDAIELRKDQR 480

Query: 481 KEPDRPLYQVLEAKEEKVAPGTLLGTTHTYVISGGTQDKTGAKRVDLLRGQKTDKVDVTL 540
           KEPDR LYQVLE K E VAPGTLLGT+HTYVI  GTQ+KTGAKRVDLLRGQKTD+VDV+L
Sbjct: 481 KEPDRALYQVLEEKGESVAPGTLLGTSHTYVIKTGTQEKTGAKRVDLLRGQKTDRVDVSL 540

Query: 541 RPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAEN--EKKRKRKMQEKDGKSKKKD 581
           +PEEL+AMENVLPAKYEEAREEEKLR++  D SDMV E+  +  RKRKM +K+GK KKKD
Sbjct: 541 QPEELDAMENVLPAKYEEAREEEKLRNKPVDLSDMVVEHVQQNSRKRKMHDKEGK-KKKD 598

[Close]

BLAST of CmaCh05G007690 vs. TAIR 10
Match: AT1G11520.1 (pliceosome associated protein-related )

HSP 1 Score: 154.8 bits (390), Expect = 2.1e-37
Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 431 DGIESVDSLSSTPTGVETPDVIDLRKQQRKEPDRPLYQVLEAK-EEKVAPGTLLGTTHTY 490
           D ++   SLSSTPTG+ETPD I+LRK+QRKEPDR LYQVLE K E  VAPGTLL TTHTY
Sbjct: 85  DAMDVSKSLSSTPTGIETPDAIELRKEQRKEPDRALYQVLEEKGESVVAPGTLLRTTHTY 144

Query: 491 VISGGTQDKTGAKRVDLLRGQKTDKVDVTLRPEELEAMENVLPAKYEEAREEEK 544
           VI  GTQDKTG KRVDLLRGQKTD+VD +L+PEEL+AM NVL  +YEEAREEEK
Sbjct: 145 VIKTGTQDKTGTKRVDLLRGQKTDRVDFSLQPEELDAMGNVL--QYEEAREEEK 196

The following BLAST results are available for this feature:

BLAST of CmaCh05G007690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q13435	2.9e-121	49.24	Splicing factor 3B subunit 2 OS=Homo sapiens OX=9606 GN=SF3B2 PE=1 SV=2	[more]
Q9UUI3	1.3e-89	42.02	Pre-mRNA-splicing factor sap145 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q02554	1.9e-27	29.57	Cold sensitive U2 snRNA suppressor 1 OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of CmaCh05G007690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21660.1	4.6e-231	75.72	proline-rich spliceosome-associated (PSP) family protein	[more]
AT4G21660.2	3.7e-228	73.96	proline-rich spliceosome-associated (PSP) family protein	[more]
AT1G11520.1	2.1e-37	75.44	pliceosome associated protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 147..167
None	No IPR available	COILS	Coil	Coil	coord: 405..432
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 393..407
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 534..580
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 408..433
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 452..467
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 391..467
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..90
None	No IPR available	PANTHER	PTHR12785	SPLICING FACTOR 3B	coord: 9..580
None	No IPR available	PANTHER	PTHR12785:SF13	SPLICING FACTOR 3B SUBUNIT 2-LIKE	coord: 9..580
IPR006568	PSP, proline-rich	SMART	SM00581	testneu	coord: 302..355 e-value: 9.1E-27 score: 104.9
IPR006568	PSP, proline-rich	PFAM	PF04046	PSP	coord: 306..351 e-value: 1.1E-21 score: 76.4
IPR007180	Domain of unknown function DUF382	PFAM	PF04037	DUF382	coord: 172..297 e-value: 2.7E-59 score: 198.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G007690.1	CmaCh05G007690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005684	U2-type spliceosomal complex
cellular_component	GO:0005634	nucleus