CmaCh05G007270 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G007270
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionmethyl-CpG-binding domain-containing protein 2-like
LocationCma_Chr05: 4078988 .. 4081550 (+)
RNA-Seq ExpressionCmaCh05G007270
SyntenyCmaCh05G007270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGTGGTGAAGAAAATGACTTGAACGAGCCAAGTTTATCGAACCACCAAGAAACGACCCAGCAAGATGTTATAGCTGTTTCTTCCTCGTCATCCTCTTTCTCGTCTTCTTCCTCTGAAAGCGAGTTACATGAGACTAGGAATGAGAATGTCCAATCTCAATCTAATGAAAACGTCTCTCGTGAACTAGTCCTATACAACCCTTCTGCTAATGATGAAGGAGGTGCACATGAACCTGTATCCACACCTGTTAGGCACCAGCGTCCACCACTTCTTGGACACTTGACCCCAAATTCGTCTAGAGTTTTGCGAGTAGGGGCCTTTACTGTCCAGTGTGCAAGCTGTTTTAAATGGAGGCTCATTCCAACAAAGGAAAAATATGAGGAAATACGAGAACATCTGCTTGAGGAACCTTTTTACTGTGAAACTGCTCGTGAGTGGCGGCCTGATATCTCTTGTAATGATCCTGCTGACATTACTCAAGATGATGGCAGGCTTTGGGCAATTGACAAGCCCAATATAGCACAGCCCCCTCCTGGCTGGCAAAGGCTACTACACATCAGAGGTGAAGGAAGCACCAAGTTTGCTGATGTGTATGTACTTTAAGTTCTTTATTATCACTGCTATGTTTGTGGCTTTTATTGTCTGTACCTGTCTGATATTTTGTTGTTATCAGGTATTATATTGCACCATCAGGTAAGAGGCTTCGTTCCATGGTGGATATCCAGAAGTATGTTGCTGTACATTGTGCTTCTGGCTCTTTAATGTTTGATTAAATTCTTGTAAATGATCTGTGGCCTACATATTGATTTTTTTGTGGCACCCTCTGATGGTTTGTTTGGTTCTGAAGATACCTGATTGAACATCCGGAGTACCAAACCGAAGGTGTTTGTATGACACGGTTTTCATTTCAAACCCCGAAGCCTCTGCAGGAAAATTATGTAAGAAAGCGTCGCGCCAATATGAATGCTTCGTGTGACGGTTCTAAGCTTGAATCTGGTGAAGGTACTCATTTCGTGTTTGTCCCTTTGACCTGTATAGTGCCTTTTGGGGGGTTTGGGTTATAGAGGACAATGATAAACTTTAGATGCTTGAGAGATCTTGGAGCTGGTGTCGTCTTTCGTTAGATTTCACGTCTCTTTGGTCGTATGTTACTAACGTCTTTGGTCGTATGTTACTAACGTCTCTTTGGTGTCGTCTCTTGTTCGATTTAACGTCTGGGCAACTCTTTTTGTTGGGTTTTTTTTTATGCCCTTCAGTGTTTTTGCAGGTTTAGCTTTTCAATCCGCTATTATGCTAGAAACAAACTGGGAGATCCTACATTGGTTGGAGAGAGGAACAAAATATTTTTAAAATATTTTTTATAAGGGCGTGGAAATCTCTCCCTAGCTTTAAAATCTTAAGGGAAAGACAAAAAAAGGCAATATCTACTAGCGGTGGGCTACTAATGGTATCAGAGCTAGACACCAGGAGGTGTGCCAATGTCCGACGAGGACACTGGGCTCCAGAGGGAGGTAGATTGTGTGATCCCACATCGATTGGAGAGGGGGTAGATTGTGAGATCTCACATCGGTTGGAGAGGGGAACAAAACATTCTTTATAAGGGTGCAGAAACCTCTTACTAGCAGACGCATTTTAAAACCTTGAGGGGAAGCCCGGAAGGGAAAACCCAAAGAGGACAATATTAGCGGTGGGTTTGAGCTATTATAAATGGTATCAGAGCCAGACACCGGGCAGTGTATTAACGAGGATATTGAGTATCGAAGGGGGGTGGATTATGAGATCCCACATCGATTAGAGAGAGGAAAGTGCTAGTGAGGACGCTAGGCCCCAAGTAGGGTAGATTGTAAGATCCCACATCGGTTGGAGGGAGGAGCGAAACATTCTTTTGGAATTTGTTTCTTTGAGCATTAGTCTTTTTTTCAATTCTTTTAAAAGAAAACGGAAGATACCACCAATAGTTTCGTCCCATACATCGACCATGTTTATTCGAAAGCTTCAATGTACGGTATGTTAAACAGTAGATTCTCCCTGTTTTGTGCAGTGTATCCAATATCATGGGCTCGTCCAGACAATTCTACTGGATTGCAGCTTGGAAGGCCAGGGCTCTCGGAACTGTTTCCGACTGCACCAGTCGACAATCGGGTCAGTCAACCAGCAAAGAAGGCGAAAAGAGCTGTAACAAAGGAGATGCATAGTTCTCTCGCATCGACCGAACCTCCTGATTTATCGTTAGAACGTTACTTCAATGAATACAAAAAGTAATACTGGTGAGAACAGGTTGGTTCCATCAAAGTGGAAGTGGAGACGTAGCTCAGAAAGATGTCAAATGGAGGAATTTTGGAAAGGAAACTATGACAGAATATGTATATTATCATACCCTTATTGGGTAATTTTGGTCGTCGTGTGTGAGATCGAGATTCGAACCTTTGTACTTCTAGTTTCACTTTCTATACTTCTCTTTCAAACAAATCGACCCTATCCATCTATTTAGTTTCGGTTTGAAAGGAACTCGTAGATTGCTCCGACAATCCTTTTGATGTCATTTCGTTACACGCCC

mRNA sequence

ATGGTTGGTGGTGAAGAAAATGACTTGAACGAGCCAAGTTTATCGAACCACCAAGAAACGACCCAGCAAGATGTTATAGCTGTTTCTTCCTCGTCATCCTCTTTCTCGTCTTCTTCCTCTGAAAGCGAGTTACATGAGACTAGGAATGAGAATGTCCAATCTCAATCTAATGAAAACGTCTCTCGTGAACTAGTCCTATACAACCCTTCTGCTAATGATGAAGGAGGTGCACATGAACCTGTATCCACACCTGTTAGGCACCAGCGTCCACCACTTCTTGGACACTTGACCCCAAATTCGTCTAGAGTTTTGCGAGTAGGGGCCTTTACTGTCCAGTGTGCAAGCTGTTTTAAATGGAGGCTCATTCCAACAAAGGAAAAATATGAGGAAATACGAGAACATCTGCTTGAGGAACCTTTTTACTGTGAAACTGCTCGTGAGTGGCGGCCTGATATCTCTTGTAATGATCCTGCTGACATTACTCAAGATGATGGCAGGCTTTGGGCAATTGACAAGCCCAATATAGCACAGCCCCCTCCTGGCTGGCAAAGGCTACTACACATCAGAGGTGAAGGAAGCACCAAGTTTGCTGATGTGTATTATATTGCACCATCAGGTAAGAGGCTTCGTTCCATGGTGGATATCCAGAAATACCTGATTGAACATCCGGAGTACCAAACCGAAGGTGTTTGTATGACACGGTTTTCATTTCAAACCCCGAAGCCTCTGCAGGAAAATTATGTAAGAAAGCGTCGCGCCAATATGAATGCTTCGTGTGACGGTTCTAAGCTTGAATCTGGTGAAGTGTATCCAATATCATGGGCTCGTCCAGACAATTCTACTGGATTGCAGCTTGGAAGGCCAGGGCTCTCGGAACTGTTTCCGACTGCACCAGTCGACAATCGGGTCAGTCAACCAGCAAAGAAGGCGAAAAGAGCTGTAACAAAGGAGATGCATAGTTCTCTCGCATCGACCGAACCTCCTGATTTATCGTTAGAACGTTACTTCAATGAATACAAAAAGTAATACTGGTGAGAACAGGTTGGTTCCATCAAAGTGGAAGTGGAGACGTAGCTCAGAAAGATGTCAAATGGAGGAATTTTGGAAAGGAAACTATGACAGAATATGTATATTATCATACCCTTATTGGGTAATTTTGGTCGTCGTGTGTGAGATCGAGATTCGAACCTTTGTACTTCTAGTTTCACTTTCTATACTTCTCTTTCAAACAAATCGACCCTATCCATCTATTTAGTTTCGGTTTGAAAGGAACTCGTAGATTGCTCCGACAATCCTTTTGATGTCATTTCGTTACACGCCC

Coding sequence (CDS)

ATGGTTGGTGGTGAAGAAAATGACTTGAACGAGCCAAGTTTATCGAACCACCAAGAAACGACCCAGCAAGATGTTATAGCTGTTTCTTCCTCGTCATCCTCTTTCTCGTCTTCTTCCTCTGAAAGCGAGTTACATGAGACTAGGAATGAGAATGTCCAATCTCAATCTAATGAAAACGTCTCTCGTGAACTAGTCCTATACAACCCTTCTGCTAATGATGAAGGAGGTGCACATGAACCTGTATCCACACCTGTTAGGCACCAGCGTCCACCACTTCTTGGACACTTGACCCCAAATTCGTCTAGAGTTTTGCGAGTAGGGGCCTTTACTGTCCAGTGTGCAAGCTGTTTTAAATGGAGGCTCATTCCAACAAAGGAAAAATATGAGGAAATACGAGAACATCTGCTTGAGGAACCTTTTTACTGTGAAACTGCTCGTGAGTGGCGGCCTGATATCTCTTGTAATGATCCTGCTGACATTACTCAAGATGATGGCAGGCTTTGGGCAATTGACAAGCCCAATATAGCACAGCCCCCTCCTGGCTGGCAAAGGCTACTACACATCAGAGGTGAAGGAAGCACCAAGTTTGCTGATGTGTATTATATTGCACCATCAGGTAAGAGGCTTCGTTCCATGGTGGATATCCAGAAATACCTGATTGAACATCCGGAGTACCAAACCGAAGGTGTTTGTATGACACGGTTTTCATTTCAAACCCCGAAGCCTCTGCAGGAAAATTATGTAAGAAAGCGTCGCGCCAATATGAATGCTTCGTGTGACGGTTCTAAGCTTGAATCTGGTGAAGTGTATCCAATATCATGGGCTCGTCCAGACAATTCTACTGGATTGCAGCTTGGAAGGCCAGGGCTCTCGGAACTGTTTCCGACTGCACCAGTCGACAATCGGGTCAGTCAACCAGCAAAGAAGGCGAAAAGAGCTGTAACAAAGGAGATGCATAGTTCTCTCGCATCGACCGAACCTCCTGATTTATCGTTAGAACGTTACTTCAATGAATACAAAAAGTAA

Protein sequence

MVGGEENDLNEPSLSNHQETTQQDVIAVSSSSSSFSSSSSESELHETRNENVQSQSNENVSRELVLYNPSANDEGGAHEPVSTPVRHQRPPLLGHLTPNSSRVLRVGAFTVQCASCFKWRLIPTKEKYEEIREHLLEEPFYCETAREWRPDISCNDPADITQDDGRLWAIDKPNIAQPPPGWQRLLHIRGEGSTKFADVYYIAPSGKRLRSMVDIQKYLIEHPEYQTEGVCMTRFSFQTPKPLQENYVRKRRANMNASCDGSKLESGEVYPISWARPDNSTGLQLGRPGLSELFPTAPVDNRVSQPAKKAKRAVTKEMHSSLASTEPPDLSLERYFNEYKK
Homology
[Close]
BLAST of CmaCh05G007270 vs. ExPASy Swiss-Prot
Match: Q8LA53 (Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=MBD2 PE=1 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.2e-71
Identity = 146/271 (53.87%), Postives = 185/271 (68.27%), Query Frame = 0 

Query: 47  TRNENVQSQSNENVSR---ELVLYNPSANDEGGAHEPVSTPVRHQRPPLLGHLTPNSSRV 106
           +++  VQ  S+ N  R   +LV+Y+   ND+    E    PV+ Q         P SSR 
Sbjct: 4   SQSRAVQRSSSPNEDRGENQLVVYDLKGNDD---TEEEVLPVQSQ---------PLSSRT 63

Query: 107 L--RVGAFTVQCASCFKWRLIPTKEKYEEIREHLLEEPFYCETAREWRPDISCNDPADIT 166
               +GAFTVQCASCFKWRL+P+ +KYEEIRE LLE PF+C+TAREW+PDISC+ PADI 
Sbjct: 64  QCPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIY 123

Query: 167 QDDGRLWAIDKPNIAQPPPGWQRLLHIRGEGSTKFADVYYIAPSGKRLRSMVDIQKYLIE 226
           QD  RLWAIDKPNI++PP GWQRLL IRGEG T+FADVYY+APSGK+LRS V++QKYL +
Sbjct: 124 QDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLND 183

Query: 227 HPEYQTEGVCMTRFSFQTPKPLQENYVRKRRANMNASCDGSKLE-SGEVYPISWARPDNS 286
           + EY  EGV +++FSFQ PKPLQ++YVRKR A +  S D +    + E  P++W  PD+ 
Sbjct: 184 NSEYIGEGVKLSQFSFQIPKPLQDDYVRKRPARLLDSIDNTNTPVAKEANPLAWISPDDH 243

Query: 287 TGLQLGRPGLSELFPTAPVDNRVSQPAKKAK 312
             LQLG P  S L      +N   QP+KK K
Sbjct: 244 ISLQLGTPTESGL------NNSHYQPSKKKK 256

[Close]
BLAST of CmaCh05G007270 vs. ExPASy Swiss-Prot
Match: Q9FZP6 (Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana OX=3702 GN=MBD12 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.2e-36
Identity = 76/141 (53.90%), Postives = 92/141 (65.25%), Query Frame = 0 

Query: 111 VQCASCFKWRLIPTKEKYEEIREHLLEEPFYCETAREWRPDISCNDPADITQDDGRLWAI 170
           VQC  C KWRLIP+ + Y  I+E  L+ PF C T   W P++SCN P D T  D   W  
Sbjct: 2   VQCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQDGTTCD--TW-- 61

Query: 171 DKPNIAQPPPGWQRLLHIRGEGSTKFADVYYIAPSGKRLRSMVDIQKYLIEHPEYQTEGV 230
             P+I   P GW R +HIR E STKFADVYY  PSG+RLRS  ++Q +L  HPEY  EGV
Sbjct: 62  --PSIPPIPTGWSRSVHIRSE-STKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGV 121

Query: 231 CMTRFSFQTPKPLQENYVRKR 252
             ++FSFQ PKPL +NYV+KR
Sbjct: 122 NRSQFSFQIPKPLDDNYVKKR 135

[Close]
BLAST of CmaCh05G007270 vs. ExPASy Swiss-Prot
Match: Q9LYB9 (Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=MBD4 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.4e-24
Identity = 52/140 (37.14%), Postives = 85/140 (60.71%), Query Frame = 0 

Query: 106 VGAFTVQCASCFKWRLIPTKEKYEEIREHLLEEPFYCETAREWRPDISCNDPADITQDDG 165
           +  +  QC +C KWR+I ++E+YE+IR  +LE+PF C+     +  +SC +PADI  D  
Sbjct: 25  IDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQK----KQGMSCEEPADIDYDSS 84

Query: 166 RLWAIDKPNIAQPPPGWQRLLHIRGEGSTKFADVYYIAPSGKRLRSMVDIQKYLIEHPEY 225
           R W IDKP + + P G++R L +R + S    D YY  P+GK+LRS  +I  ++  +PE+
Sbjct: 85  RTWVIDKPGLPKTPKGFKRSLVLRKDYSK--MDTYYFTPTGKKLRSRNEIAAFVEANPEF 144

Query: 226 QTEGVCMTRFSFQTPKPLQE 246
           +     +  F+F  PK +++
Sbjct: 145 R--NAPLGDFNFTVPKVMED 156

[Close]
BLAST of CmaCh05G007270 vs. ExPASy Swiss-Prot
Match: Q5XEN5 (Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=MBD1 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.3e-23
Identity = 52/140 (37.14%), Postives = 83/140 (59.29%), Query Frame = 0 

Query: 106 VGAFTVQCASCFKWRLIPTKEKYEEIREHLLEEPFYCETAREWRPDISCNDPADITQDDG 165
           +  F VQC  C KWR I T+++YE+IR  + E+PF+C+T    +  +SC D  D+  D  
Sbjct: 52  IDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKT----KEGVSCEDVGDLNYDSS 111

Query: 166 RLWAIDKPNIAQPPPGWQRLLHIRGEGSTKFADVYYIAPSGKRLRSMVDIQKYLIEHPEY 225
           R W IDKP + + P G++R L +R + S    D YYI P+GK+L+S  +I  ++  + +Y
Sbjct: 112 RTWVIDKPGLPRTPRGFKRSLILRKDYSK--MDAYYITPTGKKLKSRNEIAAFIDANQDY 171

Query: 226 QTEGVCMTRFSFQTPKPLQE 246
           +     +  F+F  PK ++E
Sbjct: 172 KY--ALLGDFNFTVPKVMEE 183

[Close]
BLAST of CmaCh05G007270 vs. ExPASy Swiss-Prot
Match: Q9Z2E1 (Methyl-CpG-binding domain protein 2 OS=Mus musculus OX=10090 GN=Mbd2 PE=2 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 5.9e-05
Identity = 31/83 (37.35%), Postives = 43/83 (51.81%), Query Frame = 0 

Query: 179 PPGWQRLLHIRGEG-STKFADVYYIAPSGKRLRSMVDIQKYLIEHPEYQTEGVCMTRFSF 238
           PPGW++   IR  G S   +DVYY +PSGK+ RS   + +YL          V ++ F F
Sbjct: 159 PPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYL-------GNAVDLSSFDF 218

Query: 239 QT----PKPLQENYVRKRRANMN 257
           +T    P  LQ+N  R R   +N
Sbjct: 219 RTGKMMPSKLQKNKQRLRNDPLN 234

[Close]
BLAST of CmaCh05G007270 vs. TAIR 10
Match: AT5G35330.1 (methyl-CPG-binding domain protein 02 )

HSP 1 Score: 271.6 bits (693), Expect = 8.9e-73
Identity = 146/271 (53.87%), Postives = 185/271 (68.27%), Query Frame = 0 

Query: 47  TRNENVQSQSNENVSR---ELVLYNPSANDEGGAHEPVSTPVRHQRPPLLGHLTPNSSRV 106
           +++  VQ  S+ N  R   +LV+Y+   ND+    E    PV+ Q         P SSR 
Sbjct: 4   SQSRAVQRSSSPNEDRGENQLVVYDLKGNDD---TEEEVLPVQSQ---------PLSSRT 63

Query: 107 L--RVGAFTVQCASCFKWRLIPTKEKYEEIREHLLEEPFYCETAREWRPDISCNDPADIT 166
               +GAFTVQCASCFKWRL+P+ +KYEEIRE LLE PF+C+TAREW+PDISC+ PADI 
Sbjct: 64  QCPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIY 123

Query: 167 QDDGRLWAIDKPNIAQPPPGWQRLLHIRGEGSTKFADVYYIAPSGKRLRSMVDIQKYLIE 226
           QD  RLWAIDKPNI++PP GWQRLL IRGEG T+FADVYY+APSGK+LRS V++QKYL +
Sbjct: 124 QDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLND 183

Query: 227 HPEYQTEGVCMTRFSFQTPKPLQENYVRKRRANMNASCDGSKLE-SGEVYPISWARPDNS 286
           + EY  EGV +++FSFQ PKPLQ++YVRKR A +  S D +    + E  P++W  PD+ 
Sbjct: 184 NSEYIGEGVKLSQFSFQIPKPLQDDYVRKRPARLLDSIDNTNTPVAKEANPLAWISPDDH 243

Query: 287 TGLQLGRPGLSELFPTAPVDNRVSQPAKKAK 312
             LQLG P  S L      +N   QP+KK K
Sbjct: 244 ISLQLGTPTESGL------NNSHYQPSKKKK 256

[Close]
BLAST of CmaCh05G007270 vs. TAIR 10
Match: AT5G35330.2 (methyl-CPG-binding domain protein 02 )

HSP 1 Score: 271.6 bits (693), Expect = 8.9e-73
Identity = 146/271 (53.87%), Postives = 185/271 (68.27%), Query Frame = 0 

Query: 47  TRNENVQSQSNENVSR---ELVLYNPSANDEGGAHEPVSTPVRHQRPPLLGHLTPNSSRV 106
           +++  VQ  S+ N  R   +LV+Y+   ND+    E    PV+ Q         P SSR 
Sbjct: 4   SQSRAVQRSSSPNEDRGENQLVVYDLKGNDD---TEEEVLPVQSQ---------PLSSRT 63

Query: 107 L--RVGAFTVQCASCFKWRLIPTKEKYEEIREHLLEEPFYCETAREWRPDISCNDPADIT 166
               +GAFTVQCASCFKWRL+P+ +KYEEIRE LLE PF+C+TAREW+PDISC+ PADI 
Sbjct: 64  QCPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIY 123

Query: 167 QDDGRLWAIDKPNIAQPPPGWQRLLHIRGEGSTKFADVYYIAPSGKRLRSMVDIQKYLIE 226
           QD  RLWAIDKPNI++PP GWQRLL IRGEG T+FADVYY+APSGK+LRS V++QKYL +
Sbjct: 124 QDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLND 183

Query: 227 HPEYQTEGVCMTRFSFQTPKPLQENYVRKRRANMNASCDGSKLE-SGEVYPISWARPDNS 286
           + EY  EGV +++FSFQ PKPLQ++YVRKR A +  S D +    + E  P++W  PD+ 
Sbjct: 184 NSEYIGEGVKLSQFSFQIPKPLQDDYVRKRPARLLDSIDNTNTPVAKEANPLAWISPDDH 243

Query: 287 TGLQLGRPGLSELFPTAPVDNRVSQPAKKAK 312
             LQLG P  S L      +N   QP+KK K
Sbjct: 244 ISLQLGTPTESGL------NNSHYQPSKKKK 256

[Close]
BLAST of CmaCh05G007270 vs. TAIR 10
Match: AT5G35330.3 (methyl-CPG-binding domain protein 02 )

HSP 1 Score: 271.6 bits (693), Expect = 8.9e-73
Identity = 146/271 (53.87%), Postives = 185/271 (68.27%), Query Frame = 0 

Query: 47  TRNENVQSQSNENVSR---ELVLYNPSANDEGGAHEPVSTPVRHQRPPLLGHLTPNSSRV 106
           +++  VQ  S+ N  R   +LV+Y+   ND+    E    PV+ Q         P SSR 
Sbjct: 4   SQSRAVQRSSSPNEDRGENQLVVYDLKGNDD---TEEEVLPVQSQ---------PLSSRT 63

Query: 107 L--RVGAFTVQCASCFKWRLIPTKEKYEEIREHLLEEPFYCETAREWRPDISCNDPADIT 166
               +GAFTVQCASCFKWRL+P+ +KYEEIRE LLE PF+C+TAREW+PDISC+ PADI 
Sbjct: 64  QCPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIY 123

Query: 167 QDDGRLWAIDKPNIAQPPPGWQRLLHIRGEGSTKFADVYYIAPSGKRLRSMVDIQKYLIE 226
           QD  RLWAIDKPNI++PP GWQRLL IRGEG T+FADVYY+APSGK+LRS V++QKYL +
Sbjct: 124 QDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLND 183

Query: 227 HPEYQTEGVCMTRFSFQTPKPLQENYVRKRRANMNASCDGSKLE-SGEVYPISWARPDNS 286
           + EY  EGV +++FSFQ PKPLQ++YVRKR A +  S D +    + E  P++W  PD+ 
Sbjct: 184 NSEYIGEGVKLSQFSFQIPKPLQDDYVRKRPARLLDSIDNTNTPVAKEANPLAWISPDDH 243

Query: 287 TGLQLGRPGLSELFPTAPVDNRVSQPAKKAK 312
             LQLG P  S L      +N   QP+KK K
Sbjct: 244 ISLQLGTPTESGL------NNSHYQPSKKKK 256

[Close]
BLAST of CmaCh05G007270 vs. TAIR 10
Match: AT5G35338.2 (methyl-CPG-binding domain 12 )

HSP 1 Score: 154.5 bits (389), Expect = 1.6e-37
Identity = 76/141 (53.90%), Postives = 92/141 (65.25%), Query Frame = 0 

Query: 111 VQCASCFKWRLIPTKEKYEEIREHLLEEPFYCETAREWRPDISCNDPADITQDDGRLWAI 170
           VQC  C KWRLIP+ + Y  I+E  L+ PF C T   W P++SCN P D T  D   W  
Sbjct: 2   VQCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQDGTTCD--TW-- 61

Query: 171 DKPNIAQPPPGWQRLLHIRGEGSTKFADVYYIAPSGKRLRSMVDIQKYLIEHPEYQTEGV 230
             P+I   P GW R +HIR E STKFADVYY  PSG+RLRS  ++Q +L  HPEY  EGV
Sbjct: 62  --PSIPPIPTGWSRSVHIRSE-STKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGV 121

Query: 231 CMTRFSFQTPKPLQENYVRKR 252
             ++FSFQ PKPL +NYV+KR
Sbjct: 122 NRSQFSFQIPKPLDDNYVKKR 135

[Close]
BLAST of CmaCh05G007270 vs. TAIR 10
Match: AT3G63030.1 (methyl-CPG-binding domain 4 )

HSP 1 Score: 112.8 bits (281), Expect = 5.3e-25
Identity = 52/140 (37.14%), Postives = 85/140 (60.71%), Query Frame = 0 

Query: 106 VGAFTVQCASCFKWRLIPTKEKYEEIREHLLEEPFYCETAREWRPDISCNDPADITQDDG 165
           +  +  QC +C KWR+I ++E+YE+IR  +LE+PF C+     +  +SC +PADI  D  
Sbjct: 25  IDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQK----KQGMSCEEPADIDYDSS 84

Query: 166 RLWAIDKPNIAQPPPGWQRLLHIRGEGSTKFADVYYIAPSGKRLRSMVDIQKYLIEHPEY 225
           R W IDKP + + P G++R L +R + S    D YY  P+GK+LRS  +I  ++  +PE+
Sbjct: 85  RTWVIDKPGLPKTPKGFKRSLVLRKDYSK--MDTYYFTPTGKKLRSRNEIAAFVEANPEF 144

Query: 226 QTEGVCMTRFSFQTPKPLQE 246
           +     +  F+F  PK +++
Sbjct: 145 R--NAPLGDFNFTVPKVMED 156

The following BLAST results are available for this feature:
BLAST of CmaCh05G007270 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LA531.2e-7153.87Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 G... [more]
Q9FZP62.2e-3653.90Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q9LYB97.4e-2437.14Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 G... [more]
Q5XEN51.3e-2337.14Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 G... [more]
Q9Z2E15.9e-0537.35Methyl-CpG-binding domain protein 2 OS=Mus musculus OX=10090 GN=Mbd2 PE=2 SV=2[more]
BLAST of CmaCh05G007270 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G35330.18.9e-7353.87methyl-CPG-binding domain protein 02 [more]
AT5G35330.28.9e-7353.87methyl-CPG-binding domain protein 02 [more]
AT5G35330.38.9e-7353.87methyl-CPG-binding domain protein 02 [more]
AT5G35338.21.6e-3753.90methyl-CPG-binding domain 12 [more]
AT3G63030.15.3e-2537.14methyl-CPG-binding domain 4 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001739Methyl-CpG DNA bindingSMARTSM00391TAM_2coord: 172..249
e-value: 3.6E-8
score: 43.1
IPR001739Methyl-CpG DNA bindingPFAMPF01429MBDcoord: 179..240
e-value: 1.6E-10
score: 40.5
IPR001739Methyl-CpG DNA bindingPROSITEPS50982MBDcoord: 168..242
score: 17.255947
NoneNo IPR availableGENE3D3.30.40.100coord: 107..159
e-value: 1.6E-6
score: 29.5
NoneNo IPR availableGENE3D3.30.890.10coord: 160..267
e-value: 2.9E-19
score: 71.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 294..329
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..66
NoneNo IPR availablePANTHERPTHR12396:SF45OS06G0702100 PROTEINcoord: 21..288
NoneNo IPR availablePANTHERPTHR12396METHYL-CPG BINDING PROTEIN, MBDcoord: 21..288
NoneNo IPR availableCDDcd01396MeCP2_MBDcoord: 172..251
e-value: 4.43895E-26
score: 97.4432
IPR011124Zinc finger, CW-typePFAMPF07496zf-CWcoord: 109..159
e-value: 1.6E-12
score: 47.2
IPR011124Zinc finger, CW-typePROSITEPS51050ZF_CWcoord: 103..162
score: 12.520239
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 147..252

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G007270.1CmaCh05G007270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding