CmaCh05G006790 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G006790
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	zinc finger protein CONSTANS-LIKE 5-like
Location	Cma_Chr05: 3501656 .. 3502954 (+)
RNA-Seq Expression	CmaCh05G006790
Synteny	CmaCh05G006790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACATTTCCATTTCCCCTTCATCATTTTACACACCAATTTCTCATTATGCAATCCTTCGCCGGCGGCTGGGCTGCCGTCGCCACCGCCAAACCCCTCTGCTACTCCTGCAAGTCTGCACCCGCTGCCCTCTTCTGCCGCCACGACGCTGCTTTCCTCTGCCTTCGCTGCGACGCCCAAATCCACTCCCACACCACCGGCACGCGCCACCCACGTGTCTGGCTCTGTGAGGTCTGCGAGCAAGCTCCAGCCACCATCACCTGCAATGCCGACGCCGCCGCTCTCTGTCCCTCTTGCGATGCCGACATCCACTCTGTTAACCCCCTTGCTCGCCGCCACGATCGCTCTGCTATCCAACCCTTCTACGACTCACCCCCTTCCGCCTCCGTTGCCTCTGTCTTCAAATTTCTCCTCCCGACTCAACACCAACACGATGTCGGTCACCCTGATTTGAAATCCGAGGATATCTTCTTCTCCGATATGGATTCGTTGATCGATTTCGATTACCCAACTGCCGGCGACGGAGTTGTGCCTGATCAATCAAATCCCGGAACAGAGTCCACTACGCAACCCGCCGATTACTCCACCGGAAACTTCTGCGGTTTCGAGCTCTGTAGTACTCGATCTAAACTCGACGCCATTAGCTACCCATCTCATAATCTTAGCCATAGCGTAATTTTCTCGCAAACCCATTTCTTTTTTATTTTTTTAAAAAAAACAAAAAACTTGCCCAATTAATTTGCTCTGTTTTCGTCTCTGCTGCTCTGTTTTACTCTGCTTTGCTCTGTTCCGTCTCAGGTCTCGTCGTCTTCCTTAGACGTGGTTGCTGTGCCAGATCGGAACACGGCCTCCGACGCGTCGTATCCAGCAGGACAGACAGCGCTTCCTACGACGGAGAAGGCGGTCCAATTACGGGGAATGGATCGGGAGGCGAGGGTGTTGAGGTACAGAGAGAAGAAGAAAAATCGGAAATTTGAGAAGACGATTCGGTATGCTTCAAGGAAAGCTTATGCGGAAATTCGGCCAAGGGTTAAAGGGCGGTTCATTAAACGGAGTGAAATGAAGTCGGAAATGGAGAGAATGTACGCCGGAGCCGGCGTGGGGTACATGTCAAGGGACGGCCAATACGGCGTCGTCCCAAGCCTTATAGTTTGAGTGCGAGGAGTGGGGCCTGTGAGGGGAATTTGAGAGATCCTGTGTGTTGGTTTTTTAGCCTTCAGGATCTGATTTGGAATATAATTCCAATGTAATTTCAAATAATTTTCAATTCAAAGTCCAATAAAAATAATTGTTTAAAGGA

mRNA sequence

ACACATTTCCATTTCCCCTTCATCATTTTACACACCAATTTCTCATTATGCAATCCTTCGCCGGCGGCTGGGCTGCCGTCGCCACCGCCAAACCCCTCTGCTACTCCTGCAAGTCTGCACCCGCTGCCCTCTTCTGCCGCCACGACGCTGCTTTCCTCTGCCTTCGCTGCGACGCCCAAATCCACTCCCACACCACCGGCACGCGCCACCCACGTGTCTGGCTCTGTGAGGTCTGCGAGCAAGCTCCAGCCACCATCACCTGCAATGCCGACGCCGCCGCTCTCTGTCCCTCTTGCGATGCCGACATCCACTCTGTTAACCCCCTTGCTCGCCGCCACGATCGCTCTGCTATCCAACCCTTCTACGACTCACCCCCTTCCGCCTCCGTTGCCTCTGTCTTCAAATTTCTCCTCCCGACTCAACACCAACACGATGTCGGTCACCCTGATTTGAAATCCGAGGATATCTTCTTCTCCGATATGGATTCGTTGATCGATTTCGATTACCCAACTGCCGGCGACGGAGTTGTGCCTGATCAATCAAATCCCGGAACAGAGTCCACTACGCAACCCGCCGATTACTCCACCGGAAACTTCTGCGGTTTCGAGCTCTGTAGTACTCGATCTAAACTCGACGCCATTAGCTACCCATCTCATAATCTTAGCCATAGCGTCTCGTCGTCTTCCTTAGACGTGGTTGCTGTGCCAGATCGGAACACGGCCTCCGACGCGTCGTATCCAGCAGGACAGACAGCGCTTCCTACGACGGAGAAGGCGGTCCAATTACGGGGAATGGATCGGGAGGCGAGGGTGTTGAGGTACAGAGAGAAGAAGAAAAATCGGAAATTTGAGAAGACGATTCGGTATGCTTCAAGGAAAGCTTATGCGGAAATTCGGCCAAGGGTTAAAGGGCGGTTCATTAAACGGAGTGAAATGAAGTCGGAAATGGAGAGAATGTACGCCGGAGCCGGCGTGGGGTACATGTCAAGGGACGGCCAATACGGCGTCGTCCCAAGCCTTATAGTTTGAGTGCGAGGAGTGGGGCCTGTGAGGGGAATTTGAGAGATCCTGTGTGTTGGTTTTTTAGCCTTCAGGATCTGATTTGGAATATAATTCCAATGTAATTTCAAATAATTTTCAATTCAAAGTCCAATAAAAATAATTGTTTAAAGGA

Coding sequence (CDS)

ATGCAATCCTTCGCCGGCGGCTGGGCTGCCGTCGCCACCGCCAAACCCCTCTGCTACTCCTGCAAGTCTGCACCCGCTGCCCTCTTCTGCCGCCACGACGCTGCTTTCCTCTGCCTTCGCTGCGACGCCCAAATCCACTCCCACACCACCGGCACGCGCCACCCACGTGTCTGGCTCTGTGAGGTCTGCGAGCAAGCTCCAGCCACCATCACCTGCAATGCCGACGCCGCCGCTCTCTGTCCCTCTTGCGATGCCGACATCCACTCTGTTAACCCCCTTGCTCGCCGCCACGATCGCTCTGCTATCCAACCCTTCTACGACTCACCCCCTTCCGCCTCCGTTGCCTCTGTCTTCAAATTTCTCCTCCCGACTCAACACCAACACGATGTCGGTCACCCTGATTTGAAATCCGAGGATATCTTCTTCTCCGATATGGATTCGTTGATCGATTTCGATTACCCAACTGCCGGCGACGGAGTTGTGCCTGATCAATCAAATCCCGGAACAGAGTCCACTACGCAACCCGCCGATTACTCCACCGGAAACTTCTGCGGTTTCGAGCTCTGTAGTACTCGATCTAAACTCGACGCCATTAGCTACCCATCTCATAATCTTAGCCATAGCGTCTCGTCGTCTTCCTTAGACGTGGTTGCTGTGCCAGATCGGAACACGGCCTCCGACGCGTCGTATCCAGCAGGACAGACAGCGCTTCCTACGACGGAGAAGGCGGTCCAATTACGGGGAATGGATCGGGAGGCGAGGGTGTTGAGGTACAGAGAGAAGAAGAAAAATCGGAAATTTGAGAAGACGATTCGGTATGCTTCAAGGAAAGCTTATGCGGAAATTCGGCCAAGGGTTAAAGGGCGGTTCATTAAACGGAGTGAAATGAAGTCGGAAATGGAGAGAATGTACGCCGGAGCCGGCGTGGGGTACATGTCAAGGGACGGCCAATACGGCGTCGTCCCAAGCCTTATAGTTTGA

Protein sequence

MQSFAGGWAAVATAKPLCYSCKSAPAALFCRHDAAFLCLRCDAQIHSHTTGTRHPRVWLCEVCEQAPATITCNADAAALCPSCDADIHSVNPLARRHDRSAIQPFYDSPPSASVASVFKFLLPTQHQHDVGHPDLKSEDIFFSDMDSLIDFDYPTAGDGVVPDQSNPGTESTTQPADYSTGNFCGFELCSTRSKLDAISYPSHNLSHSVSSSSLDVVAVPDRNTASDASYPAGQTALPTTEKAVQLRGMDREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRVKGRFIKRSEMKSEMERMYAGAGVGYMSRDGQYGVVPSLIV

Homology

[Close]

BLAST of CmaCh05G006790 vs. ExPASy Swiss-Prot
Match: Q9FHH8 (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2 SV=2)

HSP 1 Score: 269.6 bits (688), Expect = 4.5e-71
Identity = 171/368 (46.47%), Postives = 219/368 (59.51%), Query Frame = 0


Query: 1   MQSFAGGWAAVATAKPLCYSCKSAPAALFCRHDAAFLCLRCDAQIHSHTTGTRHPRVWLC 60
           ++S +GGW A A +   C +CKS  AA+FCR D+AFLC+ CD +IHS    TRH RVW+C
Sbjct: 8   IKSISGGWGAAARS---CDACKSVTAAVFCRVDSAFLCIACDTRIHSF---TRHERVWVC 67

Query: 61  EVCEQAPATITCNADAAALCPSCDADIHSVNPLARRHDRSAIQPFYDSPPSA----SVAS 120
           EVCEQAPA +TC ADAAALC SCDADIHS NPLA RH+R  ++ F+DS  +A    S +S
Sbjct: 68  EVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISASS 127

Query: 121 VF------------------------KFLLPTQHQH----DVGHPDLK-SEDIFFSDMDS 180
            F                         +LLP         ++G  ++K S D  FSD D 
Sbjct: 128 TFGILGSSTTVDLTAVPVMADDLGLCPWLLPNDFNEPAKIEIGTENMKGSSDFMFSDFDR 187

Query: 181 LIDFDYPTA---------GDGVVPDQSNPGTESTTQPADYSTGNFCGFELCSTRSKLDAI 240
           LIDF++P +         GD +VP Q+       T+P   +  + C F++   RSKL A 
Sbjct: 188 LIDFEFPNSFNHHQNNAGGDSLVPVQTK------TEPLPLTNNDHC-FDIDFCRSKLSAF 247

Query: 241 SYPSHNLSHSVSSSSLDVVAVPDRNTASDASYPAGQTALPTTEKAVQLRGMDREARVLRY 300
           +YPS ++SHSVS+SS++   VPD NT  + S         TT    Q   MDREARVLRY
Sbjct: 248 TYPSQSVSHSVSTSSIEYGVVPDGNT--NNSVNRSTITSSTTGGDHQASSMDREARVLRY 307

Query: 301 REKKKNRKFEKTIRYASRKAYAEIRPRVKGRFIKRSEMKSE---MERMYAGAGVGYMSRD 324
           REK+KNRKFEKTIRYASRKAYAE RPR+KGRF KR+E +++   +  +YA A        
Sbjct: 308 REKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETENDDIFLSHVYASAA------H 354

[Close]

BLAST of CmaCh05G006790 vs. ExPASy Swiss-Prot
Match: Q940T9 (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2)

HSP 1 Score: 230.7 bits (587), Expect = 2.3e-59
Identity = 151/366 (41.26%), Postives = 200/366 (54.64%), Query Frame = 0


Query: 14  AKPLCYSCKSAPAALFCRHDAAFLCLRCDAQIH-SHTTGTRHPRVWLCEVCEQAPATITC 73
           A  LC SCKSA AAL+CR DAAFLCL CD+++H ++   +RH RVW+CEVCEQAPA +TC
Sbjct: 2   ASKLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTC 61

Query: 74  NADAAALCPSCDADIHSVNPLARRHDRSAIQPFYDS------------------------ 133
            ADAAALC +CD DIHS NPLARRH+R  + PFYDS                        
Sbjct: 62  KADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCYFSDID 121

Query: 134 --------------------PPSASVASVFKFLLPTQHQHDVGHPDLKS-EDIFFSDMDS 193
                               P + + A+     + +  +     P++ + +   FSD D 
Sbjct: 122 GNGSREEEEEEAASWLLLPNPKTTTTATAGIVAVTSAEEVPGDSPEMNTGQQYLFSDPDP 181

Query: 194 LIDFDYPTAGDGVVP-DQSNPGTEST----TQPADYSTGNFCGFELCSTRSKLDAISYPS 253
            +D DY      V   +Q++ GT+       +     T N   FE+  T           
Sbjct: 182 YLDLDYGNVDPKVESLEQNSSGTDGVVPVENRTVRIPTVNENCFEMDFTGGSKGFTYGGG 241

Query: 254 HN-LSHSVSSSSLDVVAVPDRNTASDASYPAGQTAL----PTTEKAVQLRGMDREARVLR 313
           +N +SHSVSSSS++V  VPD  + +D SYP G  A     P T++AV L   +REARV+R
Sbjct: 242 YNCISHSVSSSSMEVGVVPDGGSVADVSYPYGGPATSGADPGTQRAVPLTSAEREARVMR 301

Query: 314 YREKKKNRKFEKTIRYASRKAYAEIRPRVKGRFIKRSEMKSEMERMYAGAGVGYMSRDGQ 324
           YREK+KNRKFEKTIRYASRKAYAE+RPR+KGRF KR++     +       VG+      
Sbjct: 302 YREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNESND------VVGHGGIFSG 361

[Close]

BLAST of CmaCh05G006790 vs. ExPASy Swiss-Prot
Match: Q9SK53 (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 3.5e-55
Identity = 149/331 (45.02%), Postives = 193/331 (58.31%), Query Frame = 0


Query: 11  VATAKPLCYSCKSAPAALFCRHDAAFLCLRCDAQIH-SHTTGTRHPRVWLCEVCEQAPAT 70
           +A++  LC SCKS  A LFCR DAAFLC  CD +IH ++   +RH RVWLCEVCEQAPA 
Sbjct: 1   MASSSRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAH 60

Query: 71  ITCNADAAALCPSCDADIHSVNPLARRHDRSAIQPFYDS-PPSASVASVFKFLLPTQHQH 130
           +TC ADAAALC +CD DIHS NPL+RRH+R  I PFYD+  P+ S +S   F+       
Sbjct: 61  VTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFV-----DE 120

Query: 131 DVGHPD----LKSEDIFFSDMDSLIDFDYP----------TAGDGVVPDQSNPGTESTTQ 190
           D G       L  E I  +++ S  D DYP          +  DGVVP Q+         
Sbjct: 121 DGGDVTASWLLAKEGIEITNLFS--DLDYPKIEVTSEENSSGNDGVVPVQNKL------- 180

Query: 191 PADYSTGNFCGFELCSTRSKLDAISYPSHNLSHSVSSSSLDVVAVPDRNTASDASYPAGQ 250
              +   ++  F+L +++      ++    ++ +VS+ ++DV  VP+           G 
Sbjct: 181 ---FLNEDYFNFDLSASKISQQGFNF----INQTVSTRTIDVPLVPE---------SGGV 240

Query: 251 TALPTTEK--AVQLRGMDREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRVKGRFIK 310
           TA  T  +  AVQL   +REARVLRYREK+KNRKFEKTIRYASRKAYAE+RPR+KGRF K
Sbjct: 241 TAEMTNTETPAVQLSPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAK 293

Query: 311 RSEMKSEMERMYAGAGVGYMSRDGQYGVVPS 324
           R++      R   G  VG     G +GVVPS
Sbjct: 301 RTD-----SRENDGGDVGVY---GGFGVVPS 293

[Close]

BLAST of CmaCh05G006790 vs. ExPASy Swiss-Prot
Match: Q96502 (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=COL2 PE=1 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.1e-48
Identity = 144/355 (40.56%), Postives = 190/355 (53.52%), Query Frame = 0


Query: 5   AGGWAAVATAKPLCYSCKSAPAALFCRHDAAFLCLRCDAQIH-SHTTGTRHPRVWLCEVC 64
           +G WA        C +C+SA   ++C  D+A+LC  CDA++H ++   +RH RV +C+ C
Sbjct: 9   SGTWARA------CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSC 68

Query: 65  EQAPATITCNADAAALCPSCDADIHSVNPLARRHDRSAIQPFYDSPPSASVAS------- 124
           E APA   C ADAA+LC +CDA+IHS NPLARRH R  I P   +  S+   S       
Sbjct: 69  ESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSMAPSETDADND 128

Query: 125 -----VFKFLLPTQHQH----------DVGHPDL----KSEDIFFSDMDSLIDFDYPTAG 184
                V  +LLP   ++           V + DL     S D  F D +    +     G
Sbjct: 129 EDDREVASWLLPNPGKNIGNQNNGFLFGVEYLDLVDYSSSMDNQFED-NQYTHYQRSFGG 188

Query: 185 DGVVPDQSNPGTESTTQ-PADYSTGNFCGFELCSTRSKLDAISYPSHNLSHSVSSSSLDV 244
           DGVVP Q    T    Q   ++  G   GF      S     +    +L+HS S SS+D+
Sbjct: 189 DGVVPLQVEESTSHLQQSQQNFQLGINYGFS-----SGAHYNNNSLKDLNHSASVSSMDI 248

Query: 245 VAVPDRNTASDASYPAGQTAL--------PTTEKAVQLRGMDREARVLRYREKKKNRKFE 304
             VP+ +TASD +    +T          P T+   QL  M+REARVLRYREKKK RKF+
Sbjct: 249 SVVPE-STASDITVQHPRTTKETIDQLSGPPTQVVQQLTPMEREARVLRYREKKKTRKFD 308

Query: 305 KTIRYASRKAYAEIRPRVKGRFIKRSEMKSEMERMYAGAGVGYMSRDGQYGVVPS 324
           KTIRYASRKAYAEIRPR+KGRF KR E ++E E +++      MS  G YG+VPS
Sbjct: 309 KTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIFS---TSLMSETG-YGIVPS 346

[Close]

BLAST of CmaCh05G006790 vs. ExPASy Swiss-Prot
Match: O50055 (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 5.6e-45
Identity = 132/356 (37.08%), Postives = 182/356 (51.12%), Query Frame = 0


Query: 18  CYSCKSAPAALFCRHDAAFLCLRCDAQIH-SHTTGTRHPRVWLCEVCEQAPATITCNADA 77
           C +C+SA   ++CR D+A+LC  CDAQ+H ++   +RH RV +C+ CE+APA   C ADA
Sbjct: 12  CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADA 71

Query: 78  AALCPSCDADIHSVNPLARRHDRSAIQPFYDSPPSASV---------------------- 137
           A+LC +CD++IHS NPLARRH R  I P  +   S++                       
Sbjct: 72  ASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVLGQEE 131

Query: 138 -----ASVFKFLLPTQHQHD------------VGHPDLKSEDIFFSDMDS--LIDFDYPT 197
                A    +LLP   ++             +   D  S D  F+D  +   +D + P 
Sbjct: 132 EDEDEAEAASWLLPNSGKNSGNNNGFSIGDEFLNLVDYSSSDKQFTDQSNQYQLDCNVPQ 191

Query: 198 AG---DGVVPDQSNPGTESTTQPADYSTGNFCGFELCSTRSKLDAISYPSHNLSHSVSSS 257
                DGVVP Q         +  ++     CG           A+   + +LSH V+ S
Sbjct: 192 RSYGEDGVVPLQIEVSKGMYQEQQNFQLSINCG--------SWGALRSSNGSLSHMVNVS 251

Query: 258 SLDVVAVPDRNTASDASY-----PAGQTALPTTEKAVQLRGMDREARVLRYREKKKNRKF 317
           S+D+  VP+ +T SDA+      P   T  P    A  L   DREARVLRYREKKK RKF
Sbjct: 252 SMDLGVVPE-STTSDATVSNPRSPKAVTDQPPYPPAQMLSPRDREARVLRYREKKKMRKF 311

Query: 318 EKTIRYASRKAYAEIRPRVKGRFIKRSEMKSEMERMYAGAGVGYMSRDGQYGVVPS 324
           EKTIRYASRKAYAE RPR+KGRF K+ ++  E  + ++      ++ D  YG+VPS
Sbjct: 312 EKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAFS----TMITFDTGYGIVPS 354

[Close]

BLAST of CmaCh05G006790 vs. TAIR 10
Match: AT5G57660.1 (CONSTANS-like 5 )

HSP 1 Score: 269.6 bits (688), Expect = 3.2e-72
Identity = 171/368 (46.47%), Postives = 219/368 (59.51%), Query Frame = 0


Query: 1   MQSFAGGWAAVATAKPLCYSCKSAPAALFCRHDAAFLCLRCDAQIHSHTTGTRHPRVWLC 60
           ++S +GGW A A +   C +CKS  AA+FCR D+AFLC+ CD +IHS    TRH RVW+C
Sbjct: 8   IKSISGGWGAAARS---CDACKSVTAAVFCRVDSAFLCIACDTRIHSF---TRHERVWVC 67

Query: 61  EVCEQAPATITCNADAAALCPSCDADIHSVNPLARRHDRSAIQPFYDSPPSA----SVAS 120
           EVCEQAPA +TC ADAAALC SCDADIHS NPLA RH+R  ++ F+DS  +A    S +S
Sbjct: 68  EVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISASS 127

Query: 121 VF------------------------KFLLPTQHQH----DVGHPDLK-SEDIFFSDMDS 180
            F                         +LLP         ++G  ++K S D  FSD D 
Sbjct: 128 TFGILGSSTTVDLTAVPVMADDLGLCPWLLPNDFNEPAKIEIGTENMKGSSDFMFSDFDR 187

Query: 181 LIDFDYPTA---------GDGVVPDQSNPGTESTTQPADYSTGNFCGFELCSTRSKLDAI 240
           LIDF++P +         GD +VP Q+       T+P   +  + C F++   RSKL A 
Sbjct: 188 LIDFEFPNSFNHHQNNAGGDSLVPVQTK------TEPLPLTNNDHC-FDIDFCRSKLSAF 247

Query: 241 SYPSHNLSHSVSSSSLDVVAVPDRNTASDASYPAGQTALPTTEKAVQLRGMDREARVLRY 300
           +YPS ++SHSVS+SS++   VPD NT  + S         TT    Q   MDREARVLRY
Sbjct: 248 TYPSQSVSHSVSTSSIEYGVVPDGNT--NNSVNRSTITSSTTGGDHQASSMDREARVLRY 307

Query: 301 REKKKNRKFEKTIRYASRKAYAEIRPRVKGRFIKRSEMKSE---MERMYAGAGVGYMSRD 324
           REK+KNRKFEKTIRYASRKAYAE RPR+KGRF KR+E +++   +  +YA A        
Sbjct: 308 REKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETENDDIFLSHVYASAA------H 354

[Close]

BLAST of CmaCh05G006790 vs. TAIR 10
Match: AT5G24930.1 (CONSTANS-like 4 )

HSP 1 Score: 230.7 bits (587), Expect = 1.7e-60
Identity = 151/366 (41.26%), Postives = 200/366 (54.64%), Query Frame = 0


Query: 14  AKPLCYSCKSAPAALFCRHDAAFLCLRCDAQIH-SHTTGTRHPRVWLCEVCEQAPATITC 73
           A  LC SCKSA AAL+CR DAAFLCL CD+++H ++   +RH RVW+CEVCEQAPA +TC
Sbjct: 46  ASKLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTC 105

Query: 74  NADAAALCPSCDADIHSVNPLARRHDRSAIQPFYDS------------------------ 133
            ADAAALC +CD DIHS NPLARRH+R  + PFYDS                        
Sbjct: 106 KADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCYFSDID 165

Query: 134 --------------------PPSASVASVFKFLLPTQHQHDVGHPDLKS-EDIFFSDMDS 193
                               P + + A+     + +  +     P++ + +   FSD D 
Sbjct: 166 GNGSREEEEEEAASWLLLPNPKTTTTATAGIVAVTSAEEVPGDSPEMNTGQQYLFSDPDP 225

Query: 194 LIDFDYPTAGDGVVP-DQSNPGTEST----TQPADYSTGNFCGFELCSTRSKLDAISYPS 253
            +D DY      V   +Q++ GT+       +     T N   FE+  T           
Sbjct: 226 YLDLDYGNVDPKVESLEQNSSGTDGVVPVENRTVRIPTVNENCFEMDFTGGSKGFTYGGG 285

Query: 254 HN-LSHSVSSSSLDVVAVPDRNTASDASYPAGQTAL----PTTEKAVQLRGMDREARVLR 313
           +N +SHSVSSSS++V  VPD  + +D SYP G  A     P T++AV L   +REARV+R
Sbjct: 286 YNCISHSVSSSSMEVGVVPDGGSVADVSYPYGGPATSGADPGTQRAVPLTSAEREARVMR 345

Query: 314 YREKKKNRKFEKTIRYASRKAYAEIRPRVKGRFIKRSEMKSEMERMYAGAGVGYMSRDGQ 324
           YREK+KNRKFEKTIRYASRKAYAE+RPR+KGRF KR++     +       VG+      
Sbjct: 346 YREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNESND------VVGHGGIFSG 405

[Close]

BLAST of CmaCh05G006790 vs. TAIR 10
Match: AT2G24790.1 (CONSTANS-like 3 )

HSP 1 Score: 216.9 bits (551), Expect = 2.5e-56
Identity = 149/331 (45.02%), Postives = 193/331 (58.31%), Query Frame = 0


Query: 11  VATAKPLCYSCKSAPAALFCRHDAAFLCLRCDAQIH-SHTTGTRHPRVWLCEVCEQAPAT 70
           +A++  LC SCKS  A LFCR DAAFLC  CD +IH ++   +RH RVWLCEVCEQAPA 
Sbjct: 1   MASSSRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAH 60

Query: 71  ITCNADAAALCPSCDADIHSVNPLARRHDRSAIQPFYDS-PPSASVASVFKFLLPTQHQH 130
           +TC ADAAALC +CD DIHS NPL+RRH+R  I PFYD+  P+ S +S   F+       
Sbjct: 61  VTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFV-----DE 120

Query: 131 DVGHPD----LKSEDIFFSDMDSLIDFDYP----------TAGDGVVPDQSNPGTESTTQ 190
           D G       L  E I  +++ S  D DYP          +  DGVVP Q+         
Sbjct: 121 DGGDVTASWLLAKEGIEITNLFS--DLDYPKIEVTSEENSSGNDGVVPVQNKL------- 180

Query: 191 PADYSTGNFCGFELCSTRSKLDAISYPSHNLSHSVSSSSLDVVAVPDRNTASDASYPAGQ 250
              +   ++  F+L +++      ++    ++ +VS+ ++DV  VP+           G 
Sbjct: 181 ---FLNEDYFNFDLSASKISQQGFNF----INQTVSTRTIDVPLVPE---------SGGV 240

Query: 251 TALPTTEK--AVQLRGMDREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRVKGRFIK 310
           TA  T  +  AVQL   +REARVLRYREK+KNRKFEKTIRYASRKAYAE+RPR+KGRF K
Sbjct: 241 TAEMTNTETPAVQLSPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAK 293

Query: 311 RSEMKSEMERMYAGAGVGYMSRDGQYGVVPS 324
           R++      R   G  VG     G +GVVPS
Sbjct: 301 RTD-----SRENDGGDVGVY---GGFGVVPS 293

[Close]

BLAST of CmaCh05G006790 vs. TAIR 10
Match: AT3G02380.1 (CONSTANS-like 2 )

HSP 1 Score: 195.3 bits (495), Expect = 7.7e-50
Identity = 144/355 (40.56%), Postives = 190/355 (53.52%), Query Frame = 0


Query: 5   AGGWAAVATAKPLCYSCKSAPAALFCRHDAAFLCLRCDAQIH-SHTTGTRHPRVWLCEVC 64
           +G WA        C +C+SA   ++C  D+A+LC  CDA++H ++   +RH RV +C+ C
Sbjct: 9   SGTWARA------CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSC 68

Query: 65  EQAPATITCNADAAALCPSCDADIHSVNPLARRHDRSAIQPFYDSPPSASVAS------- 124
           E APA   C ADAA+LC +CDA+IHS NPLARRH R  I P   +  S+   S       
Sbjct: 69  ESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSMAPSETDADND 128

Query: 125 -----VFKFLLPTQHQH----------DVGHPDL----KSEDIFFSDMDSLIDFDYPTAG 184
                V  +LLP   ++           V + DL     S D  F D +    +     G
Sbjct: 129 EDDREVASWLLPNPGKNIGNQNNGFLFGVEYLDLVDYSSSMDNQFED-NQYTHYQRSFGG 188

Query: 185 DGVVPDQSNPGTESTTQ-PADYSTGNFCGFELCSTRSKLDAISYPSHNLSHSVSSSSLDV 244
           DGVVP Q    T    Q   ++  G   GF      S     +    +L+HS S SS+D+
Sbjct: 189 DGVVPLQVEESTSHLQQSQQNFQLGINYGFS-----SGAHYNNNSLKDLNHSASVSSMDI 248

Query: 245 VAVPDRNTASDASYPAGQTAL--------PTTEKAVQLRGMDREARVLRYREKKKNRKFE 304
             VP+ +TASD +    +T          P T+   QL  M+REARVLRYREKKK RKF+
Sbjct: 249 SVVPE-STASDITVQHPRTTKETIDQLSGPPTQVVQQLTPMEREARVLRYREKKKTRKFD 308

Query: 305 KTIRYASRKAYAEIRPRVKGRFIKRSEMKSEMERMYAGAGVGYMSRDGQYGVVPS 324
           KTIRYASRKAYAEIRPR+KGRF KR E ++E E +++      MS  G YG+VPS
Sbjct: 309 KTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIFS---TSLMSETG-YGIVPS 346

[Close]

BLAST of CmaCh05G006790 vs. TAIR 10
Match: AT5G15850.1 (CONSTANS-like 1 )

HSP 1 Score: 183.0 bits (463), Expect = 4.0e-46
Identity = 132/356 (37.08%), Postives = 182/356 (51.12%), Query Frame = 0


Query: 18  CYSCKSAPAALFCRHDAAFLCLRCDAQIH-SHTTGTRHPRVWLCEVCEQAPATITCNADA 77
           C +C+SA   ++CR D+A+LC  CDAQ+H ++   +RH RV +C+ CE+APA   C ADA
Sbjct: 12  CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADA 71

Query: 78  AALCPSCDADIHSVNPLARRHDRSAIQPFYDSPPSASV---------------------- 137
           A+LC +CD++IHS NPLARRH R  I P  +   S++                       
Sbjct: 72  ASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVLGQEE 131

Query: 138 -----ASVFKFLLPTQHQHD------------VGHPDLKSEDIFFSDMDS--LIDFDYPT 197
                A    +LLP   ++             +   D  S D  F+D  +   +D + P 
Sbjct: 132 EDEDEAEAASWLLPNSGKNSGNNNGFSIGDEFLNLVDYSSSDKQFTDQSNQYQLDCNVPQ 191

Query: 198 AG---DGVVPDQSNPGTESTTQPADYSTGNFCGFELCSTRSKLDAISYPSHNLSHSVSSS 257
                DGVVP Q         +  ++     CG           A+   + +LSH V+ S
Sbjct: 192 RSYGEDGVVPLQIEVSKGMYQEQQNFQLSINCG--------SWGALRSSNGSLSHMVNVS 251

Query: 258 SLDVVAVPDRNTASDASY-----PAGQTALPTTEKAVQLRGMDREARVLRYREKKKNRKF 317
           S+D+  VP+ +T SDA+      P   T  P    A  L   DREARVLRYREKKK RKF
Sbjct: 252 SMDLGVVPE-STTSDATVSNPRSPKAVTDQPPYPPAQMLSPRDREARVLRYREKKKMRKF 311

Query: 318 EKTIRYASRKAYAEIRPRVKGRFIKRSEMKSEMERMYAGAGVGYMSRDGQYGVVPS 324
           EKTIRYASRKAYAE RPR+KGRF K+ ++  E  + ++      ++ D  YG+VPS
Sbjct: 312 EKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAFS----TMITFDTGYGIVPS 354

The following BLAST results are available for this feature:

BLAST of CmaCh05G006790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHH8	4.5e-71	46.47	Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2...	[more]
Q940T9	2.3e-59	41.26	Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2...	[more]
Q9SK53	3.5e-55	45.02	Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1...	[more]
Q96502	1.1e-48	40.56	Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=COL2 PE=1...	[more]
O50055	5.6e-45	37.08	Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1...	[more]

BLAST of CmaCh05G006790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57660.1	3.2e-72	46.47	CONSTANS-like 5	[more]
AT5G24930.1	1.7e-60	41.26	CONSTANS-like 4	[more]
AT2G24790.1	2.5e-56	45.02	CONSTANS-like 3	[more]
AT3G02380.1	7.7e-50	40.56	CONSTANS-like 2	[more]
AT5G15850.1	4.0e-46	37.08	CONSTANS-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 13..53 e-value: 1.8E-5 score: 34.2 coord: 55..102 e-value: 6.8E-11 score: 52.2
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 15..50 e-value: 1.3E-5 score: 25.2 coord: 57..100 e-value: 1.7E-6 score: 28.1
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 55..102 score: 9.370983
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 13..59 score: 10.324018
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 251..293 e-value: 2.0E-17 score: 63.0
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 251..293 score: 16.380264
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..176
None	No IPR available	PANTHER	PTHR31319	ZINC FINGER PROTEIN CONSTANS-LIKE 4	coord: 5..323
None	No IPR available	PANTHER	PTHR31319:SF53	ZINC FINGER PROTEIN CONSTANS-LIKE 5	coord: 5..323
None	No IPR available	CDD	cd19821	Bbox1_BBX-like	coord: 17..59 e-value: 4.88846E-11 score: 54.9963
None	No IPR available	CDD	cd19821	Bbox1_BBX-like	coord: 59..102 e-value: 6.45924E-14 score: 63.0855

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G006790.1	CmaCh05G006790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009909	regulation of flower development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding