CmaCh05G006350 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G006350
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionflowering-promoting factor 1-like
LocationCma_Chr05: 3187975 .. 3188388 (-)
RNA-Seq ExpressionCmaCh05G006350
SyntenyCmaCh05G006350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGGGGTTTGGGTTTTCAAGAACGGTGTAATTCGTTTGATCGAAAACCCTCAAGCAGATTCCAATGGAAGGCTTGGGAACTCGAGACGAAAGGTACTGATATACTTGCCGACGGGTCAGGCCGTGTCGTCCTACTCCTTGCTACAGGAAATCCTCACATCGCTGGGATGGGAGAGGTACTATGGAGGTGATCCAGAGCTGTTTCAGTTTCATAAACGCTCCTCCATTGACCTTATTTCTCTCCCCAAGGATTATGCCAAGTTCAACTCCGTTCACATGTATGACATAGTCATTAAAAACCCTAATCTCTTCCACGTTCGAGATGTGTGAGTCTAAAAGCTTCATGGAGTTTTTCGTTATTTCAAGTATTTTTATCATTTTCTAAGAAATGGGTGCTTTGTATTATCATAA

mRNA sequence

ATGTCCGGGGTTTGGGTTTTCAAGAACGGTGTAATTCGTTTGATCGAAAACCCTCAAGCAGATTCCAATGGAAGGCTTGGGAACTCGAGACGAAAGGTACTGATATACTTGCCGACGGGTCAGGCCGTGTCGTCCTACTCCTTGCTACAGGAAATCCTCACATCGCTGGGATGGGAGAGGTACTATGGAGGTGATCCAGAGCTGTTTCAGTTTCATAAACGCTCCTCCATTGACCTTATTTCTCTCCCCAAGGATTATGCCAAGTTCAACTCCGTTCACATAAATGGGTGCTTTGTATTATCATAA

Coding sequence (CDS)

ATGTCCGGGGTTTGGGTTTTCAAGAACGGTGTAATTCGTTTGATCGAAAACCCTCAAGCAGATTCCAATGGAAGGCTTGGGAACTCGAGACGAAAGGTACTGATATACTTGCCGACGGGTCAGGCCGTGTCGTCCTACTCCTTGCTACAGGAAATCCTCACATCGCTGGGATGGGAGAGGTACTATGGAGGTGATCCAGAGCTGTTTCAGTTTCATAAACGCTCCTCCATTGACCTTATTTCTCTCCCCAAGGATTATGCCAAGTTCAACTCCGTTCACATAAATGGGTGCTTTGTATTATCATAA

Protein sequence

MSGVWVFKNGVIRLIENPQADSNGRLGNSRRKVLIYLPTGQAVSSYSLLQEILTSLGWERYYGGDPELFQFHKRSSIDLISLPKDYAKFNSVHINGCFVLS
Homology
BLAST of CmaCh05G006350 vs. ExPASy Swiss-Prot
Match: O24340 (Flowering-promoting factor 1 OS=Sinapis alba OX=3728 GN=FPF1 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 7.5e-33
Identity = 67/95 (70.53%), Postives = 82/95 (86.32%), Query Frame = 0

Query: 1  MSGVWVFKNGVIRLIENPQADSNGRLGNSRRKVLIYLPTGQAVSSYSLLQEILTSLGWER 60
          MSGVWVFKNGVIRL+ENP  + +G   NSRRKV++YLPTG+ +SSYS L++IL SLGWER
Sbjct: 1  MSGVWVFKNGVIRLVENP--NQSGGDTNSRRKVMVYLPTGEVISSYSTLEQILRSLGWER 60

Query: 61 YY-GGDPELFQFHKRSSIDLISLPKDYAKFNSVHI 95
          Y+ GGD +L QFHKRSSIDLISLPKD+ KF+SV++
Sbjct: 61 YFGGGDTDLLQFHKRSSIDLISLPKDFTKFSSVYM 93

BLAST of CmaCh05G006350 vs. ExPASy Swiss-Prot
Match: O23624 (Flowering-promoting factor 1 OS=Arabidopsis thaliana OX=3702 GN=FPF1 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.9e-32
Identity = 66/95 (69.47%), Postives = 81/95 (85.26%), Query Frame = 0

Query: 1  MSGVWVFKNGVIRLIENPQADSNGRLGNSRRKVLIYLPTGQAVSSYSLLQEILTSLGWER 60
          MSGVWVFKNGVIRL+ENP  + +G    +RRKV++YLPTG+ VSSYS L++IL SLGWER
Sbjct: 1  MSGVWVFKNGVIRLVENP--NQSGSDTQNRRKVMVYLPTGEVVSSYSTLEQILQSLGWER 60

Query: 61 YY-GGDPELFQFHKRSSIDLISLPKDYAKFNSVHI 95
          Y+ GGD +L QFHKRSSIDLISLP+D+ KFNSV++
Sbjct: 61 YFGGGDTDLLQFHKRSSIDLISLPRDFTKFNSVYM 93

BLAST of CmaCh05G006350 vs. ExPASy Swiss-Prot
Match: Q9LXB5 (Flowering-promoting factor 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLP2 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.7e-32
Identity = 64/95 (67.37%), Postives = 79/95 (83.16%), Query Frame = 0

Query: 1  MSGVWVFKNGVIRLIENP-QADSNGRLGNSRRKVLIYLPTGQAVSSYSLLQEILTSLGWE 60
          MSGVWVF NGVIRL+ENP Q+       + RR VL+YLPTG+AVSSYS L++IL SLGWE
Sbjct: 1  MSGVWVFNNGVIRLVENPNQSGGVSTQSHGRRNVLVYLPTGEAVSSYSSLEQILRSLGWE 60

Query: 61 RYYGGDPELFQFHKRSSIDLISLPKDYAKFNSVHI 95
          RY+ GD +L Q+HKRSSIDLISLP+D++KFNSV++
Sbjct: 61 RYFSGDSDLIQYHKRSSIDLISLPRDFSKFNSVYM 95

BLAST of CmaCh05G006350 vs. ExPASy Swiss-Prot
Match: Q9LGE3 (Flowering-promoting factor 1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RAA1 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 8.6e-29
Identity = 58/94 (61.70%), Postives = 73/94 (77.66%), Query Frame = 0

Query: 1  MSGVWVFKNGVIRLIENPQADSNGRLGNSRRKVLIYLPTGQAVSSYSLLQEILTSLGWER 60
          MSGVWVFKNGV+RL+E  QA +   +   RRK L++ P+GQ VSSY+ L+  LT+LGWER
Sbjct: 1  MSGVWVFKNGVVRLVEKQQATAGTAVAGGRRKALVHTPSGQVVSSYAALEARLTALGWER 60

Query: 61 YYGGDPELFQFHKRSSIDLISLPKDYAKFNSVHI 95
          YY  DP LFQFHKR S+DLISLP D++ F+SVH+
Sbjct: 61 YY-EDPSLFQFHKRGSLDLISLPADFSAFSSVHM 93

BLAST of CmaCh05G006350 vs. ExPASy Swiss-Prot
Match: Q5Q0B3 (Flowering-promoting factor 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLP1 PE=2 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 4.7e-27
Identity = 61/108 (56.48%), Postives = 77/108 (71.30%), Query Frame = 0

Query: 1   MSGVWVF-KNGVIRLIENPQADSNGRLGNS-----------RRKVLIYLPTGQAVSSYSL 60
           MSGVWVF KNGV+RL+ENP   S G    S           RRK+L++LP+ + VSSY  
Sbjct: 1   MSGVWVFNKNGVMRLVENPYNQSAGDSSESSSSGGNQQQRMRRKILVHLPSSEVVSSYGS 60

Query: 61  LQEILTSLGWERYYGGD--PELFQFHKRSSIDLISLPKDYAKFNSVHI 95
           L++IL +LGWERYY GD    L QFHKR+SIDLISLP+D++KFNS+H+
Sbjct: 61  LEKILKNLGWERYYSGDNTDHLLQFHKRTSIDLISLPRDFSKFNSIHM 108

BLAST of CmaCh05G006350 vs. TAIR 10
Match: AT5G24860.1 (flowering promoting factor 1 )

HSP 1 Score: 139.0 bits (349), Expect = 2.0e-33
Identity = 66/95 (69.47%), Postives = 81/95 (85.26%), Query Frame = 0

Query: 1  MSGVWVFKNGVIRLIENPQADSNGRLGNSRRKVLIYLPTGQAVSSYSLLQEILTSLGWER 60
          MSGVWVFKNGVIRL+ENP  + +G    +RRKV++YLPTG+ VSSYS L++IL SLGWER
Sbjct: 1  MSGVWVFKNGVIRLVENP--NQSGSDTQNRRKVMVYLPTGEVVSSYSTLEQILQSLGWER 60

Query: 61 YY-GGDPELFQFHKRSSIDLISLPKDYAKFNSVHI 95
          Y+ GGD +L QFHKRSSIDLISLP+D+ KFNSV++
Sbjct: 61 YFGGGDTDLLQFHKRSSIDLISLPRDFTKFNSVYM 93

BLAST of CmaCh05G006350 vs. TAIR 10
Match: AT5G10625.1 (BEST Arabidopsis thaliana protein match is: flowering promoting factor 1 (TAIR:AT5G24860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-33
Identity = 64/95 (67.37%), Postives = 79/95 (83.16%), Query Frame = 0

Query: 1  MSGVWVFKNGVIRLIENP-QADSNGRLGNSRRKVLIYLPTGQAVSSYSLLQEILTSLGWE 60
          MSGVWVF NGVIRL+ENP Q+       + RR VL+YLPTG+AVSSYS L++IL SLGWE
Sbjct: 1  MSGVWVFNNGVIRLVENPNQSGGVSTQSHGRRNVLVYLPTGEAVSSYSSLEQILRSLGWE 60

Query: 61 RYYGGDPELFQFHKRSSIDLISLPKDYAKFNSVHI 95
          RY+ GD +L Q+HKRSSIDLISLP+D++KFNSV++
Sbjct: 61 RYFSGDSDLIQYHKRSSIDLISLPRDFSKFNSVYM 95

BLAST of CmaCh05G006350 vs. TAIR 10
Match: AT4G31380.1 (FPF1-like protein 1 )

HSP 1 Score: 121.7 bits (304), Expect = 3.4e-28
Identity = 61/108 (56.48%), Postives = 77/108 (71.30%), Query Frame = 0

Query: 1   MSGVWVF-KNGVIRLIENPQADSNGRLGNS-----------RRKVLIYLPTGQAVSSYSL 60
           MSGVWVF KNGV+RL+ENP   S G    S           RRK+L++LP+ + VSSY  
Sbjct: 58  MSGVWVFNKNGVMRLVENPYNQSAGDSSESSSSGGNQQQRMRRKILVHLPSSEVVSSYGS 117

Query: 61  LQEILTSLGWERYYGGD--PELFQFHKRSSIDLISLPKDYAKFNSVHI 95
           L++IL +LGWERYY GD    L QFHKR+SIDLISLP+D++KFNS+H+
Sbjct: 118 LEKILKNLGWERYYSGDNTDHLLQFHKRTSIDLISLPRDFSKFNSIHM 165

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O243407.5e-3370.53Flowering-promoting factor 1 OS=Sinapis alba OX=3728 GN=FPF1 PE=2 SV=1[more]
O236242.9e-3269.47Flowering-promoting factor 1 OS=Arabidopsis thaliana OX=3702 GN=FPF1 PE=1 SV=1[more]
Q9LXB53.7e-3267.37Flowering-promoting factor 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=F... [more]
Q9LGE38.6e-2961.70Flowering-promoting factor 1-like protein 1 OS=Oryza sativa subsp. japonica OX=3... [more]
Q5Q0B34.7e-2756.48Flowering-promoting factor 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=F... [more]
Match NameE-valueIdentityDescription
AT5G24860.12.0e-3369.47flowering promoting factor 1 [more]
AT5G10625.12.7e-3367.37BEST Arabidopsis thaliana protein match is: flowering promoting factor 1 (TAIR:A... [more]
AT4G31380.13.4e-2856.48FPF1-like protein 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33433:SF15FLOWERING-PROMOTING FACTOR 1-LIKE PROTEIN 2coord: 1..94
IPR039274Flowering-promoting factor 1PANTHERPTHR33433FLOWERING-PROMOTING FACTOR 1-LIKE PROTEIN 1coord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G006350.1CmaCh05G006350.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009909 regulation of flower development
biological_process GO:0010228 vegetative to reproductive phase transition of meristem