CmaCh05G006270 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G006270
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionMethionyl-tRNA synthetase
LocationCma_Chr05: 3140935 .. 3141135 (-)
RNA-Seq ExpressionCmaCh05G006270
SyntenyCmaCh05G006270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTTGGTGTTCGTGTGCGATGAGGATCAGAGGGTGCTGTCCAGGCAACCAGCTCCAGGGGCTTGCCCCTTCTGCGGAGGCATGATCCAGGCCACCGACGTTGAAAGCCAATGGAGGTTCTGCTTCCTCCCCCTTTACTGGAAAACCAAACGCAAGTTCTATTGCACCATGTGCACCAGACAACTCGTTATACAGTAG

mRNA sequence

ATGTGTTTGGTGTTCGTGTGCGATGAGGATCAGAGGGTGCTGTCCAGGCAACCAGCTCCAGGGGCTTGCCCCTTCTGCGGAGGCATGATCCAGGCCACCGACGTTGAAAGCCAATGGAGGTTCTGCTTCCTCCCCCTTTACTGGAAAACCAAACGCAAGTTCTATTGCACCATGTGCACCAGACAACTCGTTATACAGTAG

Coding sequence (CDS)

ATGTGTTTGGTGTTCGTGTGCGATGAGGATCAGAGGGTGCTGTCCAGGCAACCAGCTCCAGGGGCTTGCCCCTTCTGCGGAGGCATGATCCAGGCCACCGACGTTGAAAGCCAATGGAGGTTCTGCTTCCTCCCCCTTTACTGGAAAACCAAACGCAAGTTCTATTGCACCATGTGCACCAGACAACTCGTTATACAGTAG

Protein sequence

MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCTRQLVIQ
Homology
BLAST of CmaCh05G006270 vs. TAIR 10
Match: AT5G10695.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 100.9 bits (250), Expect = 4.0e-22
Identity = 39/65 (60.00%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60
          MCLVFVCD+D+RV+ R  APGACP+CGG +Q  DV SQWRFCF+PL  K+KR+  C+ C 
Sbjct: 1  MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60

Query: 61 RQLVI 66
          ++L++
Sbjct: 61 KRLIV 65

BLAST of CmaCh05G006270 vs. TAIR 10
Match: AT5G57123.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 94.0 bits (232), Expect = 4.9e-20
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 0

Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60
          MCLV +CDE++  L RQ APG+CP+CGG +Q  DVE +W FCF+PL +K KRK+ C+ C 
Sbjct: 1  MCLVCLCDEEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCD 60

Query: 61 RQLVI 66
          R+LV+
Sbjct: 61 RRLVL 65

BLAST of CmaCh05G006270 vs. TAIR 10
Match: AT4G29905.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 86.7 bits (213), Expect = 7.8e-18
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 0

Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60
          MCL  V  E++  L RQ APG CP+CGG + A D+E++W FCFLPL +K KRK+ C+ C 
Sbjct: 1  MCLEVVYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCE 60

Query: 61 RQLVI 66
          R LV+
Sbjct: 61 RHLVL 65

BLAST of CmaCh05G006270 vs. TAIR 10
Match: AT1G52855.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-09
Identity = 21/59 (35.59%), Postives = 35/59 (59.32%), Query Frame = 0

Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMC 60
          +C  F+ D+ ++V   +PA G C  CG      D+++  RFCF+P+YW++ R   C+ C
Sbjct: 2  VCFCFLVDQTRKVKRSKPAAGTCSRCGHCASIADMKTSTRFCFIPIYWRSWRAVVCSFC 60

BLAST of CmaCh05G006270 vs. TAIR 10
Match: AT5G10695.2 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages. )

HSP 1 Score: 47.0 bits (110), Expect = 6.9e-06
Identity = 23/65 (35.38%), Postives = 34/65 (52.31%), Query Frame = 0

Query: 1  MCLVFVCDEDQRVLSRQPAPGACPFCGGMIQATDVESQWRFCFLPLYWKTKRKFYCTMCT 60
          MCLVFVCD+D+RV+                         RFCF+PL  K+KR+  C+ C 
Sbjct: 1  MCLVFVCDQDERVIG------------------------RFCFVPLSNKSKRRHLCSTCG 41

Query: 61 RQLVI 66
          ++L++
Sbjct: 61 KRLIV 41

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT5G10695.14.0e-2260.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G57123.14.9e-2056.92unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G29905.17.8e-1853.85unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G52855.11.0e-0935.59unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G10695.26.9e-0635.38unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_c... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33320METHIONYL-TRNA SYNTHETASEcoord: 1..66
NoneNo IPR availablePANTHERPTHR33320:SF20METHIONYL-TRNA SYNTHETASEcoord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G006270.1CmaCh05G006270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004812 aminoacyl-tRNA ligase activity