CmaCh05G005840 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G005840
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	GATA transcription factor
Location	Cma_Chr05: 2900468 .. 2901893 (-)
RNA-Seq Expression	CmaCh05G005840
Synteny	CmaCh05G005840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGTGAAAATTGGGTGTCGAGCTTTCCCCATGAAACGCAAACCAACCCATTTTCTCTCTTAGCCACTTACTCTCGCTCCCTCTCTCCCACTCCTTCTTTTCTTCTCCCACTACTTCCAATTCCCTTTCCCCCAAATCCCACGCCCCATGGAACCCCCTGAACATTTCCACCTTAAAGCCTACACCTCCACCCACTCCTCCTCCGATCACCACCACACCGCCGCCGCTGAACACGACCTCTTCTTCGTCGAGAACCTCCTCGATTTCTCCGACGACCACCACGCCGACGCCGACGCCGACGCCGGGTTATTATCCGACAATACTAATAATAATCATCATAATACTAATACTCCCAGCAGCTGCTTCCACGATAATGGGAACTCCGCCCAACTAACTTCCTTTCTGGACCACGTTAACTTACCCGACGCCCATTTCTCCGCCGAACTCGCTATTCCGGTAATCCCTCTCTCAAACGATGCGTTTTGCTCTACTTTTTTTGTTTTTTAATTAAATATATATATATATATACTTTCAATTTATTATTATTATTATTATTATTATTATTATTATGAGGATTTTAATTTTAATTTTAATTTTAATTTTGTACAGTATGATGATTTACTTGAATTGGAATGGCTTTCGAATTTCGTAGAGGAATGCGAGTACATCCAAAACTTGGAATTAATTACCGGAGTCAAAGTCAAACCCCACGAACCCACCGCCGTGCCCCCCCGAAACGCCGCCGCTATCTTCAACCCGGGTGTTGTTTCCGTTCCAGCGAAGGCACGTAGCAAACGTTCACGCGCCGTCGTATCCAATTGGAACAACTCTCTCCTTCTTCCTCTTTCTCCGACCACATCCTCGTCTGAATCCGACATTAACGCTGAACCACCGCAATTGGTCAAAAAAGCGCCGCCCAAGGCGGTGGTGACAGCGAAGAAGAAGGATAGTCCGGAGGGTGGAGTGTCTCCTGCGGGAGAGGAGCGTAGGTGCATGCATTGTGCCACCGATAAGACGCCGCAATGGCGGACTGGCCCAATGGGCCCAAAAACGCTATGTAACGCTTGTGGGGTTCGGTATAAATCCGGCCGCTTGGTGCCGGAGTACCGCCCTGCTGCTAGTCCTACCTTTGTGCTCACGAAACACTCCAATTCCCACCGGAAAGTTATGGAGCTACGGCGGCAGAAGGAGATTATTAGAGGCCAACAACAACCGCAGCCATTGGTTTTGGATCATCACCGCCAAGACCTCATATTTGATGCTTCCAGCTGTGATAATTATCTTATCCATCAACACGTAGGTCCCGATTTCCGGCAGCTCATCTGACCGCCGCCGCCGTTATCGGTAGAGCTCCGCCAATTTCATCAATTTGGTGTTTTTTACCCCTCAAACTCAT

mRNA sequence

GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGTGAAAATTGGGTGTCGAGCTTTCCCCATGAAACGCAAACCAACCCATTTTCTCTCTTAGCCACTTACTCTCGCTCCCTCTCTCCCACTCCTTCTTTTCTTCTCCCACTACTTCCAATTCCCTTTCCCCCAAATCCCACGCCCCATGGAACCCCCTGAACATTTCCACCTTAAAGCCTACACCTCCACCCACTCCTCCTCCGATCACCACCACACCGCCGCCGCTGAACACGACCTCTTCTTCGTCGAGAACCTCCTCGATTTCTCCGACGACCACCACGCCGACGCCGACGCCGACGCCGGGTTATTATCCGACAATACTAATAATAATCATCATAATACTAATACTCCCAGCAGCTGCTTCCACGATAATGGGAACTCCGCCCAACTAACTTCCTTTCTGGACCACGTTAACTTACCCGACGCCCATTTCTCCGCCGAACTCGCTATTCCGTATGATGATTTACTTGAATTGGAATGGCTTTCGAATTTCGTAGAGGAATGCGAGTACATCCAAAACTTGGAATTAATTACCGGAGTCAAAGTCAAACCCCACGAACCCACCGCCGTGCCCCCCCGAAACGCCGCCGCTATCTTCAACCCGGGTGTTGTTTCCGTTCCAGCGAAGGCACGTAGCAAACGTTCACGCGCCGTCGTATCCAATTGGAACAACTCTCTCCTTCTTCCTCTTTCTCCGACCACATCCTCGTCTGAATCCGACATTAACGCTGAACCACCGCAATTGGTCAAAAAAGCGCCGCCCAAGGCGGTGGTGACAGCGAAGAAGAAGGATAGTCCGGAGGGTGGAGTGTCTCCTGCGGGAGAGGAGCGTAGGTGCATGCATTGTGCCACCGATAAGACGCCGCAATGGCGGACTGGCCCAATGGGCCCAAAAACGCTATGTAACGCTTGTGGGGTTCGGTATAAATCCGGCCGCTTGGTGCCGGAGTACCGCCCTGCTGCTAGTCCTACCTTTGTGCTCACGAAACACTCCAATTCCCACCGGAAAGTTATGGAGCTACGGCGGCAGAAGGAGATTATTAGAGGCCAACAACAACCGCAGCCATTGGTTTTGGATCATCACCGCCAAGACCTCATATTTGATGCTTCCAGCTGTGATAATTATCTTATCCATCAACACGTAGGTCCCGATTTCCGGCAGCTCATCTGACCGCCGCCGCCGTTATCGGTAGAGCTCCGCCAATTTCATCAATTTGGTGTTTTTTACCCCTCAAACTCAT

Coding sequence (CDS)

ATGGAACCCCCTGAACATTTCCACCTTAAAGCCTACACCTCCACCCACTCCTCCTCCGATCACCACCACACCGCCGCCGCTGAACACGACCTCTTCTTCGTCGAGAACCTCCTCGATTTCTCCGACGACCACCACGCCGACGCCGACGCCGACGCCGGGTTATTATCCGACAATACTAATAATAATCATCATAATACTAATACTCCCAGCAGCTGCTTCCACGATAATGGGAACTCCGCCCAACTAACTTCCTTTCTGGACCACGTTAACTTACCCGACGCCCATTTCTCCGCCGAACTCGCTATTCCGTATGATGATTTACTTGAATTGGAATGGCTTTCGAATTTCGTAGAGGAATGCGAGTACATCCAAAACTTGGAATTAATTACCGGAGTCAAAGTCAAACCCCACGAACCCACCGCCGTGCCCCCCCGAAACGCCGCCGCTATCTTCAACCCGGGTGTTGTTTCCGTTCCAGCGAAGGCACGTAGCAAACGTTCACGCGCCGTCGTATCCAATTGGAACAACTCTCTCCTTCTTCCTCTTTCTCCGACCACATCCTCGTCTGAATCCGACATTAACGCTGAACCACCGCAATTGGTCAAAAAAGCGCCGCCCAAGGCGGTGGTGACAGCGAAGAAGAAGGATAGTCCGGAGGGTGGAGTGTCTCCTGCGGGAGAGGAGCGTAGGTGCATGCATTGTGCCACCGATAAGACGCCGCAATGGCGGACTGGCCCAATGGGCCCAAAAACGCTATGTAACGCTTGTGGGGTTCGGTATAAATCCGGCCGCTTGGTGCCGGAGTACCGCCCTGCTGCTAGTCCTACCTTTGTGCTCACGAAACACTCCAATTCCCACCGGAAAGTTATGGAGCTACGGCGGCAGAAGGAGATTATTAGAGGCCAACAACAACCGCAGCCATTGGTTTTGGATCATCACCGCCAAGACCTCATATTTGATGCTTCCAGCTGTGATAATTATCTTATCCATCAACACGTAGGTCCCGATTTCCGGCAGCTCATCTGA

Protein sequence

MEPPEHFHLKAYTSTHSSSDHHHTAAAEHDLFFVENLLDFSDDHHADADADAGLLSDNTNNNHHNTNTPSSCFHDNGNSAQLTSFLDHVNLPDAHFSAELAIPYDDLLELEWLSNFVEECEYIQNLELITGVKVKPHEPTAVPPRNAAAIFNPGVVSVPAKARSKRSRAVVSNWNNSLLLPLSPTTSSSESDINAEPPQLVKKAPPKAVVTAKKKDSPEGGVSPAGEERRCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEIIRGQQQPQPLVLDHHRQDLIFDASSCDNYLIHQHVGPDFRQLI

Homology

[Close]

BLAST of CmaCh05G005840 vs. ExPASy Swiss-Prot
Match: P69781 (GATA transcription factor 12 OS=Arabidopsis thaliana OX=3702 GN=GATA12 PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 4.3e-64
Identity = 177/349 (50.72%), Postives = 210/349 (60.17%), Query Frame = 0


Query: 20  DHHHTAAAEHDLFFVENLLDFSDDHHADADADAGLLSDNTNNNHHNTNTPSSCFHDNGNS 79
           D  H      D    + L+DFS+D     D +  +++D+T      T T SS    N ++
Sbjct: 3   DEAHEFFHTSDFAVDDLLVDFSNDD----DEENDVVADSTTT---TTITDSS----NFSA 62

Query: 80  AQLTSFLDHVNLPD-AHFSAELAIPYDDLL-ELEWLSNFVEEC---EYIQNLELITGVKV 139
           A L SF  H ++ D   FS +L IP DDL  ELEWLSN V+E    E +  LELI+G K 
Sbjct: 63  ADLPSF--HGDVQDGTSFSGDLCIPSDDLADELEWLSNIVDESLSPEDVHKLELISGFKS 122

Query: 140 K--PHEPTAVP--PRNAAAIFNPGVVSVPAKARSKRSRAVVSNWNNSLLLP--------L 199
           +  P   T  P  P +++ IF    VSVPAKARSKRSRA   NW +  LL          
Sbjct: 123 RPDPKSDTGSPENPNSSSPIFTTD-VSVPAKARSKRSRAAACNWASRGLLKETFYDSPFT 182

Query: 200 SPTTSSSESDIN--AEPPQLVKKAPPKAVVTA---KKKD--SPEGGVSPAGEERRCMHCA 259
             T  SS+  ++    PP L+     K  V     +KKD  SPE G     EERRC+HCA
Sbjct: 183 GETILSSQQHLSPPTSPPLLMAPLGKKQAVDGGHRRKKDVSSPESG---GAEERRCLHCA 242

Query: 260 TDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQ 319
           TDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVL KHSNSHRKVMELRRQ
Sbjct: 243 TDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQ 302

Query: 320 KEIIRGQQQPQPLVLDHHRQD--LIFDASS-CDNYLIHQHVGPDFRQLI 342
           KE+ R   +    +  HH  D  +IFD SS  D+YLIH +VGPDFRQLI
Sbjct: 303 KEMSRAHHE---FIHHHHGTDTAMIFDVSSDGDDYLIHHNVGPDFRQLI 331

[Close]

BLAST of CmaCh05G005840 vs. ExPASy Swiss-Prot
Match: O82632 (GATA transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=GATA9 PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.4e-51
Identity = 147/334 (44.01%), Postives = 188/334 (56.29%), Query Frame = 0


Query: 26  AAEHDLFFVENLLDFSDDHHADADADAGLLSDNTNNNHHNTNTPSSCFHDNGNSAQLTSF 85
           A   D F V++LLDFS+D   D + D GL     N    ++   +    D+ NS+ L  F
Sbjct: 12  AGNPDSFVVDDLLDFSND---DGEVDDGL-----NTLPDSSTLSTGTLTDSSNSSSL--F 71

Query: 86  LDHVNLPDAHFSAELAIPYDDLLELEWLSNFVEEC---EYIQNLELITGVK-------VK 145
            D     D      L IP DD+ ELEWLSNFVEE    E    L L +G+K         
Sbjct: 72  TDGTGFSD------LYIPNDDIAELEWLSNFVEESFAGEDQDKLHLFSGLKNPQTTGSTL 131

Query: 146 PHEPTAVPPRNAAAI-FNPGVVSVPAKARSKRSRAVVSNWNNSLLLPLSPTTSSSESDIN 205
            H     P  +   I  +   V+VPAKARSKRSR+  S W + LL       S ++SD  
Sbjct: 132 THLIKPEPELDHQFIDIDESNVAVPAKARSKRSRSAASTWASRLL-------SLADSD-- 191

Query: 206 AEPPQLVKKAPPKAVVTAKKKD---SPEGGVSPAGEERRCMHCATDKTPQWRTGPMGPKT 265
                  +  P K     K++D     +     +G  RRC+HCAT+KTPQWRTGPMGPKT
Sbjct: 192 -------ETNPKKKQRRVKEQDFAGDMDVDCGESGGGRRCLHCATEKTPQWRTGPMGPKT 251

Query: 266 LCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEIIRGQQQPQPLVLD 325
           LCNACGVRYKSGRLVPEYRPA+SPTFV+ +HSNSHRKVMELRRQKE+     + + L+  
Sbjct: 252 LCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHRKVMELRRQKEM-----RDEHLLSQ 308

Query: 326 HHRQDLIFD-ASSCDNYLIH---QHVGPDFRQLI 342
              ++L+ D  S+ +++L+H    HV PDFR LI
Sbjct: 312 LRCENLLMDIRSNGEDFLMHNNTNHVAPDFRHLI 308

[Close]

BLAST of CmaCh05G005840 vs. ExPASy Swiss-Prot
Match: O49741 (GATA transcription factor 2 OS=Arabidopsis thaliana OX=3702 GN=GATA2 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.8e-41
Identity = 117/286 (40.91%), Postives = 150/286 (52.45%), Query Frame = 0


Query: 30  DLFFVENLLDFSDDHHADADADAGLLSDNTNNNHHNTNTPSSCFHDNGNSAQLTSFLDHV 89
           DL  +++LLDFS++    A +  G  +  ++++      PS   H   +SA   SFL   
Sbjct: 10  DLLRIDDLLDFSNEDIFSASSSGGSTAATSSSSFPPPQNPSFHHHHLPSSADHHSFLH-- 69

Query: 90  NLPDAHFSAELAIPYDDLLELEWLSNFVEE--CEYIQNLELITGVKVKPHEPTAVPPRNA 149
                    ++ +P DD   LEWLS FV++   ++  N    T   VK            
Sbjct: 70  ---------DICVPSDDAAHLEWLSQFVDDSFADFPANPLGGTMTSVKTE---------- 129

Query: 150 AAIFNPGVVSVPAKARSKRSRAVVSNWNNSLLLPLSPTTSSSESDINAEPPQLVKKAPPK 209
                    S P K RSKRSRA          +PL        S    +P    K+    
Sbjct: 130 --------TSFPGKPRSKRSRAPAPFAGTWSPMPLESEHQQLHSAAKFKPK---KEQSGG 189

Query: 210 AVVTAKKKDSPEGGVSPAGEERRCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVP 269
                 +  S     +  G  RRC HCA++KTPQWRTGP+GPKTLCNACGVR+KSGRLVP
Sbjct: 190 GGGGGGRHQSSSSETTEGGGMRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVP 249

Query: 270 EYRPAASPTFVLTKHSNSHRKVMELRRQKEIIRGQQQPQPLVLDHH 314
           EYRPA+SPTFVLT+HSNSHRKVMELRRQKE++R   QPQ + L HH
Sbjct: 250 EYRPASSPTFVLTQHSNSHRKVMELRRQKEVMR---QPQQVQLHHH 260

[Close]

BLAST of CmaCh05G005840 vs. ExPASy Swiss-Prot
Match: O49743 (GATA transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=GATA4 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.0e-36
Identity = 114/272 (41.91%), Postives = 142/272 (52.21%), Query Frame = 0


Query: 30  DLFFVENLLDFSDDHHADADADAGLLSDNTNNNHHNTNTPSSCFHDNGNSAQLTSFLDHV 89
           DL  +++LLDFS+D            S +T  +   ++  SS   +N  S   +++    
Sbjct: 10  DLLRIDDLLDFSNDEI--------FSSSSTVTSSAASSAASS---ENPFSFPSSTYTSPT 69

Query: 90  NLPDAHFSAELAIPYDDLLELEWLSNFVEECEYIQNLELITGVKVKPHEPTAVPPRNAAA 149
            L D  F+ +L +P DD   LEWLS FV++          +     P   T  P      
Sbjct: 70  LLTD--FTHDLCVPSDDAAHLEWLSRFVDDS--------FSDFPANPLTMTVRPE----- 129

Query: 150 IFNPGVVSVPAKARSKRSRA----VVSNWNNSLLLPLSPTTSSSESDINAEPPQLVKKAP 209
                 +S   K RS+RSRA    V   W      P+S           +E    V K  
Sbjct: 130 ------ISFTGKPRSRRSRAPAPSVAGTW-----APMS----------ESELCHSVAKPK 189

Query: 210 PKAVVTAKKKDSPEGGVSPAGEERRCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 269
           PK V  A+           A   RRC HCA++KTPQWRTGP+GPKTLCNACGVRYKSGRL
Sbjct: 190 PKKVYNAES--------VTADGARRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 226

Query: 270 VPEYRPAASPTFVLTKHSNSHRKVMELRRQKE 298
           VPEYRPA+SPTFVLT+HSNSHRKVMELRRQKE
Sbjct: 250 VPEYRPASSPTFVLTQHSNSHRKVMELRRQKE 226

[Close]

BLAST of CmaCh05G005840 vs. ExPASy Swiss-Prot
Match: Q9FH57 (GATA transcription factor 5 OS=Arabidopsis thaliana OX=3702 GN=GATA5 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.8e-36
Identity = 116/292 (39.73%), Postives = 151/292 (51.71%), Query Frame = 0


Query: 30  DLFFVENLLDFS-DDHHADADADAGLLSDNTNNNHHNTNTPSSCFHDNGNSAQLTSFL-- 89
           D F V++LLD S DD  AD + D           H      S   +D+G++ + +S    
Sbjct: 39  DDFSVDDLLDLSNDDVFADEETD-------LKAQHEMVRVSSEEPNDDGDALRRSSDFSG 98

Query: 90  --DHVNLPDAHFSAELAIPYDDLLELEWLSNFVEECEYIQNLELITGVKV-KPHEPTAVP 149
             D  +LP    ++EL++P DDL  LEWLS+FVE+     +   +TG    KP   T   
Sbjct: 99  CDDFGSLP----TSELSLPADDLANLEWLSHFVEDSFTEYSGPNLTGTPTEKPAWLTGDR 158

Query: 150 PRNAAAIFNPGVVS--VPAKARSKRSRAVVSNWNNSLLLPLSPTTSSSESDINAEP---- 209
                A+         VPAKARSKR+R  +  W+        P++S S S  ++ P    
Sbjct: 159 KHPVTAVTEETCFKSPVPAKARSKRNRNGLKVWSLGSSSSSGPSSSGSTSSSSSGPSSPW 218

Query: 210 --------PQLVKKAPPKAVVTAKKKDSPE----GGVSPAGEERRCMHCATDKTPQWRTG 269
                   P +  + PP       KK S E    G +     +R+C HC   KTPQWR G
Sbjct: 219 FSGAELLEPVVTSERPP--FPKKHKKRSAESVFSGELQQLQPQRKCSHCGVQKTPQWRAG 278

Query: 270 PMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKE 298
           PMG KTLCNACGVRYKSGRL+PEYRPA SPTF    HSN HRKV+E+RR+KE
Sbjct: 279 PMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVIEMRRKKE 317

[Close]

BLAST of CmaCh05G005840 vs. TAIR 10
Match: AT5G25830.1 (GATA transcription factor 12 )

HSP 1 Score: 246.5 bits (628), Expect = 3.1e-65
Identity = 177/349 (50.72%), Postives = 210/349 (60.17%), Query Frame = 0


Query: 20  DHHHTAAAEHDLFFVENLLDFSDDHHADADADAGLLSDNTNNNHHNTNTPSSCFHDNGNS 79
           D  H      D    + L+DFS+D     D +  +++D+T      T T SS    N ++
Sbjct: 3   DEAHEFFHTSDFAVDDLLVDFSNDD----DEENDVVADSTTT---TTITDSS----NFSA 62

Query: 80  AQLTSFLDHVNLPD-AHFSAELAIPYDDLL-ELEWLSNFVEEC---EYIQNLELITGVKV 139
           A L SF  H ++ D   FS +L IP DDL  ELEWLSN V+E    E +  LELI+G K 
Sbjct: 63  ADLPSF--HGDVQDGTSFSGDLCIPSDDLADELEWLSNIVDESLSPEDVHKLELISGFKS 122

Query: 140 K--PHEPTAVP--PRNAAAIFNPGVVSVPAKARSKRSRAVVSNWNNSLLLP--------L 199
           +  P   T  P  P +++ IF    VSVPAKARSKRSRA   NW +  LL          
Sbjct: 123 RPDPKSDTGSPENPNSSSPIFTTD-VSVPAKARSKRSRAAACNWASRGLLKETFYDSPFT 182

Query: 200 SPTTSSSESDIN--AEPPQLVKKAPPKAVVTA---KKKD--SPEGGVSPAGEERRCMHCA 259
             T  SS+  ++    PP L+     K  V     +KKD  SPE G     EERRC+HCA
Sbjct: 183 GETILSSQQHLSPPTSPPLLMAPLGKKQAVDGGHRRKKDVSSPESG---GAEERRCLHCA 242

Query: 260 TDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQ 319
           TDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVL KHSNSHRKVMELRRQ
Sbjct: 243 TDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQ 302

Query: 320 KEIIRGQQQPQPLVLDHHRQD--LIFDASS-CDNYLIHQHVGPDFRQLI 342
           KE+ R   +    +  HH  D  +IFD SS  D+YLIH +VGPDFRQLI
Sbjct: 303 KEMSRAHHE---FIHHHHGTDTAMIFDVSSDGDDYLIHHNVGPDFRQLI 331

[Close]

BLAST of CmaCh05G005840 vs. TAIR 10
Match: AT4G32890.1 (GATA transcription factor 9 )

HSP 1 Score: 204.9 bits (520), Expect = 1.0e-52
Identity = 147/334 (44.01%), Postives = 188/334 (56.29%), Query Frame = 0


Query: 26  AAEHDLFFVENLLDFSDDHHADADADAGLLSDNTNNNHHNTNTPSSCFHDNGNSAQLTSF 85
           A   D F V++LLDFS+D   D + D GL     N    ++   +    D+ NS+ L  F
Sbjct: 12  AGNPDSFVVDDLLDFSND---DGEVDDGL-----NTLPDSSTLSTGTLTDSSNSSSL--F 71

Query: 86  LDHVNLPDAHFSAELAIPYDDLLELEWLSNFVEEC---EYIQNLELITGVK-------VK 145
            D     D      L IP DD+ ELEWLSNFVEE    E    L L +G+K         
Sbjct: 72  TDGTGFSD------LYIPNDDIAELEWLSNFVEESFAGEDQDKLHLFSGLKNPQTTGSTL 131

Query: 146 PHEPTAVPPRNAAAI-FNPGVVSVPAKARSKRSRAVVSNWNNSLLLPLSPTTSSSESDIN 205
            H     P  +   I  +   V+VPAKARSKRSR+  S W + LL       S ++SD  
Sbjct: 132 THLIKPEPELDHQFIDIDESNVAVPAKARSKRSRSAASTWASRLL-------SLADSD-- 191

Query: 206 AEPPQLVKKAPPKAVVTAKKKD---SPEGGVSPAGEERRCMHCATDKTPQWRTGPMGPKT 265
                  +  P K     K++D     +     +G  RRC+HCAT+KTPQWRTGPMGPKT
Sbjct: 192 -------ETNPKKKQRRVKEQDFAGDMDVDCGESGGGRRCLHCATEKTPQWRTGPMGPKT 251

Query: 266 LCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEIIRGQQQPQPLVLD 325
           LCNACGVRYKSGRLVPEYRPA+SPTFV+ +HSNSHRKVMELRRQKE+     + + L+  
Sbjct: 252 LCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHRKVMELRRQKEM-----RDEHLLSQ 308

Query: 326 HHRQDLIFD-ASSCDNYLIH---QHVGPDFRQLI 342
              ++L+ D  S+ +++L+H    HV PDFR LI
Sbjct: 312 LRCENLLMDIRSNGEDFLMHNNTNHVAPDFRHLI 308

[Close]

BLAST of CmaCh05G005840 vs. TAIR 10
Match: AT2G45050.1 (GATA transcription factor 2 )

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-42
Identity = 117/286 (40.91%), Postives = 150/286 (52.45%), Query Frame = 0


Query: 30  DLFFVENLLDFSDDHHADADADAGLLSDNTNNNHHNTNTPSSCFHDNGNSAQLTSFLDHV 89
           DL  +++LLDFS++    A +  G  +  ++++      PS   H   +SA   SFL   
Sbjct: 10  DLLRIDDLLDFSNEDIFSASSSGGSTAATSSSSFPPPQNPSFHHHHLPSSADHHSFLH-- 69

Query: 90  NLPDAHFSAELAIPYDDLLELEWLSNFVEE--CEYIQNLELITGVKVKPHEPTAVPPRNA 149
                    ++ +P DD   LEWLS FV++   ++  N    T   VK            
Sbjct: 70  ---------DICVPSDDAAHLEWLSQFVDDSFADFPANPLGGTMTSVKTE---------- 129

Query: 150 AAIFNPGVVSVPAKARSKRSRAVVSNWNNSLLLPLSPTTSSSESDINAEPPQLVKKAPPK 209
                    S P K RSKRSRA          +PL        S    +P    K+    
Sbjct: 130 --------TSFPGKPRSKRSRAPAPFAGTWSPMPLESEHQQLHSAAKFKPK---KEQSGG 189

Query: 210 AVVTAKKKDSPEGGVSPAGEERRCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVP 269
                 +  S     +  G  RRC HCA++KTPQWRTGP+GPKTLCNACGVR+KSGRLVP
Sbjct: 190 GGGGGGRHQSSSSETTEGGGMRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVP 249

Query: 270 EYRPAASPTFVLTKHSNSHRKVMELRRQKEIIRGQQQPQPLVLDHH 314
           EYRPA+SPTFVLT+HSNSHRKVMELRRQKE++R   QPQ + L HH
Sbjct: 250 EYRPASSPTFVLTQHSNSHRKVMELRRQKEVMR---QPQQVQLHHH 260

[Close]

BLAST of CmaCh05G005840 vs. TAIR 10
Match: AT3G60530.1 (GATA transcription factor 4 )

HSP 1 Score: 155.6 bits (392), Expect = 7.1e-38
Identity = 114/272 (41.91%), Postives = 142/272 (52.21%), Query Frame = 0


Query: 30  DLFFVENLLDFSDDHHADADADAGLLSDNTNNNHHNTNTPSSCFHDNGNSAQLTSFLDHV 89
           DL  +++LLDFS+D            S +T  +   ++  SS   +N  S   +++    
Sbjct: 10  DLLRIDDLLDFSNDEI--------FSSSSTVTSSAASSAASS---ENPFSFPSSTYTSPT 69

Query: 90  NLPDAHFSAELAIPYDDLLELEWLSNFVEECEYIQNLELITGVKVKPHEPTAVPPRNAAA 149
            L D  F+ +L +P DD   LEWLS FV++          +     P   T  P      
Sbjct: 70  LLTD--FTHDLCVPSDDAAHLEWLSRFVDDS--------FSDFPANPLTMTVRPE----- 129

Query: 150 IFNPGVVSVPAKARSKRSRA----VVSNWNNSLLLPLSPTTSSSESDINAEPPQLVKKAP 209
                 +S   K RS+RSRA    V   W      P+S           +E    V K  
Sbjct: 130 ------ISFTGKPRSRRSRAPAPSVAGTW-----APMS----------ESELCHSVAKPK 189

Query: 210 PKAVVTAKKKDSPEGGVSPAGEERRCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 269
           PK V  A+           A   RRC HCA++KTPQWRTGP+GPKTLCNACGVRYKSGRL
Sbjct: 190 PKKVYNAES--------VTADGARRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 226

Query: 270 VPEYRPAASPTFVLTKHSNSHRKVMELRRQKE 298
           VPEYRPA+SPTFVLT+HSNSHRKVMELRRQKE
Sbjct: 250 VPEYRPASSPTFVLTQHSNSHRKVMELRRQKE 226

[Close]

BLAST of CmaCh05G005840 vs. TAIR 10
Match: AT5G66320.1 (GATA transcription factor 5 )

HSP 1 Score: 153.7 bits (387), Expect = 2.7e-37
Identity = 116/292 (39.73%), Postives = 151/292 (51.71%), Query Frame = 0


Query: 30  DLFFVENLLDFS-DDHHADADADAGLLSDNTNNNHHNTNTPSSCFHDNGNSAQLTSFL-- 89
           D F V++LLD S DD  AD + D           H      S   +D+G++ + +S    
Sbjct: 39  DDFSVDDLLDLSNDDVFADEETD-------LKAQHEMVRVSSEEPNDDGDALRRSSDFSG 98

Query: 90  --DHVNLPDAHFSAELAIPYDDLLELEWLSNFVEECEYIQNLELITGVKV-KPHEPTAVP 149
             D  +LP    ++EL++P DDL  LEWLS+FVE+     +   +TG    KP   T   
Sbjct: 99  CDDFGSLP----TSELSLPADDLANLEWLSHFVEDSFTEYSGPNLTGTPTEKPAWLTGDR 158

Query: 150 PRNAAAIFNPGVVS--VPAKARSKRSRAVVSNWNNSLLLPLSPTTSSSESDINAEP---- 209
                A+         VPAKARSKR+R  +  W+        P++S S S  ++ P    
Sbjct: 159 KHPVTAVTEETCFKSPVPAKARSKRNRNGLKVWSLGSSSSSGPSSSGSTSSSSSGPSSPW 218

Query: 210 --------PQLVKKAPPKAVVTAKKKDSPE----GGVSPAGEERRCMHCATDKTPQWRTG 269
                   P +  + PP       KK S E    G +     +R+C HC   KTPQWR G
Sbjct: 219 FSGAELLEPVVTSERPP--FPKKHKKRSAESVFSGELQQLQPQRKCSHCGVQKTPQWRAG 278

Query: 270 PMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKE 298
           PMG KTLCNACGVRYKSGRL+PEYRPA SPTF    HSN HRKV+E+RR+KE
Sbjct: 279 PMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVIEMRRKKE 317

The following BLAST results are available for this feature:

BLAST of CmaCh05G005840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P69781	4.3e-64	50.72	GATA transcription factor 12 OS=Arabidopsis thaliana OX=3702 GN=GATA12 PE=2 SV=1	[more]
O82632	1.4e-51	44.01	GATA transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=GATA9 PE=2 SV=1	[more]
O49741	1.8e-41	40.91	GATA transcription factor 2 OS=Arabidopsis thaliana OX=3702 GN=GATA2 PE=2 SV=1	[more]
O49743	1.0e-36	41.91	GATA transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=GATA4 PE=2 SV=1	[more]
Q9FH57	3.8e-36	39.73	GATA transcription factor 5 OS=Arabidopsis thaliana OX=3702 GN=GATA5 PE=2 SV=1	[more]

BLAST of CmaCh05G005840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25830.1	3.1e-65	50.72	GATA transcription factor 12	[more]
AT4G32890.1	1.0e-52	44.01	GATA transcription factor 9	[more]
AT2G45050.1	1.3e-42	40.91	GATA transcription factor 2	[more]
AT3G60530.1	7.1e-38	41.91	GATA transcription factor 4	[more]
AT5G66320.1	2.7e-37	39.73	GATA transcription factor 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 225..275 e-value: 4.7E-18 score: 76.0
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 231..264 e-value: 1.7E-15 score: 56.3
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 231..256
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 225..261 score: 11.780279
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 230..277 e-value: 3.09541E-15 score: 67.3978
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 225..304 e-value: 7.5E-16 score: 59.6
IPR016679	Transcription factor, GATA, plant	PIRSF	PIRSF016992	Txn_fac_GATA_plant	coord: 12..318 e-value: 5.2E-77 score: 257.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..74
None	No IPR available	PANTHER	PTHR45658:SF43	GATA TRANSCRIPTION FACTOR	coord: 1..341
None	No IPR available	PANTHER	PTHR45658	GATA TRANSCRIPTION FACTOR	coord: 1..341
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 227..289

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G005840.1	CmaCh05G005840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003677	DNA binding