CmaCh05G004830 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G004830
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ATP synthase subunit alpha
Location	Cma_Chr05: 2274512 .. 2276225 (-)
RNA-Seq Expression	CmaCh05G004830
Synteny	CmaCh05G004830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCTTCTCCCTTTCCCTCAAGTCATACCTTAATTCCAAATTACAACAATGCCGCCGATATTTTCATATTTCCATATATACCCTTAGGGTTGTGCTACAATTACCATATTGGACAAAGGCATATTTTTCAAATTTATGTCGTGACTCGCAGCGTGGCAGAATATTAGAGACTGGAGAAAAGGCGATAGCAATAGCGACTGTGCAGGACAAATTCGTAAATAAAACGAAACTTTCGGGCAATTCATTGCCCCTCAGGTCGGTTAGTGCAAATATTTTTAATTTTTAAATTGGGTTTCAAAAGTTTGCCCTAATTGGTGACGTGTAGGGTTTTCTTTCTACCATTCCTTTGAGCGTGTATAAAAGGCGTCCGTTCTACCCATCAAAATCCCATCGGCATCTTCGACACCGCGCGAACAAGAGCCAAAGCTTCAGGATCAGTTTCTTCTCGTACCTCGACCTCCCACCACTGTAAGGCAAGAATTTTCGTTGTTTTCTTGTTTAAACAAACTTCACAACCTGTTCTTGTTGCTTTATCGGCCTTTGATTTTTAACTAATGTTTTCAATTCGTTGTTTTTGTTATTGTCGTAATCGATTATAAGTTATCCACGGTTCTTTTGTATCAAACATCTTCGATTTGACAAAATCTTCACGATCGGTATTTCGATTGTTGATTTTCGATGGAATTTAGTAAGTTTCTTGCCGCGTCGCTCAGATCTGTAGATTGACTTTTGTTTGTCGTTTGTCTGGTATATTTTTCTTAATTTTTTCCATTATTGGAATGAGAAATATGGTCGTCGCTTTAGATTGTGATTTATTCATGTAAAACTTCTGAGATCGATGATTGAATCTTATCTGTGAATTCGATATAGTATTCGTTCCATCTAGTATTTCCAATAGGCCTGGGATATTCGTTTTATTTTTTTGTGTTCAATTGTGTATTGTTTTTCTTACTTGTTTGTCATTTGAAAGCTTTCGATTATTTATTTTCTAGTTGTAAATGGTGGTAGAGTTTATATGTTGTTATGGTTTCGTGCATTTATCTAATACAAATCGTGGATGATGTTTCATGTGTCAAGTTATTAAAGCCTGATCCTTTGATTTATGTCGTCTTCAAAAACTCGTTCTATTTAATGTAAACATTGTTCAATCTTTCCTTTGCTTTTTGCTGGAATTAAATATCGGTCTATTGAGATTATGCAACTTGCTGTCATACGGTTCAGTTTTATATTTTAGAGGTAGGGACAACATTCGTGCGCGTAATTGGCACTTGTATGACGAAGTTTATTTTGACTGAAAACTCAAGTTCTGATGATCTCCTAATGAAATTTTGTTTGTTCTTCTAGATTTTAATTTCTCAAAGGTATTTTTCCCCCAACCTAACTCATAGGATAATCGTTCTTAATCCCCAGGAATTTGGCCATCTGGTCTGTTGCCTGTAGTTCAAAGTGGAGGGCGTTAAGTTTGAAACTCCTTTTATGTCTGAACGGGCCTCTCTCTTTTTGTCATCGATTGGATTGCTTGGAGAGTATTGTCCTACGTCTAGGAAAAAGAACAGCTGTGCTGAGACTATTGGCTGCATGCATCTTGAGTTGCTTGGAGGTCATAGAAAAGTACGTGATCTTGGTTTCTCTTTTATGCGGCCTTTCCCAGCTGCTCAAAGAACGTTAGGACCTTTTGAAGATACTGCTACTGCTACCTATCTTTTCTAA

mRNA sequence

ATGGTTGCTTCTCCCTTTCCCTCAAGTCATACCTTAATTCCAAATTACAACAATGCCGCCGATATTTTCATATTTCCATATATACCCTTAGGGTTGTGCTACAATTACCATATTGGACAAAGGCATATTTTTCAAATTTATGTCCGTGGCAGAATATTAGAGACTGGAGAAAAGGCGATAGCAATAGCGACTGTGCAGGACAAATTCGTAAATAAAACGAAACTTTCGGGCAATTCATTGCCCCTCAGGTCGGCGTCCGTTCTACCCATCAAAATCCCATCGGCATCTTCGACACCGCGCGAACAAGAGCCAAAGCTTCAGGATCAGTTTCTTCTCGTACCTCGACCTCCCACCACTATTTTAATTTCTCAAAGGTATTTTTCCCCCAACCTAACTCATAGGATAATCGTTCTTAATCCCCAGGAATTTGGCCATCTGTTCAAAGTGGAGGGCGTTAAGTTTGAAACTCCTTTTATGTCTGAACGGGCCTCTCTCTTTTTGTCATCGATTGGATTGCTTGGAGAGTATTGTCCTACGTCTAGGAAAAAGAACAGCTGTGCTGAGACTATTGGCTGCATGCATCTTGAGTTGCTTGGAGGTCATAGAAAAGTACGTGATCTTGGTTTCTCTTTTATGCGGCCTTTCCCAGCTGCTCAAAGAACGTTAGGACCTTTTGAAGATACTGCTACTGCTACCTATCTTTTCTAA

Coding sequence (CDS)

ATGGTTGCTTCTCCCTTTCCCTCAAGTCATACCTTAATTCCAAATTACAACAATGCCGCCGATATTTTCATATTTCCATATATACCCTTAGGGTTGTGCTACAATTACCATATTGGACAAAGGCATATTTTTCAAATTTATGTCCGTGGCAGAATATTAGAGACTGGAGAAAAGGCGATAGCAATAGCGACTGTGCAGGACAAATTCGTAAATAAAACGAAACTTTCGGGCAATTCATTGCCCCTCAGGTCGGCGTCCGTTCTACCCATCAAAATCCCATCGGCATCTTCGACACCGCGCGAACAAGAGCCAAAGCTTCAGGATCAGTTTCTTCTCGTACCTCGACCTCCCACCACTATTTTAATTTCTCAAAGGTATTTTTCCCCCAACCTAACTCATAGGATAATCGTTCTTAATCCCCAGGAATTTGGCCATCTGTTCAAAGTGGAGGGCGTTAAGTTTGAAACTCCTTTTATGTCTGAACGGGCCTCTCTCTTTTTGTCATCGATTGGATTGCTTGGAGAGTATTGTCCTACGTCTAGGAAAAAGAACAGCTGTGCTGAGACTATTGGCTGCATGCATCTTGAGTTGCTTGGAGGTCATAGAAAAGTACGTGATCTTGGTTTCTCTTTTATGCGGCCTTTCCCAGCTGCTCAAAGAACGTTAGGACCTTTTGAAGATACTGCTACTGCTACCTATCTTTTCTAA

Protein sequence

MVASPFPSSHTLIPNYNNAADIFIFPYIPLGLCYNYHIGQRHIFQIYVRGRILETGEKAIAIATVQDKFVNKTKLSGNSLPLRSASVLPIKIPSASSTPREQEPKLQDQFLLVPRPPTTILISQRYFSPNLTHRIIVLNPQEFGHLFKVEGVKFETPFMSERASLFLSSIGLLGEYCPTSRKKNSCAETIGCMHLELLGGHRKVRDLGFSFMRPFPAAQRTLGPFEDTATATYLF

Homology

[Close]

BLAST of CmaCh05G004830 vs. TAIR 10
Match: AT1G36732.1 (conserved peptide upstream open reading frame 19 )

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-05
Identity = 29/59 (49.15%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 159 MSERASLFLSSIGLLGEYCPTSRKKNSCAETIGCMHLELLGGHRKVRD----LGFSFMR 214
           MSE+ASLF SSI LLGEYCP SRKK++            +GG R   D    +GF FM+
Sbjct: 1   MSEQASLFQSSIRLLGEYCPISRKKST----------HKVGGLRFEEDITSCIGFQFMQ 49

The following BLAST results are available for this feature:

BLAST of CmaCh05G004830 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh05G004830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G36732.1	1.4e-05	49.15	conserved peptide upstream open reading frame 19	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G004830.1	CmaCh05G004830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
molecular_function	GO:0035639	purine ribonucleoside triphosphate binding
molecular_function	GO:0032555	purine ribonucleotide binding