CmaCh05G004690 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G004690
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RNA pseudouridine synthase 3, mitochondrial
Location	Cma_Chr05: 2163694 .. 2175272 (-)
RNA-Seq Expression	CmaCh05G004690
Synteny	CmaCh05G004690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGCCCCACTTCGCGCCAGTTGGTAGTAGGAAAGTTCTCCGTCGACACTAGAAAGGAGCTAGGGGACGGGAGTGAGCTCTGAAGCGTAGCATCATCTTCCATCACGAGCGAATCTGGAGACGTTGGGTATCCATATTTGATTTATAGCTTGAAGGCAGGCAAACCGACGCCCCACCTCCCGTCTCCCCTCCTCTCGCCTAGTAGTACTCGCACATCGACTTCAGTCGGTAGAGAAACAGGCGGGAGCAGCCAAAGGGGCACTTAATTTTGTTTACACTTTCCCCCTTCCATTAACGGGCGGAAGCGACCTGCAAGCATATTTGTCGGCATTCTCTCAATCGCTGATCATCTACGGAGGTAATTTATGGGTTGTTTTTCGTCTCTGTTATTGATTAGAATCAAAATTTCCCTGTTTAGTACCATAATTTAGGGGTTGTGTCCCCAGTATTCGTTTCTCTCTCACTCGGGAATCATCCATCAATTTTAGGATCAAACTACTAGCTGTCTAATCTTGCATAATTGATTGCCTGGTCTGCTCTAAAACTTGGCACACTTTCTCAGTCATTAAAATGATAATTAACTTCTCTGTCCGTTTTGATCAATGTTGTTGTGATTTACAAATGGCTGTGCTAAGCTTGATAGAAATTTAGCATATAAAAAAAGAAGTAAAGCTTCGAATCAGGCTGATTAGAGTATTTCATGTTTGCAACAAGTAGAGATTGAATGAAAATCTCCGAGGTTGAAAATAAGGGTCACTGTTGAAATTGAAATTAACACACTTGTACACAGGGAAATCGATTAAGCTACAAAAAAAACCACCACTTAGGGGCTGTTTTGCTTGAAAGATTGCAGGATTATGCGGCAGAGCATACGACGACATCTTTTACTTGCAGCCAGATACTACTCTAGAATTTCTCCTCCTCCACCTGCTTATGCCAGGCCTGTCATTAGAGTTTCCAACAACGTAGCGCAGTTGGGTAGTCCTAAAGAAGGCTCAAAGCCCCGGCAGCTCCTATCGCTGCCCCCATTTCCTGGCTACCCTTTGCCCAGGAAGAATCAGATTGGTTTCTCTGGGGAGTCAACTCATGTCACTGCCATAACATGGGTCAAGCATTACTTTGATGAAATTCATGATTCTGTAATTCAGTCCCATTTCAGAAAAGGTCTTGTAAGTAAGAACACTTACTCCTCTTTTAGCCAATTGGTCTTGTCCTTTTGTCTTTTTCCTGCTATATTTATAGTTTTGTTGGCTTTTTGTAACTTTTGTAATGTCGAGAATCTCCGTCATATTTTTGAGCTGTGAGATCAGTGCTAACTTGTAAGTTGTAAATACTAATGGGAACTTAAACTCTTCTTGCTTGTTTAAAATAGTTGAGTTCCATATATAAACTTACATTGCCACTGTGGGAAAAAGTACATTGGACTTGTTTTCTTTTGGAGTTTCAGTTGGTGTCCGCGGAAAAACTGAATTAATGACTTGCGTGTATATATGTTTAAGGATATACCACAACTTCAATGTTACTTATGAAATTAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTAGAAAAGGGATCGGTGGTTATCTATCCAATTCTGGGTTTAAATTTATCTTCCTTTTTCCAGGTCCAGGTGCAATGTCCACAATCAGGTGGCTTGGATGGAGAAGGAAATTTGAAACCTATGAGAAAGGTGTTGTTTCTTGAATAAATAGCCTATTATCTTATGGTTCATTTTTTAGAAGCTCCTGATATGTTGTTAGTGCGTATGTATTATCTGGTTTCATTTACTTATTGAAGTCATTCTTTGTTGGTCTTTAAGGCTATTAACTCATTACCATATGACTTTCAGATTAGGAGTAATGAGATTATGGAAACTGGGGCACGAGTCCATATACCTGTGTCCGTTGCAGAGATGAGGGTTTCTAGGAGATTTGACACTATACCAAGTGGCACATTGCACCCAAACGCGGATGAAATCAAGTATTTGCAAAGACTTGTCAAGTACAAGGCAAGTATTGAGTTTAACTTGCATTCTCCTCTTTGCTGTTTGCTGCAATTTATGCATCTCCCAGTGTTTTATCCATTGACGTACAAGAAGCAGTTGCTATATACTTGGTATGGGAAGATCCACATAGATATACTCATTTTCTTATGTACAATCAACAATGAACCTTGGTTGAGATTGATGAATGATTAATTCCCTTCTCTCTATTGCTTCATTTTATCCTGGCATGTGATTTCTGTTGTATGCTAAACATGATTTCATTTGATTGTTTATTTTGTAAATTTCAGGATTCTGCTATTCTCGTGTTAAATAAACCCCCCAGACTACCCGTCAAGGTTTACCTCGTAATCTCTTATAGTTTTCTATTTTATTTCTGGTGGTCGGTGGGAAGGTGGGGTGGGAGGTAAAGTAGGTGCTCTGATATTTTGAAACAATTATGGTTTTGACAGGGGAATCTTCCAGTTCATAATAGTATGGATGCGTTGGCGGCTGCTGCATTATCTTATGATTATGATGACGGTCCCAAGTTGGTAAGCTTCTTGTTCACGTTCAAGTAACTTATGTAGATATTGTTATTAAAAGACTCTGTAATGAGAAAGAAAACAGCTAAGTAATTATGTTAATGTGTCATTGATGGATACTTAAGGGAATAAGAAACGAAACTTTTCATTGATGAACTGAAAACGACTAATACTCAAAGGTACAAACTCCACATATGAGTGAAAGAAAGAAAACAAAAAAATCATAAAAAGTAAGTAATCTAATGAGCATAACAAAATAATTGTCAACCAAAGAAATCCCAAATACAGCTCTAGAAACAAAATCAAGACTAAAAACTGACAACAACAACACTTGAAGGCAGCGGCAAGAAACCAAAAGGCCGAGAATACCAAGAACCCGAATCCAAGAAGGAAAACAACCAGGAGGCAAACAAAGAGTCTGAAACTACGAGACAAGCAAAGAGAAAACTCTACACTGCACTGGACACATTAAGCACTCTTCCAGAAGGAAACAAAACCGTGATATGCCAAGGGTAGGGACAAAATCAAACCTGAACACGGTTGTCATCAGCAAGAGTAGGCCGCAAGAAGTAGAAATATAGAGAATCAAATTTTCTTGGAACTGAGGAAGGATGAAGTGAAAACTCGTTGTCATAGTCCCGAAGTAAGGAAACTAGAGCTTTTGAAAACAATTTTCAGAAAAATAATTCAAGGTGTTATTTGTGTTGGGCAAGATGAACTCCACACTACTCACACTAATCTCTGAATCGGCATCCCAATCATCATTACCTAAAAGGAGAATTAAGAAGCTAAAGATCTTCATGAAATGTGTTATGGGAATAAGATGGGTTGATGCCGCTGCCAGGGCGTTGTAATTCAATTGGAAATCTTCGTAATGTACAATAAAAGTACTTGCTACTTGTAGCAATTACTAAGGTATGTATTTCCTAGACATGGGATAAATTTCGATAGATAAAGCTCCTTTTTAGTGGGTTTTTCTTCATTTTGTATAGCCCGAAGCTTGGGTTTTCATTGAAAAGTTTATCCCAACTGAAGGAAGTTACACAGAAATTAAGTTTCCTCTTTATTCATTTCAAGAATTGTTTATTCCTTCAAAATAAGGACGTAGAAGCTAGTGTTATTTCTTATTTTTCAACCTGTTTCATTTTTGGTTGCGTTGCTCTATATTTAATGCTCTTCCTCTGTCTATTCTTATGGATGCACATTTAGGTTCACCGTTTGGATAGAGAAAGCAGCGGGATTATCTTGATGGGGAGAACAAAGGAAAGTGTAGCCCACCTACAATGGCTATTTAGCAATATAAGAAATGCGAAATCTTCATGTAAGGTGCTTAATAAAAACTGCATTGAAGCTTAAACGAAAACAAAGAAGAGGTTTATCTTTAAGATGTTTACCTAGTATAACTACGGCTCAAAAATGTTCTAAAATTTCTAACTGTTAATAGTTTACAATATGCTCAACAATGATTTCAGGCTTGGGACGAGGCGTGTAATGCAACATATCAAAAGTATTGGGCGTTAGTAATTGGTTGCCCCAGAGAAAGAGAAGGCCTAATCTCGGCTCCCTTGTCAAAGGTTCTCTCTCTCTCTCTCTCTCTCTGGGATCAATGTTAATGATTCTCAGTCTTTTCAGGTGCAGTAATGTACTCTGGAATTGTTAATAATTAGAGATCAGTATTTTCTAATAAGTTGATAATTAGACTACAATCATATGGTTGGCAGTTGGTTTATATGTCGATCGTTACGCCTTTAGAAACTGTTCAACATATCTTCAAGAACTTGAGAATATGGCCCAAACAAGTTTTTCAAGGAACATTTCATGTCGTTTTACTTGTGTTATAATGTTTGTAGGTGCTTCTTGATGATGGGAAGACCGAGAGGGTTGTCTTGGCAAACAAAACATCCTTTGAAGCTTCTCAGGAGGCAATCACTGAATATCGTGTGCTTGGTCCCACAATAAATGGTTGTTCATGGATTGAACTATGCCCACGCACGAGCCGAAAGCATCAGGTACTTCAAGCTCTCTCGCTTTTCTACGAACAGACTCATTCAAATTTATGCATGAAAATCTTAGGGGAAGCTATCCTTTTGATCCATAGGTTTTTAGTCTAGTTTTGTTTTGGTCTCTAGGTTTCAAAATGTTACACTTTTACTCCTTAGTTATGAATTTAATTTTCATTTGATCTAGTTTTATTGAAGTTTAATTTTCATTTGGCCTCTAGGTTTCACCATTTTACCCATTTACTTTCCGTTTCCATTAATGTTCACTTTTGATCTTTGATGTTAACTTCTAGTTAATTCATTACTCGTTAACACGAAAAGACCAAAATGAGTATTTAATGGAGATAAAAGTGTAAATATGGTACCAAAGGACCAAATGGAAACAAAAACTCAAAGATAAAAATGTAACATTTTGTAATCTAGAAACCGAACGAAAATTACTCGGGTAGAAGTGAACCATTTTGAAATTCAAACGAATAGAAATGATATTTTTTCCAAATCTTTAAACTGTATGATTTGCCATCTTTCAGCTACGGATCCATTGTGCTGAAGCTCTGGGCACACCCATTGTTGGTGACTACAAATACGGTTGGTTTGTACATCGGACGTGGAAACAAATGCCCCGGGTCGACATCGAGCCAATAAGTGGGAAGCCATACAAGTTGCGAAGGCCGAAAGGGTTGGATGTGCAAAAGGGGAGTGTTTTATCCAAGGTGCCCTTGTTACATCTTCATTGCAGAGAGCTTGTTCTTCCCAATTTAGCGAAGTTCCTTAATGTTTTGGATGACAAAAGGTCGATCAGCCACCACCGGGTATCTAACTTGAACTCAGATCTCTTACGTTTTGTAGCCAGAATGCCGTCCCATATGAGAATTAGCTGGAATTTGATGTCTTCCTATTTAGTATGAGTAACTTAGAGTTATCATAGGTAGATTGTAATAGGATTATTTATTCATTTGTTGTTTTTATTTTTCGGTTAAAATATATATATTTAGCGAGTGAACTTCTCTTGATCACTTTCTCACACTCAATCGCACAGTTTTGAGACTCGAAACAATTTGAGAAAGCAATGTTTGGGATGTCCTAATTATGAAGTTGACTTGTGAGTTGATTCTCGATAAGTATGTTCGAGCGAAGGTTGTGACATCCTAAGAGATGGTCCGACGAAGAGAAAAAAATCGTAATGGGATTTAAGTTCCCCTTATAAATTATTACTCCATACAATTCGAATAGTACGACTATGTCACAATACATGAACAATACACTGTGTTTATTTTATTTATGGTTAATTGTATTATTTATATTTTAAAAATAAATCATTCTTTACTTATTTGAAATTACATAATATTTTTTTTTTTTTACTATTTTAATGATTATAATAACTAATAAATAATTTAAATGGATGCACTTATGATTTAATTATTAATTTAGAATTTACTTAATCTAGGAAAAATTATCATAAAAGTAAAATACAAACTTACTATATATACTTTTAAGATTTAAATTTATTAATTTTAAAAATTTAAGTGATAAAATAGTAAAGTTTAGGAAATATAAATGGATAATTGTTGGTATTATTATTTATTTTTATATTAAAAATTAAATTGAATTTTATTATTATTTGGGAAAGGGGAAGGAAACAAAAATTAGGCCCGCGGAATCGAAGCGTTTTGAAAAAATCGGAGCTTTTTACGGCGCACGAGGAAAGACTACTTCAAAGCTTTCAAATCGCGAAGCATTTCCATCCAACAGAACGGCACTTTTACCATTTTACCCTTACCCGTTGATCTCAACGGTCATCTTCCCCTCCATATATATTTCCTTGGTGCTGAATCCACCGGATTCTCCCAAACCCTTCTGGACCCACTGTTTTCCCTTTTGACCATCAAATCCCCTCCCCTGTTTTGACCCAACCCCACCGCCAGATCCGCTTCAGCCGCAACCTCCTCCATCTCGGTTCCTCTCCTTTCTGCAACCAACTACCTCTCCCCAACCCTAACAATCGACAATCATCGCCACTGTTCCATGGAGTTTGAGATCGTCTTTGACTGTCCATTCTGAGAGAGATTGACAATGGCGGAATTTTTCCTCTGCTGTAGCGATGTGCAGGATTTTGCATTCGTCTCAAAACGCTGAGCCCGACGGACGATAGTTTTTGTATACGTATATATTTGTTTAGTATGTCTGATTTGGTGGCCCGCACTGGACGGCATCAGCAGCGGTACGATGCCGGTTGTCGCCTTGTTGCTGGGTACATTCCCACCAATATATTATTTATATATTTACATTTTTAATATTCGTAGACTCCAGTGATTTGATGTTTATATATCTGTGTATCTATAAGTCGTTTTCGTGGACCATTCTTGTCAAAGGTTGGTGAAAATGAGGTTGTCGGCAATGTCATTTACGTTTCTTTTTACTACCCTTGTGGAAATTGACTGCTTTGATTTTCACTGTGGTTCTTGCTTGGGTATCGGTGGTTTGTGATTCGTTGTTGGGTTCTTTTATCGATTAGGGGTTTCGAGAAGTCTCGATTTGGATCTGAGAATTTATTGATATATGACGTGTAATACTGGAAATATGATTGGTTGGCTGGTGAGTCCTAATTTCTACTTTGAGGCTCTTACTACACATCTCCTGTGATGATGTAGATTATTCACAATTTATCACTCTCTTTTATGCTTCTTTAATACTTTCTTGTAGTTAATAAGTGATGGTTCATTTGAAATTTAACTAAATTTCCCTTAAGAATTGCATTATACTCTGGGGCTACTCCTGTACATCTCCTATGACGTTGTGCATTATTCACAATTCTGAAGTTTTTATGTTTTTTTTTCTTTAACTAAAATGCAATTGATGCATGAACTTCATGTCTAGTCACAAGGTTAACTTATGACAGGAATGCCTCGCCTGCATTTTCTGTTGATGCTAATTTTGCTATTCTTTTGTAGGTGTATTCCTTTTAGGTATAGAAGTTCCGATGGCAGCAGTGATGAAGTTTCAGATAAAGTAGTGGAGGTGCTTATGATTGACACACCTAGTGGACCGGGCCTTTTGTTCCCAAAGGTATAAGTTGTCCCCCTAACACTACACCCGAACATGTTATTTATTCCAAAATGAGGTTGCTTGCAACTTTTCAAATTTAATGAAAAGTGCTTGTTTGTTGTTAAAAAAAGGAAAAAAAAATGAGAATACATAAATTTGATTTGAGTTTTTTACCATATATAGTGTCATAGTTTGCAAAATTTTCTATGTCGGGAACTTAAGGTTGAACTTCTGCTTTTTTGCTTCTCTCATATGAAGTATACAAGCTTATTTTATCTCTAATATCAGCATTTTCTTTAAAAGGGAGGCTGGGAGAATGATGAGACGGTGGAGGAGGCTGCTGTAAGGGAAGCTATTGAAGAAGCGGGCGTTCGTGGTCAACTTATGGTGAAATAGTACTTTAATTTAATGCTTGAAATGAATTTTCTTGAGCGTCAAAAGTTTTTATTGTACTCTATAATAGTGATAGCTTTGTTCTCATTGTTTTTTTTGTGAAAATTAAGGTTTTCCCATCTAACATATATAAAGAACATGGTTGAAATAGGAGTTTTTTAGAGTATTGTTTTTAATACCTTTTCCTTTGATTTTTTTTTTGTTTTTTTGTTTTTTTTTTTGTTTGATGTTGTTGTTGTCCTTGTTGTGAAGGAGTAATGAATTTTTTTAACTCATCATTAGTAGAACAGATAGAGTTAGGATGAAGACTAAAGGTATTGGGTTGTGACTGATAAGAAACTAAGGCTACCAATCCACTTCGTATATCTTTCTTTATCAAAACAATTTTTAATTGGTGTTTCTATGTGAGTTACTTTACATTTTTTTCCTTTGAACTAGTACCTCATTGACTTCGTGGCTATCCATTTGATATTTGACCGGTAGTTTCATGAGTCATGAAAGTTGCAATTTGCTTTAATTTAATGAGACAATGTGGGATTTTGCTGGTCTATGGTCACCAAGTCTAAGTCCAAAGGTGGGTAATCCTAGGGCTAAAAGCATAGAGATTTTGCGAGTTTCAGTGACAAATCTAGAGGAAGCATTATTGATTGTTAGTTGTTGCCTTGGTGATGATTACTTTAAGGTGTTGGTGTTGTTTACATCTAGCCAAAAACTTCTAATAGGACAACAAAGATTTTGGGTTGTCCTTTGGGTTGATAAAATCTTATATATGAGTGGTATCTATGCAGAAACTATGAGGGTTATGAATCACAAATCAAAGTCCATCACTATCCATCCTTAAGGCTTGTATACTAAGCTTCTATAAGGAAGATTGGAGAGTTAGTGAAAGTACTTCCATTAATTCAACAATATTAGTTTCCTCTAAGTTTAGTAGATTTAAAATATTTTTACTATTTTATCGTCAAGGGGAAAGGAAAACTCCTACATCTACCTCCCCTGAAAGTTCTTGATCCACCACTCTGGAAAAGCATCTTTTTGGAAAGAAGGAAACTTTGCTGCTAGAAGTAGCATAAAGAACACCATTAACAGTATATCCTTGGTAATTTAAATTTGGAAGGACTAAAGGAGTGATGACTACTTTGCTTCCCGAAAACAATGCCGGTCAGAAGAAGCAGATCAACTCAAAGGCCCAGGAATTTTTGGTGGGAGATATGAAGTGGACTTCCAGGAGGATCTTGACCCATTACGGTGGCTGGTAGATATGCGTAAAAGCGAACTTCAGGGTAACTGGAGAGCTATTTTCACTCTGAGAAAAAAGTTTTCTTGGAATGAAGTTTTTAAAAAGCTGTTTTTGGTTTTGGCTGGAAAGAAATGCTATAGATTTTGCAGGGACAAGAGAAGTGGAAGATAGTAAGATTTAATGATTTTCTTTGCTGCTCTTTAAAGAATCTTCTGTGTTTATTACAACCCCTTTTTGATCCACACAAGTTGGAGGGTTTTTTTAGACTCCCTTACTTATAGGATGTTTTGGTTTAGCCGTTTTACCTCATTTTGAATATCAGAGAGTACTTCTTGCGAAAGTAAAATATAACTTCTATATTTACATTTTAACATGGCTTGTATTGCATAGAAAGTTCACCTAACTGTGGTTATTTGATTGTCATTCTTCCTTTATTTATTTATTTCCGTCATAAATTAGTTTATATGTCAAACTTATTGTATAGTAGTTTTATCTGTGTAAACTATTTGTAGATTGTTTAATGTTATAGCTCAATTGAGACTACTTGCATTATTTGCGAAGCATGCCAGCTTAGGTTACTACAATGGTCATATTTCTTTTGTATTTCCTTGGCTAGGGGTGAATACCTCGTTATCCCCTTTTTTCTTTTATCTTTCTGTTTTATTTGCTGAAATTATTTCTTAGAAAGTTGCATATCCAATAGCATTATCTTTAGACAGAACCCTCCAACCATATGGCTAATGGATATAAAAGATGACTCAACATTTGGAGGTCAAAGTAGAACTTCTTAGACTTTACCTGGTTTCATTTAATGTTATAATGTTTCAAATGTTTTGTTGTTTTATGTTAATTGAACGTCCAAATTAGATAATTATAAGGAGGAATAAGCTTGGTCATGTTCTTTTCTGTTATATCTACACTTCTTTGTGATTGGGTAATGTTGCTGATCCATTCCGTGGCGCGAAATCCCTCATTGGCTAAACAATCATTTGGATGACTGTTAGGATTGTTTGGAGTTGTCTTACCATGGATGTGTGTGGCTGGGCAATTGTTTGGTTTCTGTTCTTTGGAATGTGTCATGGTCTCTATCTCTTGCTGTTTAGCAGCTTCTTTGTTCATTGGCTTGTTTTATGGAAAAAAAAAAAAAAGAAAAAGAACTCTTTATGGTGTAATGTTGAGTTTGCTTCCCCTTTAGATTCAAGCCTGCGGTACTTGAAAAGATGAGGAGATAATCAAAACGGGCCAAGGCCAGGCCATAGTGGGGGCAAGGGGGTGTCCCCCATGCCAAAGGGATATCAATCAAAAGGCTTGAGGGTGTCCCCCATGCCTAAGGGATATCAAACAGAAGGCTTGAGGGTGTCCCCCATGCCTATTCTTTGATATCCCTAAGTAAGTGCAGTTGTTAAAGTTGTCAAAGGGATATCAAACAAAAGGCTTGAGGGTGTCCCCCATGCCTATTCTTTGATATCCCTAAGTAAGTGCAGTTGTTAAAGTTGTCAAAGGTGATGTGTGAAGCAAAATAAGTGTGGCTTAAAAGTTCATAAATGAAACACCTCTATTAGATAGAGGTTTTCACACTTGGGGCAGTTACGTCTCTAAGGAGATGCACGGCTGCTTTTCTCTCTTTGTTGTTTTTGTATTTGTTTTCCTCCCATTTAGATTAGCCTGACACTAACTCTCCGTTGAAATCTCGGTTTTCAGGGATTCTTAGGAGACTATCACTTCAAGAGTAAAACACAGCAAGATGAGTTTACTCCGGACGGATTGTGTCGAGCAGCTATGTATGCTTTATTTGTGAACGAGGAGCTTGAGTCATGGCCGGAGCAGGACACGAGAAACAGAAGTTGGGTGACCATACCTGAGGCAATTGAAAACTGCAGGCACGCATGGATGAGGGATGCCCTTGTCAATGGCTTCAACAAATGGCATGCAGAAAACATGAGCGATGAATAACTTGAATCTTGAAATGTATGCACATTACGAAGTATATGGTGCATATGAACAAGTTATCTTTATGGATTGTTTTTTAGAGTCCCTTTTTCCCCTTCGCCAGCAAATCAAATCAAATCAAATCATGAAGAAATCAAGCAGTAGAACACTAACACTGATGATGTTGAAGGATTACATAGGCAACGTTTTGGTTGCTCATTTATTATAATACACTTCCGTATTAGTGACCCCTGATGTTTTTTATTCGGAGGGAATTCAATCCTTGTTTAAGCACTCCTTCAAGCTTCCTTGAAAGCTTTTACAAATGTATTTCAAATTTTCTTGTTCATTTATTACAAGTCTGATGAATTACATGCCATTTTTCAATATGATGGTATATATAGAGGGATATGAACTCGGAAAATTGCG

mRNA sequence

CCGCCCCACTTCGCGCCAGTTGGTAGTAGGAAAGTTCTCCGTCGACACTAGAAAGGAGCTAGGGGACGGGAGTGAGCTCTGAAGCGTAGCATCATCTTCCATCACGAGCGAATCTGGAGACGTTGGGTATCCATATTTGATTTATAGCTTGAAGGCAGGCAAACCGACGCCCCACCTCCCGTCTCCCCTCCTCTCGCCTAGTAGTACTCGCACATCGACTTCAGTCGGTAGAGAAACAGGCGGGAGCAGCCAAAGGGGCACTTAATTTTGTTTACACTTTCCCCCTTCCATTAACGGGCGGAAGCGACCTGCAAGCATATTTGTCGGCATTCTCTCAATCGCTGATCATCTACGGAGATTGCAGGATTATGCGGCAGAGCATACGACGACATCTTTTACTTGCAGCCAGATACTACTCTAGAATTTCTCCTCCTCCACCTGCTTATGCCAGGCCTGTCATTAGAGTTTCCAACAACGTAGCGCAGTTGGGTAGTCCTAAAGAAGGCTCAAAGCCCCGGCAGCTCCTATCGCTGCCCCCATTTCCTGGCTACCCTTTGCCCAGGAAGAATCAGATTGGTTTCTCTGGGGAGTCAACTCATGTCACTGCCATAACATGGGTCAAGCATTACTTTGATGAAATTCATGATTCTGTAATTCAGTCCCATTTCAGAAAAGGTCTTGTCCAGGTGCAATGTCCACAATCAGGTGGCTTGGATGGAGAAGGAAATTTGAAACCTATGAGAAAGATTAGGAGTAATGAGATTATGGAAACTGGGGCACGAGTCCATATACCTGTGTCCGTTGCAGAGATGAGGGTTTCTAGGAGATTTGACACTATACCAAGTGGCACATTGCACCCAAACGCGGATGAAATCAAGTATTTGCAAAGACTTGTCAAGTACAAGGCAAGTATTGAGTTTAACTTGCATTCTCCTCTTTGCTGTTTGCTGCAATTTATGCATCTCCCAGATTCTGCTATTCTCGTGTTAAATAAACCCCCCAGACTACCCGTCAAGGGGAATCTTCCAGTTCATAATAGTATGGATGCGTTGGCGGCTGCTGCATTATCTTATGATTATGATGACGGTCCCAAGTTGGTTCACCGTTTGGATAGAGAAAGCAGCGGGATTATCTTGATGGGGAGAACAAAGGAAAGTGTAGCCCACCTACAATGGCTATTTAGCAATATAAGAAATGCGAAATCTTCATGTAAGGCTTGGGACGAGGCGTGTAATGCAACATATCAAAAGTATTGGGCGTTAGTAATTGGTTGCCCCAGAGAAAGAGAAGGCCTAATCTCGGCTCCCTTGTCAAAGGTGCTTCTTGATGATGGGAAGACCGAGAGGGTTGTCTTGGCAAACAAAACATCCTTTGAAGCTTCTCAGGAGGCAATCACTGAATATCGTGTGCTTGGTCCCACAATAAATGGTTGTTCATGGATTGAACTATGCCCACGCACGAGCCGAAAGCATCAGCGATGTGCAGGATTTTGCATTCGTCTCAAAACGCTGAGCCCGACGGACGATAGTTTTTGTATACGTATATATTTGTTTAGTATGTCTGATTTGGTGGCCCGCACTGGACGGCATCAGCAGCGGTACGATGCCGGTTGTCGCCTTGTTGCTGGGTGTATTCCTTTTAGGTATAGAAGTTCCGATGGCAGCAGTGATGAAGTTTCAGATAAAGTAGTGGAGGTGCTTATGATTGACACACCTAGTGGACCGGGCCTTTTGTTCCCAAAGGGAGGCTGGGAGAATGATGAGACGGTGGAGGAGGCTGCTGTAAGGGAAGCTATTGAAGAAGCGGGCGTTCGTGGTCAACTTATGGGATTCTTAGGAGACTATCACTTCAAGAGTAAAACACAGCAAGATGAGTTTACTCCGGACGGATTGTGTCGAGCAGCTATGTATGCTTTATTTGTGAACGAGGAGCTTGAGTCATGGCCGGAGCAGGACACGAGAAACAGAAGTTGGGTGACCATACCTGAGGCAATTGAAAACTGCAGGCACGCATGGATGAGGGATGCCCTTGTCAATGGCTTCAACAAATGGCATGCAGAAAACATGAGCGATGAATAACTTGAATCTTGAAATGTATGCACATTACGAAGTATATGGTGCATATGAACAAGTTATCTTTATGGATTGTTTTTTAGAGTCCCTTTTTCCCCTTCGCCAGCAAATCAAATCAAATCAAATCATGAAGAAATCAAGCAGTAGAACACTAACACTGATGATGTTGAAGGATTACATAGGCAACGTTTTGGTTGCTCATTTATTATAATACACTTCCGTATTAGTGACCCCTGATGTTTTTTATTCGGAGGGAATTCAATCCTTGTTTAAGCACTCCTTCAAGCTTCCTTGAAAGCTTTTACAAATGTATTTCAAATTTTCTTGTTCATTTATTACAAGTCTGATGAATTACATGCCATTTTTCAATATGATGGTATATATAGAGGGATATGAACTCGGAAAATTGCG

Coding sequence (CDS)

ATGCGGCAGAGCATACGACGACATCTTTTACTTGCAGCCAGATACTACTCTAGAATTTCTCCTCCTCCACCTGCTTATGCCAGGCCTGTCATTAGAGTTTCCAACAACGTAGCGCAGTTGGGTAGTCCTAAAGAAGGCTCAAAGCCCCGGCAGCTCCTATCGCTGCCCCCATTTCCTGGCTACCCTTTGCCCAGGAAGAATCAGATTGGTTTCTCTGGGGAGTCAACTCATGTCACTGCCATAACATGGGTCAAGCATTACTTTGATGAAATTCATGATTCTGTAATTCAGTCCCATTTCAGAAAAGGTCTTGTCCAGGTGCAATGTCCACAATCAGGTGGCTTGGATGGAGAAGGAAATTTGAAACCTATGAGAAAGATTAGGAGTAATGAGATTATGGAAACTGGGGCACGAGTCCATATACCTGTGTCCGTTGCAGAGATGAGGGTTTCTAGGAGATTTGACACTATACCAAGTGGCACATTGCACCCAAACGCGGATGAAATCAAGTATTTGCAAAGACTTGTCAAGTACAAGGCAAGTATTGAGTTTAACTTGCATTCTCCTCTTTGCTGTTTGCTGCAATTTATGCATCTCCCAGATTCTGCTATTCTCGTGTTAAATAAACCCCCCAGACTACCCGTCAAGGGGAATCTTCCAGTTCATAATAGTATGGATGCGTTGGCGGCTGCTGCATTATCTTATGATTATGATGACGGTCCCAAGTTGGTTCACCGTTTGGATAGAGAAAGCAGCGGGATTATCTTGATGGGGAGAACAAAGGAAAGTGTAGCCCACCTACAATGGCTATTTAGCAATATAAGAAATGCGAAATCTTCATGTAAGGCTTGGGACGAGGCGTGTAATGCAACATATCAAAAGTATTGGGCGTTAGTAATTGGTTGCCCCAGAGAAAGAGAAGGCCTAATCTCGGCTCCCTTGTCAAAGGTGCTTCTTGATGATGGGAAGACCGAGAGGGTTGTCTTGGCAAACAAAACATCCTTTGAAGCTTCTCAGGAGGCAATCACTGAATATCGTGTGCTTGGTCCCACAATAAATGGTTGTTCATGGATTGAACTATGCCCACGCACGAGCCGAAAGCATCAGCGATGTGCAGGATTTTGCATTCGTCTCAAAACGCTGAGCCCGACGGACGATAGTTTTTGTATACGTATATATTTGTTTAGTATGTCTGATTTGGTGGCCCGCACTGGACGGCATCAGCAGCGGTACGATGCCGGTTGTCGCCTTGTTGCTGGGTGTATTCCTTTTAGGTATAGAAGTTCCGATGGCAGCAGTGATGAAGTTTCAGATAAAGTAGTGGAGGTGCTTATGATTGACACACCTAGTGGACCGGGCCTTTTGTTCCCAAAGGGAGGCTGGGAGAATGATGAGACGGTGGAGGAGGCTGCTGTAAGGGAAGCTATTGAAGAAGCGGGCGTTCGTGGTCAACTTATGGGATTCTTAGGAGACTATCACTTCAAGAGTAAAACACAGCAAGATGAGTTTACTCCGGACGGATTGTGTCGAGCAGCTATGTATGCTTTATTTGTGAACGAGGAGCTTGAGTCATGGCCGGAGCAGGACACGAGAAACAGAAGTTGGGTGACCATACCTGAGGCAATTGAAAACTGCAGGCACGCATGGATGAGGGATGCCCTTGTCAATGGCTTCAACAAATGGCATGCAGAAAACATGAGCGATGAATAA

Protein sequence

MRQSIRRHLLLAARYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPGYPLPRKNQIGFSGESTHVTAITWVKHYFDEIHDSVIQSHFRKGLVQVQCPQSGGLDGEGNLKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVKYKASIEFNLHSPLCCLLQFMHLPDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDRESSGIILMGRTKESVAHLQWLFSNIRNAKSSCKAWDEACNATYQKYWALVIGCPREREGLISAPLSKVLLDDGKTERVVLANKTSFEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQRCAGFCIRLKTLSPTDDSFCIRIYLFSMSDLVARTGRHQQRYDAGCRLVAGCIPFRYRSSDGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGQLMGFLGDYHFKSKTQQDEFTPDGLCRAAMYALFVNEELESWPEQDTRNRSWVTIPEAIENCRHAWMRDALVNGFNKWHAENMSDE

Homology

[Close]

BLAST of CmaCh05G004690 vs. ExPASy Swiss-Prot
Match: Q5XET6 (RNA pseudouridine synthase 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g78910 PE=2 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 2.1e-127
Identity = 227/367 (61.85%), Postives = 285/367 (77.66%), Query Frame = 0


Query: 8   HLLLAARYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPGYPLPRKN 67
           +L +  R YSR++PPP +    VIRV+NNVA LG PK+G  PRQL+SLPPFPG+PLP KN
Sbjct: 12  YLTVLIRRYSRVAPPPSS----VIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKN 71

Query: 68  --QIGFSGES-THVTAITWVKHYFDEIHDSVIQSHFRKGLVQVQC--PQSGGLDGEGNLK 127
               G  G+S  HVTAI+WVK+YF+EI+D  IQ+HF KGLVQ++    +    + E    
Sbjct: 72  AGADGDDGDSGGHVTAISWVKYYFEEIYDKAIQTHFTKGLVQMEFRGRRDASREKEDGAI 131

Query: 128 PMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVKYKASI 187
           PMRKI+ NE+M+ G ++ +PVS+AEMR+S+R+DTIPSGTL+PNADEI YLQRLV++K   
Sbjct: 132 PMRKIKHNEVMQIGDKIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQRLVRFK--- 191

Query: 188 EFNLHSPLCCLLQFMHLPDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPK 247
                             DSAI+VLNKPP+LPVKGN+P+HNSMDALAAAALS+  D+GP+
Sbjct: 192 ------------------DSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGNDEGPR 251

Query: 248 LVHRLDRESSGIILMGRTKESVAHLQWLFSNIRNAKSSCKAWDEACNATYQKYWALVIGC 307
           LVHRLDRE+SG+++MGRTKES+ +L  +FS+ +   SSCKAW++AC A YQ+YWALVIG 
Sbjct: 252 LVHRLDRETSGLLVMGRTKESIDYLHSVFSDYKGRNSSCKAWNKACEAMYQQYWALVIGS 311

Query: 308 PREREGLISAPLSKVLLDDGKTERVVLANKTSFEASQEAITEYRVLGPTINGCSWIELCP 367
           P+E+EGLISAPLSKVLLDDGKT+RVVLA  + FEASQ+AITEY+VLGP INGCSW+EL P
Sbjct: 312 PKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKINGCSWVELRP 353

Query: 368 RTSRKHQ 370
            TSRKHQ
Sbjct: 372 ITSRKHQ 353

[Close]

BLAST of CmaCh05G004690 vs. ExPASy Swiss-Prot
Match: Q0J4D4 (RNA pseudouridine synthase 3, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0520100 PE=2 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 7.8e-111
Identity = 206/377 (54.64%), Postives = 266/377 (70.56%), Query Frame = 0


Query: 6   RRHLLLAARYYSRISPPPPAYARP-VIRV-SNNVAQLGSPKEGSKPRQLLSLPPFP---- 65
           RR +  A R+ SR++PP PA A P V+RV  +NVA+LG PK G +PRQLLSLPPFP    
Sbjct: 5   RRRVGAAVRWLSRLAPPAPAEADPVVVRVDGSNVARLGKPKPGPRPRQLLSLPPFPGGGD 64

Query: 66  GYPLPRKNQIGFSGESTHVTAITWVKHYFDEIHDSVIQSHFRKGLVQVQCPQSGGLDGEG 125
           G PLP +     +     VTA++WVKHY  ++   V+Q+HF K LV  +C      D E 
Sbjct: 65  GDPLPGRK----AAAPRRVTAVSWVKHYLADVPQEVVQAHFNKRLVYSECS-----DHEV 124

Query: 126 NLKP-------MRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYL 185
           +++        ++KI+ N++ME G R+H+PVSVAE  + +R++TIP+ TLHPN DEI+YL
Sbjct: 125 SVETIKSQKHHLKKIKHNDVMEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYL 184

Query: 186 QRLVKYKASIEFNLHSPLCCLLQFMHLPDSAILVLNKPPRLPVKGNLPVHNSMDALAAAA 245
           +RLV +K                     DSAILVLNKPP++P+KGNLPVHNSMD LAAAA
Sbjct: 185 RRLVIHK---------------------DSAILVLNKPPKVPMKGNLPVHNSMDVLAAAA 244

Query: 246 LSYDYDDGPKLVHRLDRESSGIILMGRTKESVAHLQWLFSNIRNAKSSCKAWDEACNATY 305
           LSY  ++GPKLVHRLDRESSG++L GRTKES   L WLF+++  AK++ + W+ AC A  
Sbjct: 245 LSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTSVNLAKTNSQVWNAACEAYM 304

Query: 306 QKYWALVIGCPREREGLISAPLSKVLLDDGKTERVVLANKTSFEASQEAITEYRVLGPTI 365
           Q+YWALVIG P+EREG+ISAPLSKVLLDDGK ERV+LA+ +  + +QEA+T YRV+GPTI
Sbjct: 305 QRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAYRVMGPTI 351

Query: 366 NGCSWIELCPRTSRKHQ 370
           +GCSWIEL P T RKHQ
Sbjct: 365 HGCSWIELRPLTGRKHQ 351

[Close]

BLAST of CmaCh05G004690 vs. ExPASy Swiss-Prot
Match: Q9LHK1 (Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NUDT16 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.0e-70
Identity = 121/170 (71.18%), Postives = 140/170 (82.35%), Query Frame = 0


Query: 397 MSDLVARTGRHQQRYDAGCRLVAGCIPFRYRSSDGSSDEVSDKVVEVLMIDTPSGPGLLF 456
           M DLVARTGR QQRY+ G RLVAGCIPFRY +SD   +  S KV++VLMI + SGPGLLF
Sbjct: 1   MCDLVARTGRLQQRYEDGSRLVAGCIPFRYVNSDKDGNSESGKVIQVLMISSSSGPGLLF 60

Query: 457 PKGGWENDETVEEAAVREAIEEAGVRGQLMGFLGDYHFKSKTQQDEFTPDGLCRAAMYAL 516
           PKGGWENDETV EAA REA+EEAGVRG LM FLG+Y FKSK+ QDEF+P+GLC+AAMYAL
Sbjct: 61  PKGGWENDETVREAAAREAVEEAGVRGILMDFLGNYEFKSKSHQDEFSPEGLCKAAMYAL 120

Query: 517 FVNEELESWPEQDTRNRSWVTIPEAIENCRHAWMRDALVNGFNKWHAENM 567
           +V EEL +WPE +TR R W+TI EA+E+CRH WM+DALV GF KWH E M
Sbjct: 121 YVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDALVEGFCKWHKEKM 170

[Close]

BLAST of CmaCh05G004690 vs. ExPASy Swiss-Prot
Match: Q69K07 (RNA pseudouridine synthase 4, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0103500 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.0e-41
Identity = 112/330 (33.94%), Postives = 173/330 (52.42%), Query Frame = 0


Query: 53  LSLPPF-------PGYPLPRKNQIGFSGESTHVTAITWVKHYFDEIHDSVIQSHFRKGLV 112
           L LPPF           + R    G  GE    TAI WV+    ++  S++Q  FR   V
Sbjct: 53  LQLPPFAPLDAAAAARAISRGGGEGGDGEQ-GATAIKWVRRCCPDLPTSLVQKLFRLRKV 112

Query: 113 Q--VQCPQSGGLDGEGNLKPMRKIRSNEIMETGARVHIPVSVAEMRV---SRRFDTIPSG 172
           +  V   +    D       +R++ + + +  G  + +PV++ E  V   +++FD     
Sbjct: 113 KKNVVTAEISSADASAEQHRLRRVSAKDQLMPGDILFLPVNLKESSVAEKTKKFD----- 172

Query: 173 TLHPNADEIKYLQRLVKYKASIEFNLHSPLCCLLQFMHLPDSAILVLNKPPRLPVKGNLP 232
               N +EI +L+ L  YK                     D AI+V+NKPP +PV+G + 
Sbjct: 173 ----NRNEINFLRGLEIYK---------------------DEAIIVVNKPPGMPVQGGVG 232

Query: 233 VHNSMDALAAAALSYDYDDGPKLVHRLDRESSGIILMGRTKESVAHLQWLFSNIRNAKSS 292
           + NS+D L A+    +  + P+LVHRLDR+ SGI+++GR + S + L  +F      K++
Sbjct: 233 IKNSIDVL-ASMFEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIF----REKTA 292

Query: 293 CKAWDEACNATYQKYWALVIGCPREREGLISAPLSKVLLDDGKTERVVLANKTSFEASQE 352
               D   +   +KY ALVIG PR  +GL+SAPL+K+LL DGK+ER+ +   ++  + Q+
Sbjct: 293 DALADGTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTIRASSNAASVQD 346

Query: 353 AITEYRVLGPTINGCSWIELCPRTSRKHQR 371
           A+TEYRV+     G +W+EL PRT RKHQR
Sbjct: 353 ALTEYRVIESCPQGYTWLELFPRTGRKHQR 346

[Close]

BLAST of CmaCh05G004690 vs. ExPASy Swiss-Prot
Match: Q9LT72 (RNA pseudouridine synthase 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g19440 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.1e-40
Identity = 100/299 (33.44%), Postives = 164/299 (54.85%), Query Frame = 0


Query: 72  SGESTHVTAITWVKHYFDEIHDSVIQSHFRKGLVQVQCPQSGGLDG-EGNLKPMRKIRSN 131
           S +++  TA+ W+     ++  +++Q  FR  L QV+   S  +DG E     ++++ + 
Sbjct: 84  STDNSKTTALRWILRCRPDLPRTLVQKLFR--LRQVRREMSMSVDGDELQRSQLKRVAAK 143

Query: 132 EIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVKYKASIEFNLHSPL 191
           E +  G R+++P+SV     + +       +   + +E K++  LV YK           
Sbjct: 144 ESLNVGDRIYLPLSVD--NDTPQTPPAKKESFQCSDEERKFVCSLVLYK----------- 203

Query: 192 CCLLQFMHLPDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDRE 251
                     D AI+VLNKP  L V+G   +  S+D LAA+ L +D  + P+LVHRLDR+
Sbjct: 204 ----------DPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRD 263

Query: 252 SSGIILMGRTKESVAHLQWLFSNIRNAKSSCKAWDEACNATYQKYWALVIGCPREREGLI 311
            SG++++ RT+ +   L  +F   +   +S     +   +  +KY ALVIGCP  + G I
Sbjct: 264 CSGLLVLARTQTAATVLHSIFRE-KTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQI 323

Query: 312 SAPLSKVLLDDGKTERVVLANKTSFEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 370
           SAPL KV++DDGK+ER+ + +     ++Q AITEYRV+  + +G +W+EL P T RKHQ
Sbjct: 324 SAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQ 356

[Close]

BLAST of CmaCh05G004690 vs. TAIR 10
Match: AT1G78910.1 (Pseudouridine synthase family protein )

HSP 1 Score: 457.6 bits (1176), Expect = 1.5e-128
Identity = 227/367 (61.85%), Postives = 285/367 (77.66%), Query Frame = 0


Query: 8   HLLLAARYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPGYPLPRKN 67
           +L +  R YSR++PPP +    VIRV+NNVA LG PK+G  PRQL+SLPPFPG+PLP KN
Sbjct: 12  YLTVLIRRYSRVAPPPSS----VIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKN 71

Query: 68  --QIGFSGES-THVTAITWVKHYFDEIHDSVIQSHFRKGLVQVQC--PQSGGLDGEGNLK 127
               G  G+S  HVTAI+WVK+YF+EI+D  IQ+HF KGLVQ++    +    + E    
Sbjct: 72  AGADGDDGDSGGHVTAISWVKYYFEEIYDKAIQTHFTKGLVQMEFRGRRDASREKEDGAI 131

Query: 128 PMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVKYKASI 187
           PMRKI+ NE+M+ G ++ +PVS+AEMR+S+R+DTIPSGTL+PNADEI YLQRLV++K   
Sbjct: 132 PMRKIKHNEVMQIGDKIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQRLVRFK--- 191

Query: 188 EFNLHSPLCCLLQFMHLPDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPK 247
                             DSAI+VLNKPP+LPVKGN+P+HNSMDALAAAALS+  D+GP+
Sbjct: 192 ------------------DSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGNDEGPR 251

Query: 248 LVHRLDRESSGIILMGRTKESVAHLQWLFSNIRNAKSSCKAWDEACNATYQKYWALVIGC 307
           LVHRLDRE+SG+++MGRTKES+ +L  +FS+ +   SSCKAW++AC A YQ+YWALVIG 
Sbjct: 252 LVHRLDRETSGLLVMGRTKESIDYLHSVFSDYKGRNSSCKAWNKACEAMYQQYWALVIGS 311

Query: 308 PREREGLISAPLSKVLLDDGKTERVVLANKTSFEASQEAITEYRVLGPTINGCSWIELCP 367
           P+E+EGLISAPLSKVLLDDGKT+RVVLA  + FEASQ+AITEY+VLGP INGCSW+EL P
Sbjct: 312 PKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKINGCSWVELRP 353

Query: 368 RTSRKHQ 370
            TSRKHQ
Sbjct: 372 ITSRKHQ 353

[Close]

BLAST of CmaCh05G004690 vs. TAIR 10
Match: AT3G12600.1 (nudix hydrolase homolog 16 )

HSP 1 Score: 267.7 bits (683), Expect = 2.1e-71
Identity = 121/170 (71.18%), Postives = 140/170 (82.35%), Query Frame = 0


Query: 397 MSDLVARTGRHQQRYDAGCRLVAGCIPFRYRSSDGSSDEVSDKVVEVLMIDTPSGPGLLF 456
           M DLVARTGR QQRY+ G RLVAGCIPFRY +SD   +  S KV++VLMI + SGPGLLF
Sbjct: 1   MCDLVARTGRLQQRYEDGSRLVAGCIPFRYVNSDKDGNSESGKVIQVLMISSSSGPGLLF 60

Query: 457 PKGGWENDETVEEAAVREAIEEAGVRGQLMGFLGDYHFKSKTQQDEFTPDGLCRAAMYAL 516
           PKGGWENDETV EAA REA+EEAGVRG LM FLG+Y FKSK+ QDEF+P+GLC+AAMYAL
Sbjct: 61  PKGGWENDETVREAAAREAVEEAGVRGILMDFLGNYEFKSKSHQDEFSPEGLCKAAMYAL 120

Query: 517 FVNEELESWPEQDTRNRSWVTIPEAIENCRHAWMRDALVNGFNKWHAENM 567
           +V EEL +WPE +TR R W+TI EA+E+CRH WM+DALV GF KWH E M
Sbjct: 121 YVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDALVEGFCKWHKEKM 170

[Close]

BLAST of CmaCh05G004690 vs. TAIR 10
Match: AT3G12600.2 (nudix hydrolase homolog 16 )

HSP 1 Score: 250.4 bits (638), Expect = 3.5e-66
Identity = 111/159 (69.81%), Postives = 131/159 (82.39%), Query Frame = 0


Query: 408 QQRYDAGCRLVAGCIPFRYRSSDGSSDEVSDKVVEVLMIDTPSGPGLLFPKGGWENDETV 467
           +QRY+ G RLVAGCIPFRY +SD   +  S KV++VLMI + SGPGLLFPKGGWENDETV
Sbjct: 3   EQRYEDGSRLVAGCIPFRYVNSDKDGNSESGKVIQVLMISSSSGPGLLFPKGGWENDETV 62

Query: 468 EEAAVREAIEEAGVRGQLMGFLGDYHFKSKTQQDEFTPDGLCRAAMYALFVNEELESWPE 527
            EAA REA+EEAGVRG LM FLG+Y FKSK+ QDEF+P+GLC+AAMYAL+V EEL +WPE
Sbjct: 63  REAAAREAVEEAGVRGILMDFLGNYEFKSKSHQDEFSPEGLCKAAMYALYVKEELATWPE 122

Query: 528 QDTRNRSWVTIPEAIENCRHAWMRDALVNGFNKWHAENM 567
            +TR R W+TI EA+E+CRH WM+DALV GF KWH E M
Sbjct: 123 HETRTRKWLTIEEAVESCRHPWMKDALVEGFCKWHKEKM 161

[Close]

BLAST of CmaCh05G004690 vs. TAIR 10
Match: AT3G19440.1 (Pseudouridine synthase family protein )

HSP 1 Score: 169.5 bits (428), Expect = 7.9e-42
Identity = 100/299 (33.44%), Postives = 164/299 (54.85%), Query Frame = 0


Query: 72  SGESTHVTAITWVKHYFDEIHDSVIQSHFRKGLVQVQCPQSGGLDG-EGNLKPMRKIRSN 131
           S +++  TA+ W+     ++  +++Q  FR  L QV+   S  +DG E     ++++ + 
Sbjct: 84  STDNSKTTALRWILRCRPDLPRTLVQKLFR--LRQVRREMSMSVDGDELQRSQLKRVAAK 143

Query: 132 EIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVKYKASIEFNLHSPL 191
           E +  G R+++P+SV     + +       +   + +E K++  LV YK           
Sbjct: 144 ESLNVGDRIYLPLSVD--NDTPQTPPAKKESFQCSDEERKFVCSLVLYK----------- 203

Query: 192 CCLLQFMHLPDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDRE 251
                     D AI+VLNKP  L V+G   +  S+D LAA+ L +D  + P+LVHRLDR+
Sbjct: 204 ----------DPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRD 263

Query: 252 SSGIILMGRTKESVAHLQWLFSNIRNAKSSCKAWDEACNATYQKYWALVIGCPREREGLI 311
            SG++++ RT+ +   L  +F   +   +S     +   +  +KY ALVIGCP  + G I
Sbjct: 264 CSGLLVLARTQTAATVLHSIFRE-KTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQI 323

Query: 312 SAPLSKVLLDDGKTERVVLANKTSFEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 370
           SAPL KV++DDGK+ER+ + +     ++Q AITEYRV+  + +G +W+EL P T RKHQ
Sbjct: 324 SAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQ 356

[Close]

BLAST of CmaCh05G004690 vs. TAIR 10
Match: AT1G12880.1 (nudix hydrolase homolog 12 )

HSP 1 Score: 163.7 bits (413), Expect = 4.4e-40
Identity = 84/162 (51.85%), Postives = 109/162 (67.28%), Query Frame = 0


Query: 397 MSDLVARTGRHQQRYDAGCRLVAGCIPFRYRSSDGSSDEVSDKVV---EVLMIDTPSGPG 456
           MS L +RTGR +QRYD   RLV+GCIP+R   +D + ++     V   EVLM+ +P+   
Sbjct: 1   MSVLSSRTGRDRQRYDNNFRLVSGCIPYRLMKADETEEDSGVDFVNKLEVLMVSSPNRHD 60

Query: 457 LLFPKGGWENDETVEEAAVREAIEEAGVRGQLMGF-LGDYHFKSKTQQDEFTPDGLCRAA 516
           L+FPKGGWE+DETV EAA REAIEEAGV+G L    LG + F+SK+   E    G C+  
Sbjct: 61  LVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKGY 120

Query: 517 MYALFVNEELESWPEQDTRNRSWVTIPEAIENCRHAWMRDAL 555
           M+AL V EELE WPE+  R R W+T+ EA+E CR+ WM+ AL
Sbjct: 121 MFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRAL 162

The following BLAST results are available for this feature:

BLAST of CmaCh05G004690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XET6	2.1e-127	61.85	RNA pseudouridine synthase 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q0J4D4	7.8e-111	54.64	RNA pseudouridine synthase 3, mitochondrial OS=Oryza sativa subsp. japonica OX=3...	[more]
Q9LHK1	3.0e-70	71.18	Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NUDT16 PE=2...	[more]
Q69K07	1.0e-41	33.94	RNA pseudouridine synthase 4, mitochondrial OS=Oryza sativa subsp. japonica OX=3...	[more]
Q9LT72	1.1e-40	33.44	RNA pseudouridine synthase 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=A...	[more]

BLAST of CmaCh05G004690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78910.1	1.5e-128	61.85	Pseudouridine synthase family protein	[more]
AT3G12600.1	2.1e-71	71.18	nudix hydrolase homolog 16	[more]
AT3G12600.2	3.5e-66	69.81	nudix hydrolase homolog 16	[more]
AT3G19440.1	7.9e-42	33.44	Pseudouridine synthase family protein	[more]
AT1G12880.1	4.4e-40	51.85	nudix hydrolase homolog 12	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 197..379 e-value: 3.4E-31 score: 110.5
None	No IPR available	GENE3D	3.90.79.10	Nucleoside Triphosphate Pyrophosphohydrolase	coord: 401..557 e-value: 4.9E-29 score: 102.9
None	No IPR available	PANTHER	PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	coord: 6..182 coord: 194..369
None	No IPR available	PANTHER	PTHR21600:SF53	RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL	coord: 6..182 coord: 194..369
None	No IPR available	CDD	cd04666	Nudix_Hydrolase_9	coord: 417..551 e-value: 3.93801E-39 score: 137.362
IPR000086	NUDIX hydrolase domain	PFAM	PF00293	NUDIX	coord: 443..551 e-value: 1.8E-12 score: 47.4
IPR000086	NUDIX hydrolase domain	PROSITE	PS51462	NUDIX	coord: 414..558 score: 12.986443
IPR006145	Pseudouridine synthase, RsuA/RluA-like	PFAM	PF00849	PseudoU_synth_2	coord: 204..369 e-value: 2.4E-17 score: 63.5
IPR006145	Pseudouridine synthase, RsuA/RluA-like	CDD	cd02869	PseudoU_synth_RluA_like	coord: 204..378 e-value: 1.8489E-29 score: 112.816
IPR020084	NUDIX hydrolase, conserved site	PROSITE	PS00893	NUDIX_BOX	coord: 459..480
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 200..369
IPR015797	NUDIX hydrolase-like domain superfamily	SUPERFAMILY	55811	Nudix	coord: 407..561

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G004690.1	CmaCh05G004690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000455	enzyme-directed rRNA pseudouridine synthesis
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding