CmaCh05G004670 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G004670
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-type domain-containing protein
Location	Cma_Chr05: 2157692 .. 2158228 (+)
RNA-Seq Expression	CmaCh05G004670
Synteny	CmaCh05G004670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCGCCGATCCCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTTAGCATCCTCGTCTTTATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCGGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA

mRNA sequence

ATGTCCTCCGCCGATCCCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTTAGCATCCTCGTCTTTATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCGGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA

Coding sequence (CDS)

ATGTCCTCCGCCGATCCCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTTAGCATCCTCGTCTTTATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCGGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA

Protein sequence

MSSADPPSSSSSSSSSSAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR

Homology

[Close]

BLAST of CmaCh05G004670 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 7.0e-50
Identity = 103/159 (64.78%), Postives = 120/159 (75.47%), Query Frame = 0


Query: 21  SPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST-RPRPRPRPSAPLPPPAADNV 80
           SP  +GVGLGYGIAIAVSILV IS IML SY CIR+KST R          LP PAA+  
Sbjct: 5   SPPASGVGLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAE-- 64

Query: 81  VVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSA 140
             + +GLD  +IESYP++VLG+SRRLP PN+GPCSICL DY+  + VRCIP+C HCFH+ 
Sbjct: 65  --VKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTD 124

Query: 141 CVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 179
           CVDEWLR SATCPLCRNSPAP+ +ATPLS+  PLA   R
Sbjct: 125 CVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

[Close]

BLAST of CmaCh05G004670 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.9e-27
Identity = 68/169 (40.24%), Postives = 96/169 (56.80%), Query Frame = 0


Query: 28  GLGYGIAIAVSILVFISTIMLVSYACIR-----AKSTRPRPRPR---PSAPLPP------ 87
           GL YGI +++ IL+ I+TI L SY C R     + +T PR R R    +  LPP      
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFD 81

Query: 88  ---PAADNVVVLMVGLDGSIIESYPKLVLGESR-----RLPAPNHGPCSICLSDYQPYDS 147
                +D VVV ++GL   +I+ +PKL   E+R     +  +     CSICL+DY+  D 
Sbjct: 82  FEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDM 141

Query: 148 VRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLA 175
           +R +PDC H FH  CVD WLR+  TCP+CR SP P+P  TP+++  P +
Sbjct: 142 IRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of CmaCh05G004670 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.4e-26
Identity = 63/155 (40.65%), Postives = 94/155 (60.65%), Query Frame = 0


Query: 28  GLGYGIAIAVSILVFISTIMLVSYACIRAK-STRPRPRPRPSAPLPPPAADNVVVLMVGL 87
           G  YGI +++ +L+ I+TI L SY C R + S+ P    + S  +       ++ ++ GL
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIIDVVPGL 122

Query: 88  DGSIIESYPKLVLGESRRLPAPNHGP-----CSICLSDYQPYDSVRCIPDCRHCFHSACV 147
           D   I+SYPK++  E++       GP     C+ICL DY+    +R +PDC H FH  C+
Sbjct: 123 DEDTIQSYPKILYSEAK-------GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCI 182

Query: 148 DEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASN 177
           D WLR++ TCP+CR SP PTP++TPL+E  PLAS+
Sbjct: 183 DTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASS 210

[Close]

BLAST of CmaCh05G004670 vs. ExPASy Swiss-Prot
Match: P0CH01 (Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-24
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 78  NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHG-PCSICLSDYQPYDSVRCIPDCRHCF 137
           N V++  GLD SIIESY K  LGESRRLP  N    C ICLS+Y   ++VRCIP+C HCF
Sbjct: 284 NEVIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCF 343

Query: 138 HSACVDEWLRMSATCPLCRNSPAP 161
           HS C+D WL++  +CPLCRNSP+P
Sbjct: 344 HSECIDVWLKIHGSCPLCRNSPSP 367

[Close]

BLAST of CmaCh05G004670 vs. ExPASy Swiss-Prot
Match: Q9C7E9 (RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 7.3e-23
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 52  ACIRAKSTRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHG 111
           A I A++T  +PR               VV+  GLD S IESY K+ LGESRRLP  N  
Sbjct: 206 AAITARNTTQQPRG--------------VVVTTGLDQSTIESYKKVELGESRRLPGTNGI 265

Query: 112 PCSICLSDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNS 158
            C ICLS+Y   ++VRC+P+C HCFH  C+DEWL++ ++CP+CRNS
Sbjct: 266 ICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCRNS 297

[Close]

BLAST of CmaCh05G004670 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 198.4 bits (503), Expect = 5.0e-51
Identity = 103/159 (64.78%), Postives = 120/159 (75.47%), Query Frame = 0


Query: 21  SPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST-RPRPRPRPSAPLPPPAADNV 80
           SP  +GVGLGYGIAIAVSILV IS IML SY CIR+KST R          LP PAA+  
Sbjct: 5   SPPASGVGLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAE-- 64

Query: 81  VVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSA 140
             + +GLD  +IESYP++VLG+SRRLP PN+GPCSICL DY+  + VRCIP+C HCFH+ 
Sbjct: 65  --VKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTD 124

Query: 141 CVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 179
           CVDEWLR SATCPLCRNSPAP+ +ATPLS+  PLA   R
Sbjct: 125 CVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

[Close]

BLAST of CmaCh05G004670 vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 122.5 bits (306), Expect = 3.5e-28
Identity = 68/169 (40.24%), Postives = 96/169 (56.80%), Query Frame = 0


Query: 28  GLGYGIAIAVSILVFISTIMLVSYACIR-----AKSTRPRPRPR---PSAPLPP------ 87
           GL YGI +++ IL+ I+TI L SY C R     + +T PR R R    +  LPP      
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFD 81

Query: 88  ---PAADNVVVLMVGLDGSIIESYPKLVLGESR-----RLPAPNHGPCSICLSDYQPYDS 147
                +D VVV ++GL   +I+ +PKL   E+R     +  +     CSICL+DY+  D 
Sbjct: 82  FEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDM 141

Query: 148 VRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLA 175
           +R +PDC H FH  CVD WLR+  TCP+CR SP P+P  TP+++  P +
Sbjct: 142 IRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of CmaCh05G004670 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 3.8e-27
Identity = 63/155 (40.65%), Postives = 94/155 (60.65%), Query Frame = 0


Query: 28  GLGYGIAIAVSILVFISTIMLVSYACIRAK-STRPRPRPRPSAPLPPPAADNVVVLMVGL 87
           G  YGI +++ +L+ I+TI L SY C R + S+ P    + S  +       ++ ++ GL
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIIDVVPGL 122

Query: 88  DGSIIESYPKLVLGESRRLPAPNHGP-----CSICLSDYQPYDSVRCIPDCRHCFHSACV 147
           D   I+SYPK++  E++       GP     C+ICL DY+    +R +PDC H FH  C+
Sbjct: 123 DEDTIQSYPKILYSEAK-------GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCI 182

Query: 148 DEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASN 177
           D WLR++ TCP+CR SP PTP++TPL+E  PLAS+
Sbjct: 183 DTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASS 210

[Close]

BLAST of CmaCh05G004670 vs. TAIR 10
Match: AT5G53110.1 (RING/U-box superfamily protein )

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-26
Identity = 60/139 (43.17%), Postives = 87/139 (62.59%), Query Frame = 0


Query: 20  ASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPSAPLPPPAADNV 79
           A P  A   +  G  I  +++VF   +    Y+ I +   R R  P P          + 
Sbjct: 239 AIPRRARYAIAVGAGIPGALIVF--GLFCFVYSKISSCIKRRRLVPTPEINNAQAHYLHS 298

Query: 80  VVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSA 139
            V+++GLDG  IESYPK+VLGES+RLP  +   C+ICLS+Y+P +++R IP C+HCFH+ 
Sbjct: 299 SVIVMGLDGPTIESYPKIVLGESKRLPKVDDATCAICLSEYEPKETLRTIPQCQHCFHAD 358

Query: 140 CVDEWLRMSATCPLCRNSP 159
           C+DEWL+++ TCP+CRNSP
Sbjct: 359 CIDEWLKLNGTCPVCRNSP 375

[Close]

BLAST of CmaCh05G004670 vs. TAIR 10
Match: AT2G46495.1 (RING/U-box superfamily protein )

HSP 1 Score: 114.8 bits (286), Expect = 7.3e-26
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 78  NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHG-PCSICLSDYQPYDSVRCIPDCRHCF 137
           N V++  GLD SIIESY K  LGESRRLP  N    C ICLS+Y   ++VRCIP+C HCF
Sbjct: 284 NEVIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCF 343

Query: 138 HSACVDEWLRMSATCPLCRNSPAP 161
           HS C+D WL++  +CPLCRNSP+P
Sbjct: 344 HSECIDVWLKIHGSCPLCRNSPSP 367

The following BLAST results are available for this feature:

BLAST of CmaCh05G004670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FL42	7.0e-50	64.78	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
Q9FG21	4.9e-27	40.24	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]
Q8RX29	5.4e-26	40.65	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
P0CH01	1.0e-24	60.71	Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A...	[more]
Q9C7E9	7.3e-23	49.06	RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2	[more]

BLAST of CmaCh05G004670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07040.1	5.0e-51	64.78	RING/U-box superfamily protein	[more]
AT5G06490.1	3.5e-28	40.24	RING/U-box superfamily protein	[more]
AT2G35910.1	3.8e-27	40.65	RING/U-box superfamily protein	[more]
AT5G53110.1	1.1e-26	43.17	RING/U-box superfamily protein	[more]
AT2G46495.1	7.3e-26	60.71	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 113..154 e-value: 3.9E-5 score: 33.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 113..155 e-value: 4.0E-12 score: 46.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 113..155 score: 12.267982
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 80..160 e-value: 5.9E-19 score: 69.5
None	No IPR available	PANTHER	PTHR46279:SF8	RING-H2 FINGER PROTEIN ATL69-RELATED	coord: 17..161
None	No IPR available	PANTHER	PTHR46279	RING/U-BOX SUPERFAMILY PROTEIN	coord: 17..161
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 112..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G004670.1	CmaCh05G004670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane