CmaCh05G004380 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G004380
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	clp protease adapter protein ClpF, chloroplastic
Location	Cma_Chr05: 1998664 .. 2010180 (+)
RNA-Seq Expression	CmaCh05G004380
Synteny	CmaCh05G004380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCTGAAACTCAATTTTCATCATTTGTGGTTGCAGAAAGATTGCTCCTCGTCGCTTCTCCGGCAGCTCTCAGGTGTGTTTTCCGGCCTTCTTTCTAACCCTAGCTTTAGATTCTCCTTTTTCTTTCTTCGCTATCGTATAAAATCACAGTGAATGGAATTAATCTGCGGTATTTAGTATATCTCTGTTTGGTTGCGGAGTAATTGTAAAATGCAGTATAGAAATTCAAGAAATTCTTCAGCATTTGAGCTTGGATTTTCCGTTGTTTTTGGATTTTATCAAATAATTTTTTCTTTGACTCGAGGTTAGATCGTTTGTATTTCTCAGCTCCGCTGCGTCTCGTGGATTAAATCGTATATGAACTTTGTTGCTTTTATCTTCCCTCTGTCGTTAACCAAATTAGGGAGTTCCGGTTCTTTCTGTTCGATACGATGCCGATTAATTTTTTGCGATTTCCAGTGAATTTATGATAAATGTGTAGTTCTCGGTTTGTGACTGAGCCGATTTCTCCAAGTAATAGCGGCAAGTATAGCATTGAGAAAGAAAGAAATTCTTATTGAAGTTTTCGCTTAATGTTTTTTATGCAATGTAAAGTTTCTCAGTAAAGCTTCTAAGTTTGATTATTAGCTTAAGTCAGTTGAATGATTTTCCTTTGAATAACTAGTTTTCTTGTTCATAATCATTCTTTGCTTATGCGTGTCTTTTGGCATTAAATGATTTCCAATCTGTTTTCCTTGTGAGTGTTTCATTTTCTCATTGGTCCTCTAGTAATAATCAGCCTCTGAGCTGAAGCTGATCCTACTTTGCAGATGTGAAGATCTTTTATTGAGAGGTAGAGGAAGAAGGGTACAATTTTCTTCTTCAATCAAGGGAAGACTATCTACCTGTTTTAGCAGAAATGGTGCAGGATTTGTCAATACACTCTCTGACATCCTTGGGAGATCCAAAGGTTTATGGATCACCTCTTTCATGGAGGGAGAATTTCAAGCAGACAAGTCCAACCCATTTAACTTCCAGGCAATTCTTTTGGCATCAACGCATGCGAAGCTTTTCCTTAGCTAGCCAACCCTGTAGATCGAAACGAGGAAATTTTAAGGTTAAAGCTGGATGGTTGTTCAGAGGGGGTGGACAAGGATTGGATGCTCGTATAGAGCGCAGTGAGAACGCTAACAATGATATTTTAATCTTCTTTTTCCAGTTGGACCTGGCAACACGAGTACAGGTATAGCAGGCTGTTGTTTTGTTATTGATTTGCTTGTATAAGTGACATAATAGCTATCTCACGAACAAGATTTTCCTGGTATGGATTGTTGTGTTGCAGTATGCATTGAACATTGAACAGTATGAAATTGCACAAGAATTGAGAACAAAGCTAACCGAGGTATTCTTGATTCGAAATAAAACGACTTATTCATAACTCATAGGGGCATATATTTTGAATTGTCTGTTTTACTTGCTAAAGGTCGAAGCAGAAGTCATCAAGCAGCAAGAATCTAAAAGGGGGTTGACTTCAAAGAGCGAAGTTCAAGACAAAGGTTTACATATCATTCGTTTACGGTAAACTCTCCCTTATATTATACCCATATTCGTATTTAGGTTATATCAATCAAATTGTATCTTTTGATCTTATAGTACTTTGGAATATTTAAACTTCTTGATCTCAGGTATTTATTGCCTTTTTCTATCTCTTTATACAGTGCAGATTTGCAGAAGGCTATTGAAAGTGAAAATTATACTTTTGCTGCACAGCTGCGGGATCAAATTTCCAAACTGGAAACTGAGTCCCTAGCTGCATCTGCAAAAGTTCTGGCTTACGAAAGTGCTGAATATAATTTTAGATTGGGACAGAAAACGAAGCACAAGATTTTTGGTATTATAGTTGCATGCTTTTCACACCAGTGTTTCAGCTTAATTTAATTGCTTTGAGGAAAAATATGCCAAGTTGAATATTATTGATACCCACTTTAGCAAAAGGCATGGATTTGGAGCGATCTATCAAATTACAACTTGGAGTTGCGACAATCATGGATTTTTAGATTGAAATGCAGCTTTGCAGAAAAAATGAGTAATGTAGAGAATTAGAACAAGTAAGAACATTCTTGGTATCTTGTAGGATTTTCCTGTTGGCGTATGAAATCAAATGAAGGTGAAACAAACTTGTAAAGAAATGGATGAGAGGGTTTATTGCTGTATAGTAATATTCAAAAAGATCATTCTCCTGGATCTTCCGATATGCCACACTGTTCAGCTATAGTTTTTATACAGTTTGTTCGTGTCTCTTTCTCGCACTAAAAACATTTTTCGTATCAGGATACCGAGGTGTGATTTGTGGAATGGATCCTGTGTGTTGTGAAACAAGTTCCTGGATGGAGATAGCACAAGTTGAAAAATTATCTCGAGGTTCGAATCAGCCGTTCTATCAGGTCAGGTTTTATCGACCTTGCTATGCATCTTTCTCTTCTTCTTCTTTGATTTTTATTTCATGTTGTTGGTATAAGAAGCAAGATCAAATGAAAAAAATAAATTGATTAAAAGTGGATAAGTAATCCTTCAAAAGAAACTAAAAAGAGTCATAATGTAACAGCCCAAGTCCACCACGGGTAAATATTGTCTTCGTTGGTCTTTCTCTTTCTGACTTCTCCTTAAGGTTTTAAAATGCGTCTACTAGGGAGAGGTTTCCACACCCTTATAAGGAATGCTTCGTTTCCCTCTCCAACCAATGTGAGACCTCACAATCCACCCCCTTGGGGGCGCAGCGTCCTCGTTGGCACTTTGTCCGGTGTCTGGCTCTGATACTCTTTGTAACAGCCCAAGTCCACTGCTAGCAAATATTGTCCTCTTTGGACTTTTCCTTTCGGGCTTCTCCTCAAGGTTTTAAAACATGTCTACTTGGGAGAAGTTTCTACACCCTAACAAGGAATGAGACCTCACACCTAATTAATTTCATTGGTGTTAAAAGATGTGAAATGACAATATTTACAAATGAAACCCATAAAAATGTCAACAGGGCCTGATTGTCTCTCTTCCATCTCCAATAATTCATTTTCAGGTTTTAGTCGATGTTCGTACAAACCCGGATTTGCTGGTTGCATATGGTAAAATTTCTACGAATCTTGATGGTTATAGATACAGAATTACTTAGATTTTGAATGTAGTTTGATTCTCCTGCATGGCTTAATCTCTTTACAATGTGCGTGGTGATATGTCTAAAGACCATTGATGTGGATTGTTCTTCTATATTCTATGATGCAGTTGCTGAGGAAAATCTTCTTGTTCCTGAAGAACCAGATACGGTGGCTGTCCGCTTCCTTCAATTCTATCATCACTGTTATTAGTTAGAACTTTGCTAGGGTTTATGAGCTGACTGTGATGATGATGATGTGCAGGAGAGGTTTGATCATCCATATAATTCCTTCTTATTCTATGGAGTGGATACAGCTGGGGATTTCATTCCTGTAAGGCAACTGCGGGAGAAGTACAATCGACCTCGACACGAAGTTCCTTATGATTCTCAAGACGACGACGAGCAACGAGGTGATGATTGAGCAGTGCACATTTTTTGAAATCCATCATTCAACACCTTCAAAAAAATGGTTTGTTCATCTCATTTCTTATGAGTTCTTTAATTCTCTCCTTGTGTGGTAAGCTTTCCATATTCGTTGATTTTCTGGAGATTTGATGAAACTTGATAGCTGAAAATTCTGAATCAGTATTATACATGTCATATATATATACACACACACACAGCATCGCGTCATTTTCTTCCCTTTTCCTTGATACTTATTTTCAAGTGTTATACTTGACAACGAGATCGATCAAGTTCTTCGTTTGATAGCCATTTAGTTTTGATTTTTAAATTTTAAAAATTAAGCTTATAAAACTAATTTCATCTATGGATTTATTTTGCTCAAGAACGTTTTTAAAATTCAAATCATTCATGGAATAATTCGAGAGAGGGAGATATGATGTAGTTTTATATAATGATGTATTTGTTTATAGCGGTCATGCTTGAAGGATATATCTTAATTTTTTTTTTTCAATACTCATGGACTATTTATTAGATCCAGAATTAAAATTTAACACAAAATAAAAAAGTTGAAAGAAATTATTAGAAAATTTTTAAGATTCAAATACTAAATATATTTGATCGGCCTAAGTCAAATTATAAAAATATTCTTTAAACTTTGTCATTTGTTTTAAACGAATATTTTGTTCTTTTAAAGTTGTAATATTTTTCTTGACCTCGTGAATTTATTATTATATTTTATTTTATATAAATTGAAAATTGAAATACTAGTATGATAATATTCAAATTTCAATTTGATTCCAAGCCCCTGTCACTTTATTTTAGGTGCAAAATATTCGTCTAAATCCTAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTCAACAAGAATATTTTAACTTTTATAAACACACACACACATATATATATATATATATATAAATAACAAAATTTATAGATAATTTTTAATTTAGGCAAATTGGACATGAGTCAGAGGTGGGGCCCTTAGCATGTAGTTTAAGAAAATCTTCGACTTTGGAAATGGTCACACTCGTTGTCCATGACAGCGACAAGACAATGCAAAAACCCGGGCCCCACTTTCTGGTCGGTACAAAACATCACCATTTTCAATTATTTTTATAAATTTTTAAAATCCGATTTAATTGTTCATTTTATAAAATAAAAATTTTAGAAATTATTTGTGAAATTCCCACACATTAATACTCCCTCGCTACCTTTATTTTTTAAAAAAATTAATTTAATATAAGTATAATTTCTCATCAAATTTTGTGCTTATAACGGTAATAATACCTTATTCTCTTATTTACATGCGAGGAAGAAACTCGTAGAATGCACGTGGAATGAGCCGTCTCTCGTTCTCGAAGAGTCAGGTCTCGTTCACAAAAGGATATGTGTGTTCATATCCACACAACTCCATAATTAGTTCGTGACATTTCACATTTATGGTCTAGACCACACCCATTAACGAAAGACTTACACTGCTTCATCATGTCACCACATCCAATGGTTTCTAATCAATAGCACGTCAACCTAAATTTTTGTAAAAATTTGGGAAGCAATCAAGTTAGCGTAACTATTCACATTTTTACGGTCTAGATCACACCCACATACAAAATAATGCACTACTTCAAAATGTAACAGCTTTGACCCAAACAATTGCAAGTATTTGAATGAGACAAAGGTGGAAGGCAAAAGATTCCCCTCCATAATCCCATATATCTAATCCAAATATTATTTAAGCAAACTAAAAAAAAAAATTGTATGGGAAGATGTTTGTACTTTATTTAGTTTGAAAAAGAAATTGAGATGAAATTCAGCTAAAATTTAAAGTTCCTCGTAAAGACAAAAAAAAAATATTATTTATTTTTTGTGGAAGATAAGATTGGAGAGCATCAAAGGTGGAGGAAAAGAGAAAGGGTTGAGAGTCACCAATGGAGTTTCACTGCCATGGCTGACATAGAATCAACCAATCCCCACATCAAAAAATGCTTCCCATTTCTGTAATTTTCAATTACCCACAAGGGCATTTCCCTTCCCTTCTTCTCCTTCTTCCTATTCCTCGTTCTTTCCGCAGTACCCTACAACGGACCCACACCAAATTCTGTTTCTCAACCATTTTGATTAAGGGTAGAGATTAGATTAAGATTAAGATTAAGATTAAGATTAAGATTAAGATTAAGATTAGATTAATTTACCTTTAGGGAAGAAAAGGAAGGAAGGAAGGAAGCCCTCATTTCGTTTCTCTTTTGATGATGAGGGAAACCAGTTCAAATCGTGAGACTCTGATGTTGACAAATTTCAGGTCACTTCCTTAGCACTTCGATTTTGTTTGTATTTTATGGAGATTTCTTATCTACAATCTCTCTCTAAAACAGGGCTTTCTATCTTTCATCTCTGAACCTTTACTGTCTCGTTTCCCAGAGAGAGATTGGCCCAGTAGATCGAAATCTCTGCTGTTTTTCTTCAACTCCATGACGATCTAAACCCTCCCTTTTTCATGGCCTTCTTCTTCTTCTGTTTCCTATCGTTCTGGATATGCGTTGCTTTTGTTTTTCACTTCCCTTTGTCTTTGATGGAGGGAGTGCGATGAGATTCTGGGTTTTCGTTGATTGTTCAATCCGAAGCAGATTCTTCAAGGAATGTTCGATTGAGGTAATTTTGTTCTCTTCTTTCACCTGCTGATTTAATCGATGGGTTCTTGTGTTCTGATCGTTTGATTGGTTCTGTTTTGTGGTTTAGCTCTGAAAACTGTTGGGTGCTTGTTGGCTTCATCATGCATTTGCTTTTGCACTGAATTCTTGGATTCTGATTGCTAATATTTGGTTTGCTCCGTTGGATTGACTTTTGTAGACTTCAATATTTGTCTTGTTACTCAGAGTAGACTTGTGAAAACACAAAGCTCATACATCTCTTTACGTTTGCTTCCTCTCCTTCTTTCCCCTGAACTGGTCGAGAGAGATTAATCCGCACCATATATATTTTTTAACCTTCGAACTGAAACCCTCTCAGATGGAATTTCAGAACCTAAACAACTCAGTGGAGCTGAGAGCTCCGCTGTCTTCGGAGGTTCAGGCTTGTGCCGGGGAGTCGAAAGCATCGACCTCCATGAGAGTGGTGGGGACTTCCTGGGAATCTCAGAATTCCTGTTCTTCACCTCCCATTTTCAAATATGCATCCCATCAGATTGGTCTGGTTTTGTCCATTTTCTGCTAAATCGAACGGTCTTTTCTTTTAAACTTCTGATCAGTTCAAGGAGGTGTTCTTTGGAGTTCATCTTCAAGTGTTCATTTGAGTTTCCAGAGCTCACAGGTTATAGTGCTGATATTGTTACTTTCTTTTGAGCCGAGGTTCAAGTGAGTGAATTGTGATGAAATCTTTTCTTGTAAATCACTTTAGAGTGGATCTTTGAACCCAATGATTGTGGATTCGGGTGTGTTTGATGAAGTCTACTCTCCTCAACTGCTTTCTTATTGGGACTAGTTTTCTGTGTGTGAGATCTCACATCGGTTGGAGAGGAGAACGGAGGATTCCTTATAAGTATGTGAAAACCTCTTCCTAATAGACACGTTTTAAAAACCTTGAGGGGAAGCTCAAAAGGAGAATCCCAAAGAGAACGATATCGGCTAGCAGTGGACTTGGGCTAGTGACATGAGCTCCATTGTTTTTGTTTTTGTGCCTATCGACTTTGCATTAGAAAACTATAGACCGGTCTTCGTTCAATGCCTTTGAATTCAATATGTCTATGATTTTCAGGAATGGGGACTAAAGTGCAGTGCAAGAGTTCCTTGCCAGGATTTTACCCAATGAGGGATCTTAACAATGATTCTAACAGTCATAACTGGCACCTATTTTATGGTGAAAGATCCTTCTTAACTGCACAATATCACGAGGTCATCTCGCCAATGGCTTGCGCAAATGGATATAGAGGCGATGATAAAAATGTAGTGAAGCAAAAAATGCTTGAACATGAGGCCGTTTTCAAAAATCAGGTACGTTTCTATTTATATCTGATCTTGCAGTTTGGTTCATGAACTCATCGGGGTCTAGCTCTAACCCGGATATTATGTCTTCTGTCAAACTTCAGGTGTTCGAACTACACCGCCTGTATAGAAAACAAAGAGATTTAATGAATAAAATCAAATCCACAGAACTCGGCAGAAACTGTTTAGCTGTAGATTCATTGCTCTTCTCGAGCCCCTTGACGTCTAAAGTTACTTCGAGACGAAATCTGCCATGTTTTCCTGTTGCGAATTCGTCTAGTACCAGGTTTTCTATTTCAGGCATTGAAGAAGAACATTCTTCTTTGATTTCTGTAAAAGGCAATAGCCAGAGTCCTTGTTTCTTTCCATCACAAAATGGAAGTACAGTGAAGAACTTGCAGGTTCTCGAGTCCAGACCGACAAAGTTTGGAAGAAAACTGTTAGATCTTCAGCTTCCTGCCGAGGAGTACATCGATAGTGAAGATGGGGAACAATTCCATGATGGAAATGTGCCTGACATATTAAGTCACAATCACAACGAGGATCAAAAGATTGATATTGAGAGGGATGTCACCGACTTAAACGAACCCATTCAACTTGTAGAAACCAATGCTTCAACTTATGTTGATCCACTAGGTTCTGCTTCTTGTCATGGGGAGATTCTATGTCCCAATCCATCTTCAGGGCCAAATTCAGGCCTTAAAAATTTGCAGAGGAAAAGTTCATGGCCTGTTTCTTCTCAGCCTATGGAAAGTTTACTCAGTAAAGTTCATGAAGCTCCACCTCTTCATTCAACAGATAAAGGTAGGACAGATCAGTCAAGGGAGGGGCAGGTCTTTGGTTTGCAGTTTACCAAAAGATGCCCTGAGATTAAGGGTGAACCACCGTGTTCCTTCGTCACTTCTCGTGCATCCGCTCCACGTCCAAATGCTCCTGATCTTAGCAAGTCCTGGTCTAACTCCTATTCAACTGCACAAGCTCAGCAATGTCTGCAGAGGAATTTTCATTCCCCGTTTCATGGCGTGGAGAGTTCTGGAGAAAGATGGCTTCTTAGTAGTGGTTCCGAACTCAATAAAGGTTCTGATAGCGAATTATTGTACTATAACAGGGTCTTTCTTGGGTTTTCATCTGAGTACAAGGAAGAAGTAGGCCGCTCCTCTTCTGTCGGTTATAGCTATCGGATGCAGGGTAATGGTAACAATGAAGCTCCCAAAGACTTAAGTCCTTCCATGTCATTGAAACTCCTCAAGGATTCTAATTATATGAACATGAAGGGTCCAAAAGAGAGAGGTTTTAACATGGTGTTTCCAAATAATTCATCTGGTCAAGCAGGACTGGCGGTTGGGGAAAATTGTGCATTGTTACCTTGGCTCAGTGGTACAACTGGTGGAAGCACTGAAACTACTAATAAAAATTCTCATTCATTTCGTAATGACATTTTCAACGAAGAGTTTGAATCGGACAGGTCTGCTAAGAATCGAAAACTACTTATAAGATCAACATCTGAGGAATTGCAGGATCCCAAGAAAGCAATGTGTTCTCTCGCTCGACCCTCGGTCCCATGTGAAACCAAAGAAAGCAGGGAATGTAGAGTTCTTGATATCAACTTGCCTTGTGATCCTTCGGTTGCTGAATCAGAAAATGAGCCCACGGAGAAACTGAATGAAGCAAAAGTTTCCAGTTTTGGACTTATTGATTTAAACTTGAGTATAAGTGAAGATGAAGAATCTTCGAGACCAACGCCAAAATCGACTGTCAGAATGCGGGGAGAGATAGATTTGGAAGCCCCTGTGATTTCCGAGACTGAGGATACTGTTCCTGCTGAAGAAATTATAGAAGCAGAGCATGAGTTAGCTTCGGAACCTCACTGTAAAGCCATAAACCAAGAAGATGTGCTCATAGAGATAGCAGCAGAGGCAATGGTTTCCATTTCCTCAGCTGTTGGTCACATCTACTTGGAGGATGCAACTTGCAGTGCAGCACAAGATTCTCCGCACAATCCCCTTAATTGTTTGGTGGAGATGGCTTTCTTATGTTCAAATGGTTATGAAAGCGAGTCTCAAGCGGTGGAATCTTCTTTAGAAGGGATGGACACCTTTGAGTCCATGACATTGGAACTGATAGAAACCAAGGCAGAAGAATATTTGCCTAAATCGTCCTCGGTTCCGGGACATATAACAATAGAAGAAGACACAGCTAATTTGCTGCAAAACCGTCCTCAAAGAGGCCAGTCTAGAAGAGGCAGGCAACGGAGGGACTTCCAAAGGGACATTCTTCCTGGCCTTGCTTCTCTATCAAGACAAGAAGTTACAGAAGATCTTAATACATTTGGAGGGGTAATGAAAGCAATGGGTCATGTGTGGACTCCAGGGTTGACCAAGAGGAACTCGTTGAGAAACGCTGCCTCTGGCAGGGGAAGGCGGCGATCAGTGATCAGCCCCTCCCCACAGTCAACTGAGAATCTTCCACTGCTGCCTCAGCCTAGTAACTCTGAGATAGGACTAGACAAAAGGAGCCTGACAGGATGGGGGAAGACAACTCGACGGCCCCGCCGACAAAGAGTCCAGGCTGGTAATCTTGCAGCTATTGCTTTAGTTTAGAGATAGTGTTGAGAGTCATCAATTTCTTGAATGGACTGTCAAATTCCCCATTGTACATTTTCAGCTTAAATCCTTGACCTCACATGTTTATCTCTGCTGTTTGACAACTCTATACCATATCATAAGATAAGTGGATAGTTTTGCCAATGTATATCTCTCTCTTAGATTACACTGATGGATTTACTGGTGTTAGAATCTTCCATACCTAGCTGGGTTTCTTTTTTCATTTTTTTAAGAAAATATTAGATATATTGAGATATGCTCGAGTTACTGCAAACTGTAAACGGAAGGTCGATTTACCTTTGCATCATTGATTTGTTCTTTGGGGGAAGATGTTGATGATCTTCAGGAAAGAATACCCTCCACAGATGGTATCAGTAGGGACCTGATAAACTTATCTACCTTGTCGACACGATAGAACGGCTTGGAATAAGCCATTATTCCATTGAATCTCAAGGTTTGTACTCTTTTGAGATTCATTATGCTTGGAAACCCAGGAAAGAATACCCTCCACAGATGGTATCAGTAGGGACCTGATAAACTTATCTACCTTGCCGACACGATAGAACGGCTTGGAATAAGCCATTATTCCATTGAATCTCAAGGTTTGTACTCTTTTGAGATTGATTATGCTCGGAAACCCGGGGAGTCGAGGAATAAGAACAATGAAGGTGTCTAAACTATAGAATAAGATGATGAATAGTTGTATTCTGAATAAGAACTCGTATCATGCAATGAACAATGTGGCTGTACATTATTAACTTCTTCCTGAGAAAATCTCTGAAAGTTATCTATATATCTATGCGTATCCTTTGTTTGAGAGTGAGAGGCATCTCCAGCTCCAAATC

mRNA sequence

TGGCTGAAACTCAATTTTCATCATTTGTGGTTGCAGAAAGATTGCTCCTCGTCGCTTCTCCGGCAGCTCTCAGATGTGAAGATCTTTTATTGAGAGGTAGAGGAAGAAGGGTACAATTTTCTTCTTCAATCAAGGGAAGACTATCTACCTGTTTTAGCAGAAATGGTGCAGGATTTGTCAATACACTCTCTGACATCCTTGGGAGATCCAAAGGTTTATGGATCACCTCTTTCATGGAGGGAGAATTTCAAGCAGACAAGTCCAACCCATTTAACTTCCAGGCAATTCTTTTGGCATCAACGCATGCGAAGCTTTTCCTTAGCTAGCCAACCCTGTAGATCGAAACGAGGAAATTTTAAGGTTAAAGCTGGATGGTTGTTCAGAGGGGGTGGACAAGGATTGGATGCTCGTATAGAGCGCAGTGAGAACGCTAACAATGATATTTTAATCTTCTTTTTCCAGTTGGACCTGGCAACACGAGTACAGTATGCATTGAACATTGAACAGTATGAAATTGCACAAGAATTGAGAACAAAGCTAACCGAGGTCGAAGCAGAAGTCATCAAGCAGCAAGAATCTAAAAGGGGGTTGACTTCAAAGAGCGAAGTTCAAGACAAAGGTTTACATATCATTCGTTTACGTGCAGATTTGCAGAAGGCTATTGAAAGTGAAAATTATACTTTTGCTGCACAGCTGCGGGATCAAATTTCCAAACTGGAAACTGAGTCCCTAGCTGCATCTGCAAAAGTTCTGGCTTACGAAAGTGCTGAATATAATTTTAGATTGGGACAGAAAACGAAGCACAAGATTTTTGGATACCGAGGTGTGATTTGTGGAATGGATCCTGTGTGTTGTGAAACAAGTTCCTGGATGGAGATAGCACAAGTTGAAAAATTATCTCGAGGTTCGAATCAGCCGTTCTATCAGTTTGATTCTCCTGCATGGCTTAATCTCTTTACAATGTGCGTGGTGATATGTCTAAAGACCATTGATGTGGATTGTTCTTCTATATTCTATGATGCAGTTGCTGAGGAAAATCTTCTTGTTCCTGAAGAACCAGATACGGAGAGGTTTGATCATCCATATAATTCCTTCTTATTCTATGGAGTGGATACAGCTGGGGATTTCATTCCTGTAAGGCAACTGCGGGAGAAGTACAATCGACCTCGACACGAAGTTCCTTATGATTCTCAAGACGACGACGAGCAACGAGGAATGGGGACTAAAGTGCAGTGCAAGAGTTCCTTGCCAGGATTTTACCCAATGAGGGATCTTAACAATGATTCTAACAGTCATAACTGGCACCTATTTTATGGTGAAAGATCCTTCTTAACTGCACAATATCACGAGGTCATCTCGCCAATGGCTTGCGCAAATGGATATAGAGGCGATGATAAAAATGTAGTGAAGCAAAAAATGCTTGAACATGAGGCCGTTTTCAAAAATCAGGTGTTCGAACTACACCGCCTGTATAGAAAACAAAGAGATTTAATGAATAAAATCAAATCCACAGAACTCGGCAGAAACTGTTTAGCTGTAGATTCATTGCTCTTCTCGAGCCCCTTGACGTCTAAAGTTACTTCGAGACGAAATCTGCCATGTTTTCCTGTTGCGAATTCGTCTAGTACCAGGTTTTCTATTTCAGGCATTGAAGAAGAACATTCTTCTTTGATTTCTGTAAAAGGCAATAGCCAGAGTCCTTGTTTCTTTCCATCACAAAATGGAAGTACAGTGAAGAACTTGCAGGTTCTCGAGTCCAGACCGACAAAGTTTGGAAGAAAACTGTTAGATCTTCAGCTTCCTGCCGAGGAGTACATCGATAGTGAAGATGGGGAACAATTCCATGATGGAAATGTGCCTGACATATTAAGTCACAATCACAACGAGGATCAAAAGATTGATATTGAGAGGGATGTCACCGACTTAAACGAACCCATTCAACTTGTAGAAACCAATGCTTCAACTTATGTTGATCCACTAGGTTCTGCTTCTTGTCATGGGGAGATTCTATGTCCCAATCCATCTTCAGGGCCAAATTCAGGCCTTAAAAATTTGCAGAGGAAAAGTTCATGGCCTGTTTCTTCTCAGCCTATGGAAAGTTTACTCAGTAAAGTTCATGAAGCTCCACCTCTTCATTCAACAGATAAAGGTAGGACAGATCAGTCAAGGGAGGGGCAGGTCTTTGGTTTGCAGTTTACCAAAAGATGCCCTGAGATTAAGGGTGAACCACCGTGTTCCTTCGTCACTTCTCGTGCATCCGCTCCACGTCCAAATGCTCCTGATCTTAGCAAGTCCTGGTCTAACTCCTATTCAACTGCACAAGCTCAGCAATGTCTGCAGAGGAATTTTCATTCCCCGTTTCATGGCGTGGAGAGTTCTGGAGAAAGATGGCTTCTTAGTAGTGGTTCCGAACTCAATAAAGGTTCTGATAGCGAATTATTGTACTATAACAGGGTCTTTCTTGGGTTTTCATCTGAGTACAAGGAAGAAGTAGGCCGCTCCTCTTCTGTCGGTTATAGCTATCGGATGCAGGGTAATGGTAACAATGAAGCTCCCAAAGACTTAAGTCCTTCCATGTCATTGAAACTCCTCAAGGATTCTAATTATATGAACATGAAGGGTCCAAAAGAGAGAGGTTTTAACATGGTGTTTCCAAATAATTCATCTGGTCAAGCAGGACTGGCGGTTGGGGAAAATTGTGCATTGTTACCTTGGCTCAGTGGTACAACTGGTGGAAGCACTGAAACTACTAATAAAAATTCTCATTCATTTCGTAATGACATTTTCAACGAAGAGTTTGAATCGGACAGGTCTGCTAAGAATCGAAAACTACTTATAAGATCAACATCTGAGGAATTGCAGGATCCCAAGAAAGCAATGTGTTCTCTCGCTCGACCCTCGGTCCCATGTGAAACCAAAGAAAGCAGGGAATGTAGAGTTCTTGATATCAACTTGCCTTGTGATCCTTCGGTTGCTGAATCAGAAAATGAGCCCACGGAGAAACTGAATGAAGCAAAAGTTTCCAGTTTTGGACTTATTGATTTAAACTTGAGTATAAGTGAAGATGAAGAATCTTCGAGACCAACGCCAAAATCGACTGTCAGAATGCGGGGAGAGATAGATTTGGAAGCCCCTGTGATTTCCGAGACTGAGGATACTGTTCCTGCTGAAGAAATTATAGAAGCAGAGCATGAGTTAGCTTCGGAACCTCACTGTAAAGCCATAAACCAAGAAGATGTGCTCATAGAGATAGCAGCAGAGGCAATGGTTTCCATTTCCTCAGCTGTTGGTCACATCTACTTGGAGGATGCAACTTGCAGTGCAGCACAAGATTCTCCGCACAATCCCCTTAATTGTTTGGTGGAGATGGCTTTCTTATGTTCAAATGGTTATGAAAGCGAGTCTCAAGCGGTGGAATCTTCTTTAGAAGGGATGGACACCTTTGAGTCCATGACATTGGAACTGATAGAAACCAAGGCAGAAGAATATTTGCCTAAATCGTCCTCGGTTCCGGGACATATAACAATAGAAGAAGACACAGCTAATTTGCTGCAAAACCGTCCTCAAAGAGGCCAGTCTAGAAGAGGCAGGCAACGGAGGGACTTCCAAAGGGACATTCTTCCTGGCCTTGCTTCTCTATCAAGACAAGAAGTTACAGAAGATCTTAATACATTTGGAGGGGTAATGAAAGCAATGGGTCATGTGTGGACTCCAGGGTTGACCAAGAGGAACTCGTTGAGAAACGCTGCCTCTGGCAGGGGAAGGCGGCGATCAGTGATCAGCCCCTCCCCACAGTCAACTGAGAATCTTCCACTGCTGCCTCAGCCTAGTAACTCTGAGATAGGACTAGACAAAAGGAGCCTGACAGGATGGGGGAAGACAACTCGACGGCCCCGCCGACAAAGAGTCCAGGCTGGTAATCTTGCAGCTATTGCTTTAGTTTAGAGATAGTGTTGAGAGTCATCAATTTCTTGAATGGACTGTCAAATTCCCCATTGTACATTTTCAGCTTAAATCCTTGACCTCACATGTTTATCTCTGCTGTTTGACAACTCTATACCATATCATAAGATAAGTGGATAGTTTTGCCAATGTATATCTCTCTCTTAGATTACACTGATGGATTTACTGGTGTTAGAATCTTCCATACCTAGCTGGGTTTCTTTTTTCATTTTTTTAAGAAAATATTAGATATATTGAGATATGCTCGAGTTACTGCAAACTGTAAACGGAAGGTCGATTTACCTTTGCATCATTGATTTGTTCTTTGGGGGAAGATGTTGATGATCTTCAGGAAAGAATACCCTCCACAGATGGTATCAGTAGGGACCTGATAAACTTATCTACCTTGTCGACACGATAGAACGGCTTGGAATAAGCCATTATTCCATTGAATCTCAAGGTTTGTACTCTTTTGAGATTCATTATGCTTGGAAACCCAGGAAAGAATACCCTCCACAGATGGTATCAGTAGGGACCTGATAAACTTATCTACCTTGCCGACACGATAGAACGGCTTGGAATAAGCCATTATTCCATTGAATCTCAAGGTTTGTACTCTTTTGAGATTGATTATGCTCGGAAACCCGGGGAGTCGAGGAATAAGAACAATGAAGGTGTCTAAACTATAGAATAAGATGATGAATAGTTGTATTCTGAATAAGAACTCGTATCATGCAATGAACAATGTGGCTGTACATTATTAACTTCTTCCTGAGAAAATCTCTGAAAGTTATCTATATATCTATGCGTATCCTTTGTTTGAGAGTGAGAGGCATCTCCAGCTCCAAATC

Coding sequence (CDS)

ATGGTGCAGGATTTGTCAATACACTCTCTGACATCCTTGGGAGATCCAAAGGTTTATGGATCACCTCTTTCATGGAGGGAGAATTTCAAGCAGACAAGTCCAACCCATTTAACTTCCAGGCAATTCTTTTGGCATCAACGCATGCGAAGCTTTTCCTTAGCTAGCCAACCCTGTAGATCGAAACGAGGAAATTTTAAGGTTAAAGCTGGATGGTTGTTCAGAGGGGGTGGACAAGGATTGGATGCTCGTATAGAGCGCAGTGAGAACGCTAACAATGATATTTTAATCTTCTTTTTCCAGTTGGACCTGGCAACACGAGTACAGTATGCATTGAACATTGAACAGTATGAAATTGCACAAGAATTGAGAACAAAGCTAACCGAGGTCGAAGCAGAAGTCATCAAGCAGCAAGAATCTAAAAGGGGGTTGACTTCAAAGAGCGAAGTTCAAGACAAAGGTTTACATATCATTCGTTTACGTGCAGATTTGCAGAAGGCTATTGAAAGTGAAAATTATACTTTTGCTGCACAGCTGCGGGATCAAATTTCCAAACTGGAAACTGAGTCCCTAGCTGCATCTGCAAAAGTTCTGGCTTACGAAAGTGCTGAATATAATTTTAGATTGGGACAGAAAACGAAGCACAAGATTTTTGGATACCGAGGTGTGATTTGTGGAATGGATCCTGTGTGTTGTGAAACAAGTTCCTGGATGGAGATAGCACAAGTTGAAAAATTATCTCGAGGTTCGAATCAGCCGTTCTATCAGTTTGATTCTCCTGCATGGCTTAATCTCTTTACAATGTGCGTGGTGATATGTCTAAAGACCATTGATGTGGATTGTTCTTCTATATTCTATGATGCAGTTGCTGAGGAAAATCTTCTTGTTCCTGAAGAACCAGATACGGAGAGGTTTGATCATCCATATAATTCCTTCTTATTCTATGGAGTGGATACAGCTGGGGATTTCATTCCTGTAAGGCAACTGCGGGAGAAGTACAATCGACCTCGACACGAAGTTCCTTATGATTCTCAAGACGACGACGAGCAACGAGGAATGGGGACTAAAGTGCAGTGCAAGAGTTCCTTGCCAGGATTTTACCCAATGAGGGATCTTAACAATGATTCTAACAGTCATAACTGGCACCTATTTTATGGTGAAAGATCCTTCTTAACTGCACAATATCACGAGGTCATCTCGCCAATGGCTTGCGCAAATGGATATAGAGGCGATGATAAAAATGTAGTGAAGCAAAAAATGCTTGAACATGAGGCCGTTTTCAAAAATCAGGTGTTCGAACTACACCGCCTGTATAGAAAACAAAGAGATTTAATGAATAAAATCAAATCCACAGAACTCGGCAGAAACTGTTTAGCTGTAGATTCATTGCTCTTCTCGAGCCCCTTGACGTCTAAAGTTACTTCGAGACGAAATCTGCCATGTTTTCCTGTTGCGAATTCGTCTAGTACCAGGTTTTCTATTTCAGGCATTGAAGAAGAACATTCTTCTTTGATTTCTGTAAAAGGCAATAGCCAGAGTCCTTGTTTCTTTCCATCACAAAATGGAAGTACAGTGAAGAACTTGCAGGTTCTCGAGTCCAGACCGACAAAGTTTGGAAGAAAACTGTTAGATCTTCAGCTTCCTGCCGAGGAGTACATCGATAGTGAAGATGGGGAACAATTCCATGATGGAAATGTGCCTGACATATTAAGTCACAATCACAACGAGGATCAAAAGATTGATATTGAGAGGGATGTCACCGACTTAAACGAACCCATTCAACTTGTAGAAACCAATGCTTCAACTTATGTTGATCCACTAGGTTCTGCTTCTTGTCATGGGGAGATTCTATGTCCCAATCCATCTTCAGGGCCAAATTCAGGCCTTAAAAATTTGCAGAGGAAAAGTTCATGGCCTGTTTCTTCTCAGCCTATGGAAAGTTTACTCAGTAAAGTTCATGAAGCTCCACCTCTTCATTCAACAGATAAAGGTAGGACAGATCAGTCAAGGGAGGGGCAGGTCTTTGGTTTGCAGTTTACCAAAAGATGCCCTGAGATTAAGGGTGAACCACCGTGTTCCTTCGTCACTTCTCGTGCATCCGCTCCACGTCCAAATGCTCCTGATCTTAGCAAGTCCTGGTCTAACTCCTATTCAACTGCACAAGCTCAGCAATGTCTGCAGAGGAATTTTCATTCCCCGTTTCATGGCGTGGAGAGTTCTGGAGAAAGATGGCTTCTTAGTAGTGGTTCCGAACTCAATAAAGGTTCTGATAGCGAATTATTGTACTATAACAGGGTCTTTCTTGGGTTTTCATCTGAGTACAAGGAAGAAGTAGGCCGCTCCTCTTCTGTCGGTTATAGCTATCGGATGCAGGGTAATGGTAACAATGAAGCTCCCAAAGACTTAAGTCCTTCCATGTCATTGAAACTCCTCAAGGATTCTAATTATATGAACATGAAGGGTCCAAAAGAGAGAGGTTTTAACATGGTGTTTCCAAATAATTCATCTGGTCAAGCAGGACTGGCGGTTGGGGAAAATTGTGCATTGTTACCTTGGCTCAGTGGTACAACTGGTGGAAGCACTGAAACTACTAATAAAAATTCTCATTCATTTCGTAATGACATTTTCAACGAAGAGTTTGAATCGGACAGGTCTGCTAAGAATCGAAAACTACTTATAAGATCAACATCTGAGGAATTGCAGGATCCCAAGAAAGCAATGTGTTCTCTCGCTCGACCCTCGGTCCCATGTGAAACCAAAGAAAGCAGGGAATGTAGAGTTCTTGATATCAACTTGCCTTGTGATCCTTCGGTTGCTGAATCAGAAAATGAGCCCACGGAGAAACTGAATGAAGCAAAAGTTTCCAGTTTTGGACTTATTGATTTAAACTTGAGTATAAGTGAAGATGAAGAATCTTCGAGACCAACGCCAAAATCGACTGTCAGAATGCGGGGAGAGATAGATTTGGAAGCCCCTGTGATTTCCGAGACTGAGGATACTGTTCCTGCTGAAGAAATTATAGAAGCAGAGCATGAGTTAGCTTCGGAACCTCACTGTAAAGCCATAAACCAAGAAGATGTGCTCATAGAGATAGCAGCAGAGGCAATGGTTTCCATTTCCTCAGCTGTTGGTCACATCTACTTGGAGGATGCAACTTGCAGTGCAGCACAAGATTCTCCGCACAATCCCCTTAATTGTTTGGTGGAGATGGCTTTCTTATGTTCAAATGGTTATGAAAGCGAGTCTCAAGCGGTGGAATCTTCTTTAGAAGGGATGGACACCTTTGAGTCCATGACATTGGAACTGATAGAAACCAAGGCAGAAGAATATTTGCCTAAATCGTCCTCGGTTCCGGGACATATAACAATAGAAGAAGACACAGCTAATTTGCTGCAAAACCGTCCTCAAAGAGGCCAGTCTAGAAGAGGCAGGCAACGGAGGGACTTCCAAAGGGACATTCTTCCTGGCCTTGCTTCTCTATCAAGACAAGAAGTTACAGAAGATCTTAATACATTTGGAGGGGTAATGAAAGCAATGGGTCATGTGTGGACTCCAGGGTTGACCAAGAGGAACTCGTTGAGAAACGCTGCCTCTGGCAGGGGAAGGCGGCGATCAGTGATCAGCCCCTCCCCACAGTCAACTGAGAATCTTCCACTGCTGCCTCAGCCTAGTAACTCTGAGATAGGACTAGACAAAAGGAGCCTGACAGGATGGGGGAAGACAACTCGACGGCCCCGCCGACAAAGAGTCCAGGCTGGTAATCTTGCAGCTATTGCTTTAGTTTAG

Protein sequence

MVQDLSIHSLTSLGDPKVYGSPLSWRENFKQTSPTHLTSRQFFWHQRMRSFSLASQPCRSKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFFQLDLATRVQYALNIEQYEIAQELRTKLTEVEAEVIKQQESKRGLTSKSEVQDKGLHIIRLRADLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAYESAEYNFRLGQKTKHKIFGYRGVICGMDPVCCETSSWMEIAQVEKLSRGSNQPFYQFDSPAWLNLFTMCVVICLKTIDVDCSSIFYDAVAEENLLVPEEPDTERFDHPYNSFLFYGVDTAGDFIPVRQLREKYNRPRHEVPYDSQDDDEQRGMGTKVQCKSSLPGFYPMRDLNNDSNSHNWHLFYGERSFLTAQYHEVISPMACANGYRGDDKNVVKQKMLEHEAVFKNQVFELHRLYRKQRDLMNKIKSTELGRNCLAVDSLLFSSPLTSKVTSRRNLPCFPVANSSSTRFSISGIEEEHSSLISVKGNSQSPCFFPSQNGSTVKNLQVLESRPTKFGRKLLDLQLPAEEYIDSEDGEQFHDGNVPDILSHNHNEDQKIDIERDVTDLNEPIQLVETNASTYVDPLGSASCHGEILCPNPSSGPNSGLKNLQRKSSWPVSSQPMESLLSKVHEAPPLHSTDKGRTDQSREGQVFGLQFTKRCPEIKGEPPCSFVTSRASAPRPNAPDLSKSWSNSYSTAQAQQCLQRNFHSPFHGVESSGERWLLSSGSELNKGSDSELLYYNRVFLGFSSEYKEEVGRSSSVGYSYRMQGNGNNEAPKDLSPSMSLKLLKDSNYMNMKGPKERGFNMVFPNNSSGQAGLAVGENCALLPWLSGTTGGSTETTNKNSHSFRNDIFNEEFESDRSAKNRKLLIRSTSEELQDPKKAMCSLARPSVPCETKESRECRVLDINLPCDPSVAESENEPTEKLNEAKVSSFGLIDLNLSISEDEESSRPTPKSTVRMRGEIDLEAPVISETEDTVPAEEIIEAEHELASEPHCKAINQEDVLIEIAAEAMVSISSAVGHIYLEDATCSAAQDSPHNPLNCLVEMAFLCSNGYESESQAVESSLEGMDTFESMTLELIETKAEEYLPKSSSVPGHITIEEDTANLLQNRPQRGQSRRGRQRRDFQRDILPGLASLSRQEVTEDLNTFGGVMKAMGHVWTPGLTKRNSLRNAASGRGRRRSVISPSPQSTENLPLLPQPSNSEIGLDKRSLTGWGKTTRRPRRQRVQAGNLAAIALV

Homology

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BLAST of CmaCh05G004380 vs. ExPASy Swiss-Prot
Match: Q67Y99 (Clp protease adapter protein ClpF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPF PE=1 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 6.0e-103
Identity = 212/351 (60.40%), Postives = 252/351 (71.79%), Query Frame = 0


Query: 1   MVQDLSIHSLTSLGDPKVYGSPLSWRENFKQTSP---THLTSRQFFWHQRMRSFSLASQP 60
           MVQ  S+ +LT  G  KV  S L  R N  + S        S QF   ++  SF  +   
Sbjct: 1   MVQSQSLSTLTICGSVKV-SSLLRNRLNSVKASSLIGDRCVSCQFL--RKSPSFR-SHWK 60

Query: 61  CRSKRGNFKVKAGWLFRGGG-QGLDARIERSENANNDILIFFFQLDLATRVQYALNIEQY 120
              +R   +V+A W F+GGG QGLD   ERSE+AN DILIFFFQLDLATRVQYA+N+EQY
Sbjct: 61  SLKQRNLLRVEARWPFQGGGEQGLDPSSERSESANEDILIFFFQLDLATRVQYAMNLEQY 120

Query: 121 EIAQELRTKLTEVEAEVIKQQESKRGLTSKSEVQDKGLHIIRLRADLQKAIESENYTFAA 180
           +IAQ+LR KLTEVE E I+ QE KRG ++KSE QDKG+ IIRLRADLQ AI+SE+Y  AA
Sbjct: 121 DIAQQLREKLTEVEEESIRLQEGKRGSSAKSEAQDKGISIIRLRADLQNAIDSEDYGLAA 180

Query: 181 QLRDQISKLETESLAASAKVLAYESAEYNFRLGQKTKHKIFGYRGVICGMDPVCCETSSW 240
           +LRD+ISKLE ESLA SAK LA+E AEY FRLGQK +HK FGYR V+CGMDP+C E+SSW
Sbjct: 181 KLRDEISKLEAESLAVSAKALAFEKAEYAFRLGQKLRHKTFGYRAVVCGMDPICSESSSW 240

Query: 241 MEIAQVEKLSRGSNQPFYQFDSPAWLNLFTMCVVICLKTIDVDCSSIFYDAVAEENLLVP 300
           ME A+VEKL RGSNQPFYQ             V++ ++T       +    VAE+NLL P
Sbjct: 241 MEAAEVEKLPRGSNQPFYQ-------------VLVDVRT----HPDLLVAYVAEDNLLAP 300

Query: 301 EEPDTERFDHPYNSFLFYGVDTAGDFIPVRQLREKYNRPRHEVPYDSQDDD 348
           E+PD ERFDHPY SFL+YG DTAGDFIPV+QLREKYNRPRHEVP+DSQD+D
Sbjct: 301 EKPDKERFDHPYISFLYYGADTAGDFIPVKQLREKYNRPRHEVPFDSQDED 330

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BLAST of CmaCh05G004380 vs. TAIR 10
Match: AT2G03390.1 (uvrB/uvrC motif-containing protein )

HSP 1 Score: 377.5 bits (968), Expect = 4.2e-104
Identity = 212/351 (60.40%), Postives = 252/351 (71.79%), Query Frame = 0


Query: 1   MVQDLSIHSLTSLGDPKVYGSPLSWRENFKQTSP---THLTSRQFFWHQRMRSFSLASQP 60
           MVQ  S+ +LT  G  KV  S L  R N  + S        S QF   ++  SF  +   
Sbjct: 1   MVQSQSLSTLTICGSVKV-SSLLRNRLNSVKASSLIGDRCVSCQFL--RKSPSFR-SHWK 60

Query: 61  CRSKRGNFKVKAGWLFRGGG-QGLDARIERSENANNDILIFFFQLDLATRVQYALNIEQY 120
              +R   +V+A W F+GGG QGLD   ERSE+AN DILIFFFQLDLATRVQYA+N+EQY
Sbjct: 61  SLKQRNLLRVEARWPFQGGGEQGLDPSSERSESANEDILIFFFQLDLATRVQYAMNLEQY 120

Query: 121 EIAQELRTKLTEVEAEVIKQQESKRGLTSKSEVQDKGLHIIRLRADLQKAIESENYTFAA 180
           +IAQ+LR KLTEVE E I+ QE KRG ++KSE QDKG+ IIRLRADLQ AI+SE+Y  AA
Sbjct: 121 DIAQQLREKLTEVEEESIRLQEGKRGSSAKSEAQDKGISIIRLRADLQNAIDSEDYGLAA 180

Query: 181 QLRDQISKLETESLAASAKVLAYESAEYNFRLGQKTKHKIFGYRGVICGMDPVCCETSSW 240
           +LRD+ISKLE ESLA SAK LA+E AEY FRLGQK +HK FGYR V+CGMDP+C E+SSW
Sbjct: 181 KLRDEISKLEAESLAVSAKALAFEKAEYAFRLGQKLRHKTFGYRAVVCGMDPICSESSSW 240

Query: 241 MEIAQVEKLSRGSNQPFYQFDSPAWLNLFTMCVVICLKTIDVDCSSIFYDAVAEENLLVP 300
           ME A+VEKL RGSNQPFYQ             V++ ++T       +    VAE+NLL P
Sbjct: 241 MEAAEVEKLPRGSNQPFYQ-------------VLVDVRT----HPDLLVAYVAEDNLLAP 300

Query: 301 EEPDTERFDHPYNSFLFYGVDTAGDFIPVRQLREKYNRPRHEVPYDSQDDD 348
           E+PD ERFDHPY SFL+YG DTAGDFIPV+QLREKYNRPRHEVP+DSQD+D
Sbjct: 301 EKPDKERFDHPYISFLYYGADTAGDFIPVKQLREKYNRPRHEVPFDSQDED 330

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BLAST of CmaCh05G004380 vs. TAIR 10
Match: AT2G03390.2 (uvrB/uvrC motif-containing protein )

HSP 1 Score: 308.9 bits (790), Expect = 1.9e-83
Identity = 157/237 (66.24%), Postives = 186/237 (78.48%), Query Frame = 0


Query: 111 LNIEQYEIAQELRTKLTEVEAEVIKQQESKRGLTSKSEVQDKGLHIIRLRADLQKAIESE 170
           +N+EQY+IAQ+LR KLTEVE E I+ QE KRG ++KSE QDKG+ IIRLRADLQ AI+SE
Sbjct: 1   MNLEQYDIAQQLREKLTEVEEESIRLQEGKRGSSAKSEAQDKGISIIRLRADLQNAIDSE 60

Query: 171 NYTFAAQLRDQISKLETESLAASAKVLAYESAEYNFRLGQKTKHKIFGYRGVICGMDPVC 230
           +Y  AA+LRD+ISKLE ESLA SAK LA+E AEY FRLGQK +HK FGYR V+CGMDP+C
Sbjct: 61  DYGLAAKLRDEISKLEAESLAVSAKALAFEKAEYAFRLGQKLRHKTFGYRAVVCGMDPIC 120

Query: 231 CETSSWMEIAQVEKLSRGSNQPFYQFDSPAWLNLFTMCVVICLKTIDVDCSSIFYDAVAE 290
            E+SSWME A+VEKL RGSNQPFYQ             V++ ++T       +    VAE
Sbjct: 121 SESSSWMEAAEVEKLPRGSNQPFYQ-------------VLVDVRT----HPDLLVAYVAE 180

Query: 291 ENLLVPEEPDTERFDHPYNSFLFYGVDTAGDFIPVRQLREKYNRPRHEVPYDSQDDD 348
           +NLL PE+PD ERFDHPY SFL+YG DTAGDFIPV+QLREKYNRPRHEVP+DSQD+D
Sbjct: 181 DNLLAPEKPDKERFDHPYISFLYYGADTAGDFIPVKQLREKYNRPRHEVPFDSQDED 220

[Close]

BLAST of CmaCh05G004380 vs. TAIR 10
Match: AT1G13940.1 (Plant protein of unknown function (DUF863) )

HSP 1 Score: 265.8 bits (678), Expect = 1.8e-70
Identity = 296/1011 (29.28%), Postives = 463/1011 (45.80%), Query Frame = 0


Query: 352  MGTKVQCKSSLPGF-YPMRDLNNDSNSH-NWHLFYGERSFLTAQYHEVISPMACANGYRG 411
            MGTKV C+S   G+ + M DLN +SN+   W LFYG+     +   +  +    +    G
Sbjct: 1    MGTKVHCESLFGGYHHSMGDLNKESNNGCRWPLFYGDNKTSASNNDQCYNNGFTSQTTFG 60

Query: 412  DDKNVVKQKMLEHEAVFKNQVFELHRLYRKQRDLMNKIKSTELGRNCLAVDSLLFSSPLT 471
             DK+VV++ MLEHEAVFK QV ELHR+YR Q+D+M+++K  +  +  + +++ L SS  T
Sbjct: 61   FDKDVVRRTMLEHEAVFKTQVLELHRVYRTQKDMMDELKRKQFNKEWVQIEASL-SSQAT 120

Query: 472  SKVTSRRNLPCFPVANSSSTRFSISGIEEEHSSLISVKG-NSQSPCFFPSQNGSTVKNLQ 531
            +    +  +P FP+ANS   R S+S +E+   S   +KG NSQ P  +  QNG++ K+++
Sbjct: 121  NDDVRKWKIPSFPLANSVYDRPSMSVVEDNGHS--PMKGSNSQGPVSW--QNGASSKSVE 180

Query: 532  VLESRPTKFGRKLLDLQLPAEEYI-DSEDGEQFHDGNVPDILSHNHNEDQKIDIERD--- 591
            V E RPTK  RK++DL LPA+EYI D+E+  +  D  V    S   N D K +   D   
Sbjct: 181  VSEVRPTKIRRKMIDLCLPADEYIDDNEEVVELKDHRVCSTSSQLPNGDVKTESRIDGVR 240

Query: 592  ----------VTDLNEPIQLVETNASTY--------------VDPLGSASCHGEI----- 651
                      + DLNEP+   E N   Y              +   G +   G +     
Sbjct: 241  IGYGSSRSNGLADLNEPVDAQEANEFAYGHSRDLRNGEFQGHIRDYGKSLNSGSVREHIP 300

Query: 652  ---LCPNPSSGP--------NSGLKNLQRKSSWPV---------SSQPMESLLSKVHEAP 711
               L P+ +  P         +   N   KS+ P           SQPM+ L++      
Sbjct: 301  VIPLQPDLNGKPKVWSHQPLRTDHYNGTHKSAAPFFQPAKPLDSLSQPMQVLMNSSQRVM 360

Query: 712  PL-HSTDKGRTDQSREGQVFGLQF---TKRCPE--IKGEPPCSFVTSRASAPRPN--APD 771
             L +S    +    RE     L+    T    E  I      S +TS    P      PD
Sbjct: 361  SLPNSGPPSKAVVWRERTFIDLEADTDTNSSHEAVIHQNHLDSSLTSHQQRPLYPYIRPD 420

Query: 772  LSKSWSNSYST------------AQAQQCLQRNFHSPFHGVESS----GERWLLSSGSEL 831
             + SW++ +S+            A AQ+    N      G        G+R    S S  
Sbjct: 421  SAVSWNHLHSSWQNPSFGFPQKVASAQRYPVLNMSDTLIGNAQKQGYLGDRLQFESNSRF 480

Query: 832  NKG-SDSELLYYNRVFLGFSSEYKEEVGRSSSVGYSYRMQGNGNNEAPKDLSPSMSLKL- 891
            + G  +S  L +N  +   S+  K +V   +  GY+Y   G  +  + +     ++L + 
Sbjct: 481  DSGCGNSSRLNHNMFYNECSTSSKSKV---AGTGYNYPNGGRSDYSSERKFVRDLNLNVT 540

Query: 892  LKDSNYMNMKGPKERGFNMVFPNNSSGQAGLAVGENCALLPWLSGTTGGS---TETTNKN 951
            L +++ + ++  +E    + + N         + +    L         S    +  ++ 
Sbjct: 541  LSNTSVVEVRKDEEHLATLPWLNKPKSVCNSELADGKWSLKSNDAVPSSSLKPLDIRDEA 600

Query: 952  SHSFRNDIFNEEFESDRSAKNRKLLIRSTSEELQDPKKAMCSLARPSVPCETKESRECRV 1011
                +N ++ E  +S   + N        +E++   K+      +     E  +    R+
Sbjct: 601  GDKVQNIMWLERLKSGSCSNN------PVTEKIDANKEIPGLAYKDQSNVEKGKVHYVRM 660

Query: 1012 LDINLPCDPSVAESENEPTEKLNEAKVSSFG--LIDLNLSISEDEESSRPTPKSTVRMRG 1071
            LD+N PCDP     E++ TE+  E +VS+     IDLN+  S+DE  +   P S+     
Sbjct: 661  LDMNEPCDP--LWDEDQQTEEQTETRVSASNRCQIDLNILGSDDEGENCSVPASS----- 720

Query: 1072 EIDLEAPVISETEDTVPAEEIIEAEHELASEPHCKAINQEDVLIE-------IAAEAMVS 1131
             ++ +AP+I    +TVP  +  E +  ++ E   +  + E+  +E       +AAE +V+
Sbjct: 721  RLNSKAPMID--LETVPESDDEEEDGNISGEKRSEVKSIEEKTLEKPPEFEKLAAETIVA 780

Query: 1132 ISSAVGHIYLEDATCSAAQDSPHNPLNCLVEMAFLCSNGYESE----SQAVESSLEGMDT 1191
            I SA   +  E    ++++ S    L+   E         + +    S+    S+E +D 
Sbjct: 781  IYSAC--LDREVEVVASSEVSETIILHWFAETVNTHKENLDKKLDTFSRNQSRSIEDIDY 840

Query: 1192 FESMTLELIETKAEEYLPKSSSVPGHITIEEDTANLL--QNRPQRGQSRRGRQRRDFQRD 1249
            FESMTL+L +   +EY+PK   VP ++ +EE T   L    RP+RG +R+G+QRRDFQRD
Sbjct: 841  FESMTLQLPDISEQEYMPK-PLVPENLKLEETTGTALVTSQRPRRGNARKGKQRRDFQRD 900

[Close]

BLAST of CmaCh05G004380 vs. TAIR 10
Match: AT1G69360.1 (Plant protein of unknown function (DUF863) )

HSP 1 Score: 255.0 bits (650), Expect = 3.2e-67
Identity = 304/1004 (30.28%), Postives = 439/1004 (43.73%), Query Frame = 0


Query: 352  MGTKVQCKSSLPGFYPMRDLNND-SNSHNWHLFY-GERSFLTAQYHEVISPMACANGYRG 411
            MG  V C S L     MRDL+ D SN+ ++ ++  G+++    QY    S     + Y  
Sbjct: 1    MGETVHCGSFLSS---MRDLSEDISNTCSYSMYCGGDKTLPYGQYQNGFSARPPTDSY-- 60

Query: 412  DDKNVVKQKMLEHEAVFKNQVFELHRLYRKQRDLMNKIKSTELGRNCLAVDSLLFSSPLT 471
             +++ +KQ MLEHEAVFKNQV+ELHRLYR Q+ LM ++K    G+N   VD L  + P  
Sbjct: 61   -ERDFLKQTMLEHEAVFKNQVYELHRLYRTQKSLMAEVK----GKN--FVDHLNNNEPTP 120

Query: 472  SKVTSRRNLPCFPVANSSSTRFSISGIEEEHSSLISVKGNSQSPCFFPSQNGSTVKNLQV 531
                                    SGI+       S+ G   +     SQ+ +  K+ +V
Sbjct: 121  G-----------------------SGIKRGFLFGNSICGEGST-----SQDCNVGKDNKV 180

Query: 532  LESRPTKFGRKLLDLQLPAEEYIDSEDG-------EQFHDGNVPDILSHNHNEDQK---- 591
            LE RP K  R ++DLQLPA+EY+ +E         EQ  +    +I   +H  D      
Sbjct: 181  LEVRPVKVRRTMIDLQLPADEYLHTEGDNTTCPPYEQSKEVG-ENIFFESHRNDSSGSSL 240

Query: 592  -IDIERDVTDLNEPIQLVETNASTYVDPLGSASCHGEILCPNPSSGPNSGLKNLQRKSSW 651
             +      TDLNEP+Q  ++     V    S+     +   N S      ++    ++ W
Sbjct: 241  LMKNSNGFTDLNEPVQCQDS-----VPVSSSSRDLYSLYGANISHVQGQWVEKNTSQNGW 300

Query: 652  PV------SSQPMESLLSKVHEA--------PPLHSTDKGRTDQSREGQVFGLQFTKRCP 711
             V       S P + L    H           PL       +  S E   F  +  +R P
Sbjct: 301  MVLEAGNGKSTPRDKLCLPSHSVQVLSNSAFQPLGYPSTDHSKLSGERASFKCEVRQRNP 360

Query: 712  EIKGEPPCSFVTSRASAPRPN-----APDLSKSWSN--------SYSTAQAQQCLQRNFH 771
            E+  +   S+V S  ++  P+      P+  + WS+        S S+ Q    LQ N  
Sbjct: 361  EVSYD---SYVESSVASNVPSLNHGYRPESVRPWSHWISSWENRSSSSVQKPLPLQAN-- 420

Query: 772  SPFHGVESSGERWLLSSGSELNKGSDSELLY--YNRVFLGFSSEYKEEVGRSSSVGYSYR 831
             PF           L+  +++   S +E+     N +  GFSS  +E      SV +   
Sbjct: 421  -PF-----------LTFNTQVRADSSAEMRSRDSNGLNQGFSSFSEESAFNFPSVNF--- 480

Query: 832  MQGNGNNEAPKDLSPSMSL-KLLKDSNYMNMKGPKERGFNMVFPNNSSGQAGLAVGENCA 891
               N  N  PK    + SL + +   +  N++GPK++         SSG           
Sbjct: 481  ---NHLNNGPKGAVTNGSLCESVMHQSLKNLQGPKKQ-------ECSSG----------- 540

Query: 892  LLPWL-------SGTTGGSTETTNKNSHSF------------------------RNDIFN 951
             LPW+       +G T G  +     +H F                         ND   
Sbjct: 541  -LPWIKPKPLNKNGKTNGGLDLNASANHQFMDERDMGDSSNYVHPQNGLRSVTCSNDANL 600

Query: 952  EEFESDRSAKNRKLLIRSTSEEL----QDPKKAMCSLARPSVPCETKESRECRVLDINLP 1011
               E   S   RK+L    S++L    + P     S+   + P +     +   LDINLP
Sbjct: 601  RHVEMANSQSRRKILGFPISQKLSICEEHPSLITSSVCISNEPKKVNNLVKIN-LDINLP 660

Query: 1012 CDPSVAESENEPTEKLNEAKVSSFGLIDLNLSISEDEESS-RPTPKSTVRMRGEIDLEAP 1071
            C+ SV+E      E+ N+A  +    IDLN   SEDE+S     P+   +    I++EAP
Sbjct: 661  CEASVSEGVVVDKEEGNKA-ATHRQHIDLNFCASEDEDSGFCSNPRVETKATTLINVEAP 720

Query: 1072 VISETEDTVPAEEIIEAEHELASEPHCKAINQEDVLIEIAAEAMVSISSAVGHIYLEDAT 1131
            +  E+E+          E     E   +A +  D LIE AAEA+V+IS +      ++A 
Sbjct: 721  LTLESEE----------EGGKFPEKRDEAGDSVDELIEAAAEAIVTISLSYHCRNTDEAA 780

Query: 1132 CSAAQDSPHNPLNCLVEMAFLCSNGYESESQAV-----------ESSLEGMDTFESMTLE 1191
             S+       PL+  V     C N  ES+  A            E S    D FE+MTL 
Sbjct: 781  SSSTDAVDKEPLSWFVNTIASCGNDLESKIDACLEARDCEGCREECSSGEFDYFEAMTLN 840

Query: 1192 LIETKAEEYLPKSSSVPGHITIE-EDTANLLQNRPQRGQSRRGRQRRDFQRDILPGLASL 1251
            L +TK E+Y+PK   +P ++  +   +  +  NRP+RGQ+RRGR +RDFQRDILPGLASL
Sbjct: 841  LTQTKEEDYMPK-PLIPEYLKFDGTGSMGITSNRPRRGQARRGRPKRDFQRDILPGLASL 895

Query: 1252 SRQEVTEDLNTFGGVMKAMGHVWTPGLTKRNSLRNAASGRGRRRSVISPSPQSTENLPLL 1260
            SR EVTEDL  FGG+MKA G+ W  G+ +R+S R    GR R  S I  +P  +     L
Sbjct: 901  SRLEVTEDLQMFGGLMKATGYNWNSGMARRSSNR----GRKRLVSNIDRAPVCSS----L 895

[Close]

BLAST of CmaCh05G004380 vs. TAIR 10
Match: AT1G26620.1 (Plant protein of unknown function (DUF863) )

HSP 1 Score: 221.5 bits (563), Expect = 3.9e-57
Identity = 253/916 (27.62%), Postives = 409/916 (44.65%), Query Frame = 0


Query: 402  ACANGYRGDDKNVVKQKMLEHEAVFKNQVFELHRLYRKQRDLMNKIKSTELGRNCLAVDS 461
            A ++ Y G +K+ +K  MLEHEAVFKNQV ELHRLYR Q++L+ ++K   L       + 
Sbjct: 5    ADSSSYSGYEKDFMKHTMLEHEAVFKNQVHELHRLYRVQKNLVEEVKGKNLN------EV 64

Query: 462  LLFSSPLTSKVTSRRNLPCFPVANSSSTRFSISGIEEEHSSLISVKGNSQSPCFFPSQNG 521
            +  S   TS+  S+R L  F + NS+                   +G+S        QNG
Sbjct: 65   MNVSDHHTSENESKRKLHGFLLPNSTCG-----------------EGSSTQASNGRLQNG 124

Query: 522  STVKNLQVLESRPTKFGRKLLDLQLPAEEYIDSED----GE--------QFHDGNVPDIL 581
             +  N    E R  K  R+++DLQLPA+EY+D+++    GE        Q   G   D  
Sbjct: 125  GS-SNGDASEGRDVKGRRRMIDLQLPADEYLDTDETTNTGENTSFPPYNQLKSGR-GDAS 184

Query: 582  SHNHNEDQKIDIERD--VTDLNEPIQLVETNASTYVDPL------GSASCHGEILCPNPS 641
              ++     +D++    + DLNEP++  ++  +     +       +A   G+ L  N +
Sbjct: 185  HRSYPSGSCLDVKNSNGLADLNEPLKGQDSEPAALSRDMYSHYGRNNAHVQGQWLEKNRT 244

Query: 642  SGP----NSGLKNLQRKSSWPVSSQPMESLLSKVHEAPPLHSTDKGRTDQSREGQVFGLQ 701
                    +G     ++    + S   + L +   +     +TD  +   S E     L+
Sbjct: 245  QNGWMVLEAGQDRSTQRDQVHLPSHSGQVLSNNAFQPQSYPTTDHSKVKFSGERAHRELE 304

Query: 702  FTKRCPEIKGEPPCSFVTSRASAPRPNAPDLSKSWSNSYSTAQAQQCLQRNFHSPFHGVE 761
               + P++  +   S+V S  ++  P +        N Y         +  F  P     
Sbjct: 305  VRSKTPQVSYD---SYVESSVASTAPRS-------VNDY---------RPEFFKPLTHWS 364

Query: 762  SSGERWLLSSGSELNKGSDSELLYYNRVFLGFSSEYKEEVGRSSSVGYSYRMQGNGNNEA 821
            SSG     S+       ++  + +        S E +  V      G+S   + +  N  
Sbjct: 365  SSGRTMTSSNQKSYPVQTNPYMNFDTHARPDLSFENRSHVSNGLYQGFSSGSKQSFYNFP 424

Query: 822  PKDLSPSMSL-KLLKDSNYMNMKGPKERGFNMVF------PNNSSGQAGLAVGENCALLP 881
                 P+ S+ ++    +++N++GPK +  +         P   SG +      N +   
Sbjct: 425  STGFKPNASIGEVANSHSFVNLQGPKRQECSAGLPWLKPQPPYRSGMSNGFFDLNASTNQ 484

Query: 882  WLSGTTGGSTETTNKNSHSFRNDIFNEEFESDRSAKNRKLLIRSTSEELQDP---KKAMC 941
            ++ GT  G   T        R+  ++      R   N     +S+++ +  P   K+ +C
Sbjct: 485  FMDGTDAGDDLTCASVLKGLRSASYSNNANMGRVETNNS---QSSTKIIGSPIFGKQFVC 544

Query: 942  SLAR-PSVP------CETKESREC--RVLDINLPCDPSVAESENEP----TEKLNEAKVS 1001
               R P +P       + KE      R LDINLPCD SV+  ++       +K    K +
Sbjct: 545  KQERTPLIPHSLWIANQHKEVNHLVKRDLDINLPCDASVSVDQHGAKAYYVDKKEGKKAA 604

Query: 1002 SF-GLIDLNLSISEDEESSRPTPKSTVRMRGE--IDLEAPVISETEDTVPAEEIIEAEHE 1061
            +F   IDLN   +ED+E S      +V+ +    IDLEAP       T+ +EE  +   +
Sbjct: 605  NFRHYIDLNSCANEDDEDSGFLSSLSVKTKARTWIDLEAP------PTLESEEEGDNSQD 664

Query: 1062 LASEPHCKAINQED-----VLIEIAAEAMVSISSAVGHIYLEDATCSAAQDSPHNPLNCL 1121
              +E   + +  +D      LI++AAEA+V+IS A    + +DA  S+   +  +PL+  
Sbjct: 665  KTNEETWRMMQGQDGNSMNELIKVAAEAIVAISMAGHQRHPDDAASSSTDAASKSPLSWF 724

Query: 1122 VEMAFLCSNGYES-----------ESQAVESSLEGMDTFESMTLELIETKAEEYLPKSSS 1181
             E+   C +  E            E    + S   +D FE+MTL + ETK E+Y+P+   
Sbjct: 725  AEIITSCGDELERKIDGSPEATDFEGNREDYSSGEIDYFEAMTLNIQETKEEDYMPE-PL 784

Query: 1182 VPGHITIEEDTANLLQNRPQRGQSRRGRQRRDFQRDILPGLASLSRQEVTEDLNTFGGVM 1241
            VP ++  E+       N+P+RGQ+RRGR +RDFQRD LPGL+SLSR EVTED+  FGG+M
Sbjct: 785  VPENLKFEDTCI----NKPRRGQARRGRPKRDFQRDTLPGLSSLSRHEVTEDIQMFGGLM 844

Query: 1242 KAMGHVWTPGLTKRNSLRNAASGRGRRRSVISPSPQSTENLPLLPQPSNSEI---GLDKR 1249
            K   + W+ GL  R +     S R R  + I+ +P      P + QP N  +   GL+  
Sbjct: 845  KTGDYTWSSGLAVRRN-----SKRKRNVTNINQAPL----CPSMAQPMNESVSVGGLEDS 853

The following BLAST results are available for this feature:

BLAST of CmaCh05G004380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q67Y99	6.0e-103	60.40	Clp protease adapter protein ClpF, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of CmaCh05G004380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03390.1	4.2e-104	60.40	uvrB/uvrC motif-containing protein	[more]
AT2G03390.2	1.9e-83	66.24	uvrB/uvrC motif-containing protein	[more]
AT1G13940.1	1.8e-70	29.28	Plant protein of unknown function (DUF863)	[more]
AT1G69360.1	3.2e-67	30.28	Plant protein of unknown function (DUF863)	[more]
AT1G26620.1	3.9e-57	27.62	Plant protein of unknown function (DUF863)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 119..139
None	No IPR available	COILS	Coil	Coil	coord: 175..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1204..1230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 693..712
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1125..1148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1191..1245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 622..645
None	No IPR available	PANTHER	PTHR33167:SF4	TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED	coord: 352..1254
None	No IPR available	PANTHER	PTHR33167	FAMILY NOT NAMED	coord: 352..1254
IPR011722	Hemimethylated DNA-binding domain	SMART	SM00992	YccV_like_2_a	coord: 203..324 e-value: 1.5E-4 score: 27.2
IPR011722	Hemimethylated DNA-binding domain	TIGRFAM	TIGR02097	TIGR02097	coord: 204..255 e-value: 8.6E-17 score: 59.3
IPR011722	Hemimethylated DNA-binding domain	PFAM	PF08755	YccV-like	coord: 205..318 e-value: 2.9E-15 score: 56.5
IPR008581	Protein of unknown function DUF863, plant	PFAM	PF05904	DUF863	coord: 907..1248 e-value: 6.1E-102 score: 342.7 coord: 490..584 e-value: 6.0E-21 score: 74.6 coord: 635..882 e-value: 1.4E-13 score: 50.3
IPR036623	Hemimethylated DNA-binding domain superfamily	GENE3D	2.30.30.390		coord: 202..257 e-value: 2.5E-14 score: 55.0
IPR036623	Hemimethylated DNA-binding domain superfamily	SUPERFAMILY	141255	YccV-like	coord: 205..317
IPR001943	UVR domain	PFAM	PF02151	UVR	coord: 156..187 e-value: 7.2E-8 score: 31.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G004380.1	CmaCh05G004380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding