CmaCh05G003190 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G003190
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionDNA ligase 1 isoform X1
LocationCma_Chr05: 1384475 .. 1386421 (-)
RNA-Seq ExpressionCmaCh05G003190
SyntenyCmaCh05G003190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGCTCCAAAGAAGTCTTCTTCGTTCTCCGCTAGGGTTTTCATCGCAATACTGTCTCTTCTGTTTTTCTCAAATCTGAACTTCTTTTCTCCTTTTTCTTTCAAATCTTCGCCGAACCCTCCCCATAATAGACACAGATGTCTCGTTGTTTTCCTTACCCACCTCCTGGTTACGTGAGGAAGGTGGCTAGGACCGAGGCGGCCTTGATCGAATCGATTAAGGTTTGTTTGAGCTATTTGGTTGGTTTTGATAATGTATGCTGAATTCAATTGTGTTCGGATTCCAATTGATTGCGAAATCTTCTTGGAATTTTAACTTTTTGGATAGGGGTGTATCTATAATCAGGAACGGCTTTTTTTCCCTTTAGTTTTTGCGACGATGGGGGAAGAATGGATTTGGGTTCTCTTGTTGCGATGTGCGAGATTTTATGTACCCTAATAATTGGATTCTGATTTTGGATTATTTGGAGTTCAGTGTGTGTAGATGGTGGTTTGGGCTTCTTATAGTTGCATGTCGTACAACTCGTTCTTAGATCTTGTATGGATGTTCAGTCTTTGGATCTCGTCATGGTTTTCTAAATGTCCTTGAACTCCGTTCCTTTTGCTTTCAAATGGATTGTTCTCTACAATTTTAAAAGGAAGATATTTAGGGTTTCCCGTAAGCTAATTAACATGAACCCTTTTTCGGGAATTTTTCGCACAACCTTCTTTTCCACGATATCCTTAGCCATTTTAATACACGATGTGAATGTACGTATTTGCTACTACAAATTTATGATTATCTGTGTCCAGATGAAATACTCCTTTACTATAGGAATATCTACCCTTTTGAAGGGTTGCATTTTATTAGTAAGGCATGGTTGACATGTTTGCTGCTTGCGTCGTCTACTCTGTTTTAAATGGTTATTCTGGTGCGTTATAGCTCCAATCTGAAAGACGACAGCACAAGACTGATAGCAAGAAAGAGAAAAGTAAGCACAAGAAAGAAAAGAGCAAGGACAGGAAACACAAAAGCAATGAACGTAAGGAAAGTAAGGAAAAATCTTCTCGTAGCCGTGACTTGAATGATCAGAAACATAAGGTATGTGTAAAAGAGGCCAAGGATCGTCTAGAGGGAACCAAGGTTGAAGCAGAACAATTAGAAAAGAGTGGTCTCACTGAAGAGCATGGACAACCAGTATGGCCTCATAGTCCTGGCTACTTGTCTGATGGAACTCAGATCAACCATAAGAGGAAACGGGATGATTCATTACAGCCTGATGAAGGTTGTAAACCTGGTGTGTTCTCTTTATAGATAATAGTCTCACTTATGAAATAAATTCTCTTGGCCACATGAACAAACTCTAATATGCTATTGATTTCAAACAGGAAAAGTAATTCGGATCAAACTGGCTTCTTCACTAAGCCAGCAAGAGAATTCATCAGCTGGCTGTGAACTGACGTGTTCTGTATCTGGTCGTGATATTTCTCGTGATCAAAAGAGTGATGAAAACAGCTCAGTTGTTCGGCGATCAACTTGCTTTGCCAATTCTGAAACGGCCCGTGCTGTCAAGGATTGCACATCTTCTAAACCTAAGATCAAAGACCCTCCTCCGCATGCTGTCAAGGATCGCACTTCTTCTAAACCTAAGATCAAAGACCCTTCTCCGCATGCTGTCAAGGAAATTAGCTCACTAGGTAATGTTATGTCATTACCACGCACCAGAAGCCCTGTCGAATCTGCTTATGAGGCCTTGTTTGAGAAGTGGGTACCACCTCCACTTCAGTTGGAGCAACAAATGGATGATGAAGAATGGCTCTTCCCAACCGAAAAGCAAGATGGACGAAGTACAAAGACCAATGAAGCTTTCAGTTCTATTCCCAGCTGTAGAAATTCCAGTCTGTGGCCGAGAGGACAATATCTTGCCGTTGCCGATGTTTATTCATTGCCTTACACGATCCCATATTGA

mRNA sequence

CCGCTCCAAAGAAGTCTTCTTCGTTCTCCGCTAGGGTTTTCATCGCAATACTGTCTCTTCTGTTTTTCTCAAATCTGAACTTCTTTTCTCCTTTTTCTTTCAAATCTTCGCCGAACCCTCCCCATAATAGACACAGATGTCTCGTTGTTTTCCTTACCCACCTCCTGGTTACGTGAGGAAGGTGGCTAGGACCGAGGCGGCCTTGATCGAATCGATTAAGCTCCAATCTGAAAGACGACAGCACAAGACTGATAGCAAGAAAGAGAAAAGTAAGCACAAGAAAGAAAAGAGCAAGGACAGGAAACACAAAAGCAATGAACGTAAGGAAAGTAAGGAAAAATCTTCTCGTAGCCGTGACTTGAATGATCAGAAACATAAGGTATGTGTAAAAGAGGCCAAGGATCGTCTAGAGGGAACCAAGGTTGAAGCAGAACAATTAGAAAAGAGTGGTCTCACTGAAGAGCATGGACAACCAGTATGGCCTCATAGTCCTGGCTACTTGTCTGATGGAACTCAGATCAACCATAAGAGGAAACGGGATGATTCATTACAGCCTGATGAAGGTTGTAAACCTGGAAAAGTAATTCGGATCAAACTGGCTTCTTCACTAAGCCAGCAAGAGAATTCATCAGCTGGCTGTGAACTGACGTGTTCTGTATCTGGTCGTGATATTTCTCGTGATCAAAAGAGTGATGAAAACAGCTCAGTTGTTCGGCGATCAACTTGCTTTGCCAATTCTGAAACGGCCCGTGCTGTCAAGGATTGCACATCTTCTAAACCTAAGATCAAAGACCCTCCTCCGCATGCTGTCAAGGATCGCACTTCTTCTAAACCTAAGATCAAAGACCCTTCTCCGCATGCTGTCAAGGAAATTAGCTCACTAGGTAATGTTATGTCATTACCACGCACCAGAAGCCCTGTCGAATCTGCTTATGAGGCCTTGTTTGAGAAGTGGGTACCACCTCCACTTCAGTTGGAGCAACAAATGGATGATGAAGAATGGCTCTTCCCAACCGAAAAGCAAGATGGACGAAGTACAAAGACCAATGAAGCTTTCAGTTCTATTCCCAGCTGTAGAAATTCCAGTCTGTGGCCGAGAGGACAATATCTTGCCGTTGCCGATGTTTATTCATTGCCTTACACGATCCCATATTGA

Coding sequence (CDS)

ATGTCTCGTTGTTTTCCTTACCCACCTCCTGGTTACGTGAGGAAGGTGGCTAGGACCGAGGCGGCCTTGATCGAATCGATTAAGCTCCAATCTGAAAGACGACAGCACAAGACTGATAGCAAGAAAGAGAAAAGTAAGCACAAGAAAGAAAAGAGCAAGGACAGGAAACACAAAAGCAATGAACGTAAGGAAAGTAAGGAAAAATCTTCTCGTAGCCGTGACTTGAATGATCAGAAACATAAGGTATGTGTAAAAGAGGCCAAGGATCGTCTAGAGGGAACCAAGGTTGAAGCAGAACAATTAGAAAAGAGTGGTCTCACTGAAGAGCATGGACAACCAGTATGGCCTCATAGTCCTGGCTACTTGTCTGATGGAACTCAGATCAACCATAAGAGGAAACGGGATGATTCATTACAGCCTGATGAAGGTTGTAAACCTGGAAAAGTAATTCGGATCAAACTGGCTTCTTCACTAAGCCAGCAAGAGAATTCATCAGCTGGCTGTGAACTGACGTGTTCTGTATCTGGTCGTGATATTTCTCGTGATCAAAAGAGTGATGAAAACAGCTCAGTTGTTCGGCGATCAACTTGCTTTGCCAATTCTGAAACGGCCCGTGCTGTCAAGGATTGCACATCTTCTAAACCTAAGATCAAAGACCCTCCTCCGCATGCTGTCAAGGATCGCACTTCTTCTAAACCTAAGATCAAAGACCCTTCTCCGCATGCTGTCAAGGAAATTAGCTCACTAGGTAATGTTATGTCATTACCACGCACCAGAAGCCCTGTCGAATCTGCTTATGAGGCCTTGTTTGAGAAGTGGGTACCACCTCCACTTCAGTTGGAGCAACAAATGGATGATGAAGAATGGCTCTTCCCAACCGAAAAGCAAGATGGACGAAGTACAAAGACCAATGAAGCTTTCAGTTCTATTCCCAGCTGTAGAAATTCCAGTCTGTGGCCGAGAGGACAATATCTTGCCGTTGCCGATGTTTATTCATTGCCTTACACGATCCCATATTGA

Protein sequence

MSRCFPYPPPGYVRKVARTEAALIESIKLQSERRQHKTDSKKEKSKHKKEKSKDRKHKSNERKESKEKSSRSRDLNDQKHKVCVKEAKDRLEGTKVEAEQLEKSGLTEEHGQPVWPHSPGYLSDGTQINHKRKRDDSLQPDEGCKPGKVIRIKLASSLSQQENSSAGCELTCSVSGRDISRDQKSDENSSVVRRSTCFANSETARAVKDCTSSKPKIKDPPPHAVKDRTSSKPKIKDPSPHAVKEISSLGNVMSLPRTRSPVESAYEALFEKWVPPPLQLEQQMDDEEWLFPTEKQDGRSTKTNEAFSSIPSCRNSSLWPRGQYLAVADVYSLPYTIPY
Homology
BLAST of CmaCh05G003190 vs. TAIR 10
Match: AT1G20100.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75860.1); Has 471 Blast hits to 438 proteins in 92 species: Archae - 0; Bacteria - 14; Metazoa - 217; Fungi - 43; Plants - 91; Viruses - 1; Other Eukaryotes - 105 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-13
Identity = 107/351 (30.48%), Postives = 159/351 (45.30%), Query Frame = 0

Query: 1   MSRCFPYPPPGYVRKVARTEAALIESIKLQSERRQHKTDSKKEKSKHKKEKSKDRKHKSN 60
           MSR F  PPP Y R  A  +  L+E  K++    +   DSKK   K KKEK K++K K  
Sbjct: 1   MSRYFTSPPPVYARNWANGQ-NLVEWTKIE----RPIVDSKKLHRKEKKEKKKEKKLK-K 60

Query: 61  ERKESKEKSSRSRDLNDQKHKVCVKEAKDRLEGTKVEAEQLEKSGLTEEHGQPVWPHSPG 120
           E+K  ++K S ++ ++                    E+EQLEKS LTEE  QP      G
Sbjct: 61  EKKSLEQKYSTTKTVS-------------------YESEQLEKSCLTEEFEQP----QVG 120

Query: 121 YLSDGTQINHKRKRDDS---LQPDEGCKP--GKVIRIKLASSLSQQENSSAGCELTCSVS 180
           YLSDG+Q + KR+R+ S   ++      P  GK +RI++     ++  +    +  CS S
Sbjct: 121 YLSDGSQNSKKRRRETSPAVVESQIKATPVAGKPLRIRIVFKKPKEAEAVPQEDPVCSTS 180

Query: 181 GRDISRDQKSDENSSVVRRSTCFANSETARAVKDCTSSKPKIKDPPPHAVKDRTSSKPKI 240
           G      + S+  SSV   S C  + + A       S K  I            S K K 
Sbjct: 181 G----TQRPSELPSSVSLPSIC--DHDVAVPSTSLESGKVAIIS---------ESKKRKK 240

Query: 241 KDPSPHAVKEISSLGNVMSLPRTRSPVESAYEALFEKWVPPPLQLEQ-QMDDEEWLFPTE 300
             PS                       ES Y +LF++ VPP + LE+     ++WLF T 
Sbjct: 241 HKPSK----------------------ESRYNSLFDELVPPCISLEEDDSSSDDWLFGTS 285

Query: 301 KQDGRST-----KTNE-AFSSIPSCRNSSLWPRGQYLAVADVYSLPYTIPY 340
           +++  S+     KT+E    S+ + R+ S  PR   L+   ++SLPYT+P+
Sbjct: 301 RKENVSSAKSSYKTDEDTIMSLQTSRDCSSLPRAMLLSEVGIFSLPYTVPF 285

BLAST of CmaCh05G003190 vs. TAIR 10
Match: AT1G75860.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20100.1); Has 258 Blast hits to 235 proteins in 58 species: Archae - 0; Bacteria - 4; Metazoa - 59; Fungi - 16; Plants - 90; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-12
Identity = 99/349 (28.37%), Postives = 147/349 (42.12%), Query Frame = 0

Query: 1   MSRCFPYPPPGYVRKVARTEAALIESIKLQSERRQHKTDSKKEKSKHKKEKSKDRKHKSN 60
           MSR    PP  + R     +  L+ES KL    ++   DSKK     KKEK + RK K  
Sbjct: 1   MSRVLTCPPLVFARNHVGVQ-NLVESTKL----KRITLDSKKAHRIEKKEKKEKRKEKKE 60

Query: 61  ERKESKEKSSRSRDLNDQKHKVCVKEAKDRLEGTKVEAEQLEKSGLTEEHGQPVWPHSPG 120
            ++E   K   S    D  HK+    +K        E++ LEKSGLT+E  +P      G
Sbjct: 61  TKREKSHK--HSIKATDNHHKLIFLPSKK----VSDESDSLEKSGLTDELEEP--QKHLG 120

Query: 121 YLSDGTQINHKRKRDDSLQPDEGC-----KPGKVIRIKLASSLSQQENSSAGCE-LTCSV 180
           YLSDG+Q + KR RDDS    E         GK +RI++     ++E  +   E + CS 
Sbjct: 121 YLSDGSQNSKKRIRDDSPPAVESLIKAAPVAGKPLRIRMVFKKPKEEVPTLPREAVVCST 180

Query: 181 SGRDISRDQKSDENSSVVRRSTCFANSETARAVKDCTSSKPKIKDPPPHAVKDRTSSKPK 240
           +        KS  +  V+  S   ++S+T+   K+  S+                     
Sbjct: 181 T------VAKSLSHQDVITSS--ISSSKTSELEKNLPST--------------------- 240

Query: 241 IKDPSPHAVKEISSLGNVMSLPRTRSPVESAYEALFEKWVPPPLQLEQQMDDEE---WLF 300
                      I+++       + RS  E  Y ALF+ W PP + +     ++    WLF
Sbjct: 241 ----------SIAAIDETKKRKKHRSSKEDQYNALFDGWTPPSMCIADASSNDNGDYWLF 297

Query: 301 PTEKQDGRSTKTNEAFSSIPSCR-NSSLWPRGQYLAVADVYSLPYTIPY 340
             + Q+    K           R   S WPR Q+L+   +YSLPYT+P+
Sbjct: 301 GNKTQEVLKPKAAVKVDDDTMMRPGDSSWPRAQFLSEVGIYSLPYTVPF 297

BLAST of CmaCh05G003190 vs. TAIR 10
Match: AT4G35940.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17787.1). )

HSP 1 Score: 53.1 bits (126), Expect = 4.9e-07
Identity = 106/409 (25.92%), Postives = 160/409 (39.12%), Query Frame = 0

Query: 1   MSRCFPYPPPGYVRKVARTEAALIESIKLQSERRQHKTDSKKEKSKHKKEKSKDRKHKSN 60
           MSRCFP+PPPGYV    R EA ++ SIK   E+ + +   K  +S  K +K K  + +  
Sbjct: 1   MSRCFPFPPPGYVLNGIRDEAVIVSSIKGVEEKAKKEQRRKDRRSDKKDKKDKKERKEKK 60

Query: 61  ERKESKEKSSRSRDLNDQK--HKVCVKEAKDRLEGTKV---------EAEQLEKSGLTEE 120
           E+KE K K    +++  +K  HK   KE     +G KV         E   LEKS LT E
Sbjct: 61  EKKEKKRKEREGKEVGSEKRSHKRRRKE-----DGAKVDLFHKLKESEVNCLEKSSLTVE 120

Query: 121 ----------------HGQPVWPHSPGYLS---------------------DGTQINHKR 180
                           +   + P                            DG   N+  
Sbjct: 121 RELLQSTSQNSCDSTLNSNEMLPKQKEVQQPLDGRHNNNNNEKRVEKQQPLDGRHNNNNE 180

Query: 181 KRDDSLQPDEG-CKPGKVIRIKLASSLSQQENSSAG--CELTCSVSGRDISRDQKSDENS 240
           KR +  QP +G        RI+    L+ + N++     E    ++GR  + ++K  E  
Sbjct: 181 KRVEKQQPLDGRHNNNNEKRIEKQQPLNGRHNNNNEKLMEKQQPLNGRHNNNNEKRIEKQ 240

Query: 241 SVVRRSTCFANSETARAVKDCTSSKPKIKDPPPHAVKDRTSSKPKIKDP---SPHAVKEI 300
             +       N E  +  +     +    D   HA K R   + K KDP     H  ++I
Sbjct: 241 QPLNGR--HNNKEKQKEKQQPLDVRHNNNDSAEHASKPR---EEKRKDPIFRGKHGKEKI 300

Query: 301 SSLGNVMSLPRTRSPVES----------AYEALFEKWVPPPLQLEQQM---DDEEWLFPT 340
           SS     S   T  P +S           +  + E WVP  ++    +   +DEE  +  
Sbjct: 301 SS----SSTRETYQPPKSLCNCPPSMVLQFLDVVENWVPNTIERRVDLINSEDEECWWSM 360

BLAST of CmaCh05G003190 vs. TAIR 10
Match: AT1G20100.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 1.6e-05
Identity = 68/202 (33.66%), Postives = 98/202 (48.51%), Query Frame = 0

Query: 1   MSRCFPYPPPGYVRKVARTEAALIESIKLQSERRQHKTDSKKEKSKHKKEKSKDRKHKSN 60
           MSR F  PPP Y R  A  +  L+E  K++    +   DSKK   K KKEK K++K K  
Sbjct: 1   MSRYFTSPPPVYARNWANGQ-NLVEWTKIE----RPIVDSKKLHRKEKKEKKKEKKLK-K 60

Query: 61  ERKESKEKSSRSRDLNDQKHKVCVKEAKDRLEGTKVEAEQLEKSGLTEEHGQPVWPHSPG 120
           E+K  ++K S ++ ++                    E+EQLEKS LTEE  QP      G
Sbjct: 61  EKKSLEQKYSTTKTVS-------------------YESEQLEKSCLTEEFEQP----QVG 120

Query: 121 YLSDGTQINHKRKRDDS---LQPDEGCKP--GKVIRIKLASSLSQQENSSAGCELTCSVS 180
           YLSDG+Q + KR+R+ S   ++      P  GK +RI++     ++  +    +  CS S
Sbjct: 121 YLSDGSQNSKKRRRETSPAVVESQIKATPVAGKPLRIRIVFKKPKEAEAVPQEDPVCSTS 169

Query: 181 GRDISRDQKSDENSSVVRRSTC 198
           G      + S+  SSV   S C
Sbjct: 181 G----TQRPSELPSSVSLPSIC 169

BLAST of CmaCh05G003190 vs. TAIR 10
Match: AT2G17787.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35940.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 3.5e-05
Identity = 101/366 (27.60%), Postives = 145/366 (39.62%), Query Frame = 0

Query: 1   MSRCFPYPPPGYVRKVARTEAALIESIKLQSERRQHKTDSKKEKSKHKKEKSKDRKHKSN 60
           MSRC+P+PPPGYV K      +LIESIK                   K+E  KDRKHK N
Sbjct: 1   MSRCYPFPPPGYVWK-----ESLIESIK-----------------GAKEEVKKDRKHKRN 60

Query: 61  ERKESKEKSSRSRDLNDQKHKVCVKEAKDRLEGTKV--EAEQLEKSGLTEEHGQPVWPHS 120
           E K+ K++ + +      +HK   K+      G  V  E E LEKS  T E        S
Sbjct: 61  E-KDRKDRDNEAGRSRKHRHKRRRKDEGAIASGKLVSSEVELLEKSCQTVELELQT---S 120

Query: 121 PGYLSDGTQINHKRKRDDSLQP-DEGCKPGKVIRIKLASSLSQQENSSAGCELTCSVSGR 180
                D T  +++R +    QP DE       IR +L      QE+   G  +T     +
Sbjct: 121 SQNSCDSTLHSNERPKQIQSQPLDE-----TSIRTRLPD--KGQEDPEDGVMMTSKDQKQ 180

Query: 181 DISRDQ------KSDENSSVVRRSTCFAN--SETARAVKDCTSSKPKIKDPPPHAVKDRT 240
             SR+        +  N SV     C       T  + ++ T+   K K   P   KD  
Sbjct: 181 RFSREMLDASQAATAPNESVGHSRVCQEKRIDPTFGSSREITTKLNKEKKSVPS--KDNR 240

Query: 241 SSKPKIKDPSPHAVKEISSLGNVMSLPRTRSP-----------VESAYEALFEKWVPPPL 300
               + K PS  +   +       S   T  P           +      L E W P  +
Sbjct: 241 KVSKEKKMPSLSSCNPLEQEKPTSSHQETPGPSKLLCRKCPPSMAGQLLNLIENWAPDRV 300

Query: 301 Q--LEQQMDDEEWL---FPTEKQDGRSTKTNEAFSSIPSCRNSSLWPRGQYLAVADVYSL 340
           +  L    D E WL   F  +     + KTN+  SS+       +WP  ++L  A+V++L
Sbjct: 301 ESKLTDSEDQEWWLFIKFGAKSPQVSNQKTNQGSSSM-------VWPTARFLPEAEVHAL 324

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT1G20100.13.5e-1330.48unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G75860.11.3e-1228.37unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G35940.24.9e-0725.92unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G20100.21.6e-0533.66unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G17787.13.5e-0527.60unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 84..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 209..241
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..241
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 190..208
NoneNo IPR availablePANTHERPTHR34660:SF7DNA LIGASEcoord: 1..339
NoneNo IPR availablePANTHERPTHR34660MYB-LIKE PROTEIN Xcoord: 1..339

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G003190.1CmaCh05G003190.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016874 ligase activity